mRNA_P-littoralis_Contig16.64.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig16.64.1
Unique NamemRNA_P-littoralis_Contig16.64.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig16.64.1 vs. uniprot
Match: A0A6H5K8M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M5_9PHAE)

HSP 1 Score: 613 bits (1581), Expect = 3.000e-206
Identity = 341/494 (69.03%), Postives = 381/494 (77.13%), Query Frame = 3
Query:  618 NSPATGSPALSLELGKAEARQSSNLRVTTRAIDALHARIAAAKRELDQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSRTAKSSPSKGEGSASNSP------VEAGDDGGAV--KKTGLQAMDQEGGDAGGGXXXXXXXXXXXXXXXXXXAVAGILAKLASDVAGLNTLEAVGSENKNFHATISKLAKAAEKHFGGDVESVRRTPPLKEKALHTAITTHLYRRGAFRSAARFSEDSSASVPPDTSSQLVEMHTVLDALNKQNLAPAERWFEKRREALEAVGSSLEFQLARLRFLRFLKSADPKQRREAMLYARERLRPVSGGHMRELKELMGSLLWCGNLEASPYSHLLSLELWARVKESVAIDGSRVSGLSRESILSVAFRAGVLALPTLLKMAVVVRGSNQEWDGMQELPLEVPLPPGLRYHSMFSCPVSREPSSLDNPPVLLKCGHAVLRSSVGRLPRSGSRFKCPTCPMEQTENETMALTL 2075
            N    G+PAL  EL KAEARQ+SNLRVTT+AIDALHAR+A AKRELD+                                      +++   SPSKG+G+A  SP      V A   GG    ++ G QAMD EG   G G                   VAGIL++LASDVAGL TL+AVGSE+KNFHATISKLAKAAEK FGG+VESVRRTP L EKALHTAI THLYRRGAFR+AA+FSEDS+AS+P +T+S LVE+H VLDAL+K NLAPAERWFEKRR+ALE VGSSLEFQLARLRFLRFL+SADP QRREAM+YARER+ PV+GGHMREL+ELMGSLLW GNLEASPYSHLLS ELW RVKESVA+D SR+SGLSRESILSVAFRAG+LALPTL+KMA VVRGSN EW+GM+ELPLEVPLPPGLRYHSMFSCPVSREPS+LDNPPVLLKCGHAVLRSSV RL R+GSRFKCPTCP+EQ ENETM LTL
Sbjct:    3 NQGGGGAPALGPELNKAEARQASNLRVTTKAIDALHARVARAKRELDKHNQKQLEAAGGGAGAASSEGLRAGANESPTRSASKPATAKSPTRSPSKGKGAACKSPPRSTKAVAAATRGGGTGGQQGGAQAMDLEGEGGGSGVR-----------------VAGILSELASDVAGLKTLDAVGSEHKNFHATISKLAKAAEKQFGGNVESVRRTPALNEKALHTAIITHLYRRGAFRAAAKFSEDSTASIPAETTSHLVEIHGVLDALDKHNLAPAERWFEKRRKALEGVGSSLEFQLARLRFLRFLESADPGQRREAMMYARERVMPVAGGHMRELQELMGSLLWSGNLEASPYSHLLSQELWTRVKESVAVDASRISGLSRESILSVAFRAGILALPTLVKMAAVVRGSNLEWNGMRELPLEVPLPPGLRYHSMFSCPVSREPSTLDNPPVLLKCGHAVLRSSVSRLARNGSRFKCPTCPVEQMENETMPLTL 479          
BLAST of mRNA_P-littoralis_Contig16.64.1 vs. uniprot
Match: D8LT28_ECTSI (RING-Gid-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT28_ECTSI)

HSP 1 Score: 425 bits (1093), Expect = 3.010e-137
Identity = 213/252 (84.52%), Postives = 234/252 (92.86%), Query Frame = 3
Query: 1320 EDSSASVPPDTSSQLVEMHTVLDALNKQNLAPAERWFEKRREALEAVGSSLEFQLARLRFLRFLKSADPKQRREAMLYARERLRPVSGGHMRELKELMGSLLWCGNLEASPYSHLLSLELWARVKESVAIDGSRVSGLSRESILSVAFRAGVLALPTLLKMAVVVRGSNQEWDGMQELPLEVPLPPGLRYHSMFSCPVSREPSSLDNPPVLLKCGHAVLRSSVGRLPRSGSRFKCPTCPMEQTENETMALTL 2075
            +DS+AS+P +T+S LVE+H VLDAL+K NL PAERWFEKRR+ALE VGSSLEFQLARLRFLRFL+SADP +RREAM+YARER+ PV+G HMREL+ELMGSLLW GNLEASPYSHLLSLELW RVKESVA+D SRVSGLSRESILSVAFRAG+LALPTL+KMA VVRGSNQEW+GMQELPLEVPLPPGLRYHSMFSCPVSREPS+LDNPPVLLKCGH VLRSSV RL R+GSRFKCPTCP+EQ ENETM LTL
Sbjct:    2 DDSAASIPAETTSHLVEIHGVLDALDKHNLVPAERWFEKRRKALERVGSSLEFQLARLRFLRFLESADPGKRREAMMYARERVMPVAGRHMRELQELMGSLLWSGNLEASPYSHLLSLELWTRVKESVAVDASRVSGLSRESILSVAFRAGILALPTLVKMAAVVRGSNQEWNGMQELPLEVPLPPGLRYHSMFSCPVSREPSTLDNPPVLLKCGHVVLRSSVSRLARNGSRFKCPTCPVEQMENETMPLTL 253          
BLAST of mRNA_P-littoralis_Contig16.64.1 vs. uniprot
Match: A0A7R9U2J0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2J0_9STRA)

HSP 1 Score: 237 bits (604), Expect = 1.500e-65
Identity = 135/332 (40.66%), Postives = 188/332 (56.63%), Query Frame = 3
Query: 1083 ILAKLASDVAGLNTLEAVGSENKNFHATISKLAKAAEKHFGGDVESVRRTPPLKEKALHTAITTHLYRRGAFRSAARFSEDSSASVPPDTSSQLVEMHTVLDALNKQNLAPAERWFEKRREALEAVGSSLEFQLARLRFLRFLKSADPKQRREAMLYARERLRPVSGGHMRELKELMGSLLWCGNLEASPYSHLLSLELWARVKESVAIDGSRVSGLSRESILSVAFRAGVLALPTLLKMAVVVRGSNQEWDGMQE-LPLEVPLPPGLRYHSMFSCPVSREPSSLDNPPVLLKCGHAVLRSSVGRLPRSGSRFKCPTCPMEQTENETMALTL 2075
            +L +L+ D+  L+  E + +  K+FHA +SKL K  EK    D ++V + PPL E  L   +  H YR G  ++A    E     +  D  S L  +H +  AL ++NL PA RW  +RR         LEF L RL+FL  L       + EA+ +A+ER    + GHMRE+++ MG+LLW G L+ SPY  L S E W +  ++    G    GL   S L VAF AG+  +P L KM  VV  S+ +W  + E LP EV LPP   +HS+FSCPV+R+ +  DNPPV+LKCGH +LRSS+ +L R+G R KCPTCP +   +E   L +
Sbjct:   60 VLERLSRDLKELSPHERMMAAYKSFHAGLSKLQKKVEKLRPSDFDAVGKAPPLPEAPLRELVALHCYRSGYVQTAQELCERWGLDLSDDEVSALCRLHGIASALQQRNLKPALRWVAERRGGT----GELEFMLVRLQFLEILSQPGDAVQEEALAFAQERFPDFADGHMREIQQCMGALLWAGRLDKSPYRTLASEEAWQKSVQAFLEVGCEAEGLPMHSHLLVAFVAGLQFVPILAKMLAVVV-SDGDWTKLGERLPAEVSLPPEFTFHSLFSCPVTRDEADRDNPPVVLKCGHVILRSSLAKLTRAGGRIKCPTCPRDMRADEVQPLLI 386          
BLAST of mRNA_P-littoralis_Contig16.64.1 vs. uniprot
Match: A0A0D2WQV5_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WQV5_CAPO3)

HSP 1 Score: 226 bits (576), Expect = 2.060e-61
Identity = 127/312 (40.71%), Postives = 189/312 (60.58%), Query Frame = 3
Query: 1134 VGSENKNFHATISKLAKAAEKHFGGDVESVRRTPPLKEKA----LHTAITTHLYRRGAFRSAARFSEDSSASVPPDTSSQLVEMHTVLDALNKQNLAPAERWFEKRREALEAVGSSLEFQLARLRFLRFLKSADPKQRREAMLYARERLRPVSGGHMRELKELMGSLLWCGNLEASPYSHLLSLELWARVKESVAIDGSRVSGLSRESILSVAFRAGVLALPTLLKMAVVVRG---SNQEWDGMQELPLEVPLPPGLRYHSMFSCPVSREPSSLDNPPVLLKCGHAVLRSSVGRLPRSGSRFKCPTCPMEQT 2048
            V  E+++ HAT+S+  K  +K F  D++     P   E A    L+  I  HL R+G F +A  F  +S  ++        +EM+ +++A  +Q+LAPA RW  + R+ALE +GSSLEF+L +L FLR L+      RR+A+ YAR +  P S  H+ E++ LMG LL+ G    +PY  L+    W  +  +   D   + G++ +S L V+F AG  ALPTLLKMA V++G   S+  W    ELP+E+ L    ++HS+F+CPVSRE +S +NPP+++KCGH V + S+ RL ++G RFKCP CP+EQT
Sbjct:  101 VTEEHRDMHATVSRFGKTIDKAFVTDIDKFA-NPAAFEGAQAALLNEVIAKHLLRQGHFAAAETFIRESGLTLEQPQLGPFIEMYNIMEAFKQQDLAPALRWASENRQALERIGSSLEFKLHKLEFLRRLQI----DRRDALQYARVQFVPFSHSHLNEVQRLMGCLLYYGRAPPTPYMELVDSIHWTEIAHAFTRDCCAMLGMTYDSPLFVSFLAGCAALPTLLKMASVMQGRGASSTLWTSKDELPVEIELGKDSQFHSVFACPVSREQASPENPPMMMKCGHVVCKLSLERLSKNGGRFKCPYCPVEQT 407          
BLAST of mRNA_P-littoralis_Contig16.64.1 vs. uniprot
Match: A0A5J4Z334_PORPP (Protein RMD5-like A n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z334_PORPP)

HSP 1 Score: 225 bits (573), Expect = 7.360e-61
Identity = 123/308 (39.94%), Postives = 188/308 (61.04%), Query Frame = 3
Query: 1143 ENKNFHATISKLAKAAEKHFGGDVESVRRTPP-LKEKALHTAITTHLYRRGAFRSAARFSEDSSASVPPDTSSQLVEMHTVLDALNKQNLAPAERWFEKRREALEAVGSSLEFQLARLRFLRFLKSADPKQRREAMLYARERLRPVSGGHMRELKELMGSLLWCGNLEASPYSHLLSLELWARVKESVAIDGSRVSGLSRESILSVAFRAGVLALPTLLKMAVVVRGSNQ--EWDGMQELPLEVPLPPGLRYHSMFSCPVSREPSSLDNPPVLLKCGHAVLRSSVGRLPRSGSRFKCPTCPMEQTENE 2057
            E +  +  I+K+ K  +K    D+E   ++   L  + +H AI THL+R G F+ A  +  ++ A +  +TSS   EM+++L+ L K N+  A  W    RE LEA+ S+LEF+L  + F+R L   D   R  A+ YARE     +   + +++  MG LL+   LE SPY+ L+S  +W++V E+ + D  R+ G++++S L V   AG LA+P L K + +    N+  EW G   LP+E+PLP   R+HS+F+CPVSRE S+ DNPP++L CGHA+ ++S+GRLPR  SRFKCP CP EQ+ ++
Sbjct:  119 EQREVYNGINKIIKLVDKLVVLDIEKAYQSSAVLDPQKIHVAIATHLFREGMFQLADNYVREAGAPIEANTSSAYHEMYSILEELRKHNVQRAIAWVTAHREQLEAIESTLEFRLHSVEFIRLLLQRD---RAGAVKYAREHFGRFAKSSLPDIQRHMGFLLYATRLETSPYAPLVSETMWSQVIETFSRDSCRILGMAQDSALHVVVSAGTLAIPVLSKASRIRTPMNESSEWTGADHLPVEIPLPQEFRFHSIFACPVSREESTPDNPPMILFCGHALCKNSIGRLPRGNSRFKCPYCPSEQSPSK 423          
BLAST of mRNA_P-littoralis_Contig16.64.1 vs. uniprot
Match: A0A7S1U8N9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8N9_9STRA)

HSP 1 Score: 223 bits (567), Expect = 1.090e-60
Identity = 132/330 (40.00%), Postives = 177/330 (53.64%), Query Frame = 3
Query: 1083 ILAKLASDVAGLNTLEAVGSENKNFHATISKLAKAAEKHFGGDVESVRRTPPLKEKALHTAITTHLYRRGAFRSAARFSEDSSASVPPDTSSQLVEMHTVLDALNKQNLAPAERWFEKRREALEAVGSSLEFQLARLRFLRFLKSADPKQRREAMLYARERLRPVSGGHMRELKELMGSLLWCGNLEASPYSHLLSLELWARVKESVAIDGSRVSGLSRESILSVAFRAGVLALPTLLKMAVVVRGSNQEWDGMQE-LPLEVPLPPGLRYHSMFSCPVSREPSSLDNPPVLLKCGHAVLRSSVGRLPRSGSRFKCPTCPMEQTENETMAL 2069
            + A+LA ++  L   +   +  K+FH+ +SKL K  EK    D + V R PPL E  L   +  H YR G  R+AA   E     +     + L  +H +  AL  ++LAPA RW  +RR         LEF L RL+F   L       + EA+ +A+ER    +  HMRE++  MG+LLW G L+ASPY  L   E W R   +    G    GL   S L V F AG+  +P L KM  VV  S+ +W  + E LP EV LPP   +HS+FSCPV+R+ +  DNPPV+L+CGH +LRSS+ +L R G R KCPTCP E    E   L
Sbjct:   48 VAAQLARELEALAPADRAMAAYKSFHSGVSKLGKRVEKARPLDFDVVGRAPPLSEAPLRELVVLHCYRSGYLRTAAMLREHWRLQLAEAEVAALCRLHGIASALQARDLAPALRWLAERRGGT----GELEFMLVRLQFFEILSQPGEAVQEEALAFAQERFPDFAASHMREIQRCMGALLWAGRLKASPYVALAGDEAWDRTIATFMEVGCEAEGLPMHSHLLVTFVAGLQFVPILAKMLAVVV-SDGDWTQVGERLPAEVALPPEFTFHSLFSCPVTRDEADRDNPPVVLRCGHVILRSSLAKLTRVGGRVKCPTCPREMRAEEVEEL 372          
BLAST of mRNA_P-littoralis_Contig16.64.1 vs. uniprot
Match: A0A397JTR3_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397JTR3_9GLOM)

HSP 1 Score: 221 bits (563), Expect = 4.590e-60
Identity = 118/324 (36.42%), Postives = 188/324 (58.02%), Query Frame = 3
Query: 1122 TLEAVGS----ENKNFHATISKLAKAAEKHFGGDVESVRRTPPL---KEKALHTAITTHLYRRGAFRSAARFSEDSSASVPPDTSSQLVEMHTVLDALNKQNLAPAERWFEKRREALEAVGSSLEFQLARLRFLRFLKSADPKQRREAMLYARERLRPVSGGHMRELKELMGSLLWCGNLEASPYSHLLSLELWARVKESVAIDGSRVSGLSRESILSVAFRAGVLALPTLLKMAVVVRGSNQEWDGMQELPLEVPLPPGLRYHSMFSCPVSREPSSLDNPPVLLKCGHAVLRSSVGRLPRSGS-RFKCPTCPMEQTENETMAL 2069
            TLE+  S    E+K     +SK  KA ++ +  D+ ++   P     KE  L   I  H  R G FR    F  ++   +P     Q + M+ +LDA+N  NL PA  W + +R+ LE  GSSLEFQL RL F+++L     ++R EA++YA+         HM+E+K LMG+L++   L +SPY+  LS + W  ++++   D   + G++ +S L ++   G  ALPT++KMA +++    EW    ELP+E+PL   +RYHS+F+CPVS+E S+ +NPP+++ CGH + + S+ +L   G+ RFKCP CP+E   N+ + +
Sbjct:   61 TLESYASQASEEHKEIQKIVSKYEKAIDRKWKQDI-TIASNPEAFVSKETVLQRTIALHFIRHGKFRLGNTFIGETGLDLPNSLQMQFLRMYQILDAINNLNLEPALLWAKSQRDELERRGSSLEFQLHRLHFIKYLLE---QRRDEALMYAKTNFEYFQARHMKEIKRLMGALIYINRLSSSPYADFLSKDAWTDIQQTFTRDFCNLLGMACDSPLYISVTVGATALPTIIKMATIMKEKKNEWSQQNELPVEIPLTDDMRYHSIFACPVSKEQSTEENPPMMMPCGHVICKESLTKLSSKGNGRFKCPYCPIESMVNQAVRV 380          
BLAST of mRNA_P-littoralis_Contig16.64.1 vs. uniprot
Match: UPI000B8CA0FF (protein RMD5 homolog A n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CA0FF)

HSP 1 Score: 218 bits (556), Expect = 4.360e-59
Identity = 125/321 (38.94%), Postives = 181/321 (56.39%), Query Frame = 3
Query: 1083 ILAKLASDVAGLNTLEAVGSENKNFHATISKLAKAAEKHFGGDVESVRRTPPLKEKALHTAITTHLYRRGAFRSAARFSEDSSASVPPDTSSQLVEMHTVLDALNKQNLAPAERWFEKRREALEAVGSSLEFQLARLRFLRFLKSADPKQRREAMLYARERLRPVSGGHMRELKELMGSLLWCGNLEASPYSHLLSLELWARVKESVAIDGSRVSGLSRESILSVAFRAGVLALPTLLKMAVVVRGSNQEWDGMQELPLEVPLPPGLRYHSMFSCPVSREPSSLDNPPVLLKCGHAVLRSSVGRLPRSGSR-FKCPTCPME 2042
            +L +L   +  L  L  + S  K  + +ISK  K  EK F  D+    R        ++  I +H YR+G F        ++      +  SQ +EMH +L+A+  +NL PA  W    RE L+  GS+LE +L RL+++  LK+ +   R +A+ YAR  L P +  H+ E+++LM SLLW G L+ SPY+ L S   W R+ E V      + G S ES LSVA  AG+  LPTLLK+A V+    QEW  M++LP+ V L    ++HS+F CPVSR+ SS +NPP+L+ C H + + S+ +L RS +R FKCP CP E
Sbjct:   57 LLVELKLKLNALGPLHQLESSQKEVNISISKYPKVLEKSFNPDISKAYRNVDFDFHVVNQIIASHFYRQGLFDLGDCLINEAGEPEATEVKSQFLEMHQILEAMKVRNLKPALNWVSANREKLKQNGSNLELKLHRLQYVEILKNGN---RDDALSYARTYLAPFASLHLDEIQKLMASLLWAGRLDNSPYAELTSPSHWERLTEEVTQQFCSLMGQSYESPLSVAVAAGIEGLPTLLKLANVMAAKKQEWQAMKQLPVPVELGKEFQFHSIFVCPVSRDQSSEENPPMLMPCLHVLCKQSIMKLSRSSARTFKCPYCPAE 374          
BLAST of mRNA_P-littoralis_Contig16.64.1 vs. uniprot
Match: A9SBV1_PHYPA (Predicted protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9SBV1_PHYPA)

HSP 1 Score: 216 bits (549), Expect = 3.800e-58
Identity = 129/330 (39.09%), Postives = 180/330 (54.55%), Query Frame = 3
Query: 1080 GILAKLASDVAGLNTLEAVGSENKNFHATISKLAKAAEKHFGGDVESVRRTPPLKEKALHTAITTHLYRRGAFRSA---ARFSEDSSASVPPDTSSQLVEMHTVLDALNKQNLAPAERWFEKRREALEAVGSSLEFQLARLRFLRFLKSADPKQRREAMLYARERLRPVSGGHMRELKELMGSLLWCGNLEASPYSHLLSLELWARVKESVAIDGSRVSGLSRESILSVAFRAGVLALPTLLKMAVVVRGSNQEWDGMQELPLEVPLPPGLRYHSMFSCPVSREPSSLDNPPVLLKCGHAVLRSSVGRLPRSGSR-FKCPTCPMEQTENE 2057
            G+L  L   +  +  L  +G   K  + T SK  K  +K F  D+    R        ++  I  H YR G F      A+ S++S+A+    T   L EM+  LD L  +NL PA  W  K R++LEA GSSLEFQL +L+F+  L +   K R EA+ YA+    P S  +M  ++ LM  LLW   LE SPY  LLS   W +V          + G   ES L V   AG  AL +LLK A V+    QEW  ++++P+E+PL    ++HS+F+CPVSRE S+ DNPP+L+ CGH + + S+ +L +S SR FKCP CP+E T N+
Sbjct:   55 GVLRDLQIKLNEIGPLSRIGVSQKELNTTTSKYGKILDKSFNPDIAKAYRDVEFDSHLINQIIVQHFYRLGLFELGDCFAKESQESNAAAALKT--HLYEMYQNLDQLQAKNLEPALNWARKNRQSLEAKGSSLEFQLHQLQFVHVLTT---KGRGEALEYAKLNFLPFSAEYMSGIQRLMACLLWANRLEFSPYKDLLSSAHWDKVALEFTRQCCNLLGQPYESPLYVTLSAGSQALSSLLKFATVMSSKKQEWAALKQMPIEIPLDNSFQFHSVFACPVSREQSTADNPPMLMCCGHVLCKQSIQKLTKSNSRMFKCPYCPLETTANQ 379          
BLAST of mRNA_P-littoralis_Contig16.64.1 vs. uniprot
Match: A0A2K1KG41_PHYPA (Uncharacterized protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KG41_PHYPA)

HSP 1 Score: 214 bits (545), Expect = 1.310e-57
Identity = 124/331 (37.46%), Postives = 185/331 (55.89%), Query Frame = 3
Query: 1080 GILAKLASDVAGLNTLEAVGSENKNFHATISKLAKAAEKHFGGDVESVRRTPPLKEKALHTAITTHLYRRGAFRSAARFSEDSSASVPPDTSSQL----VEMHTVLDALNKQNLAPAERWFEKRREALEAVGSSLEFQLARLRFLRFLKSADPKQRREAMLYARERLRPVSGGHMRELKELMGSLLWCGNLEASPYSHLLSLELWARVKESVAIDGSRVSGLSRESILSVAFRAGVLALPTLLKMAVVVRGSNQEWDGMQELPLEVPLPPGLRYHSMFSCPVSREPSSLDNPPVLLKCGHAVLRSSVGRLPRSGSR-FKCPTCPMEQTENE 2057
            GIL  L   +  +  +  VG+  K  + T+SK  K  +K F  D+    R        ++  I  H YR G F S   F+++S     P+ ++ L     EM+  L  L ++N+ PA  W  + R+ALEA GSSLEF+L +L+FL  L++   K R EA+ YA+    P +  HM +++ LM  LLW   LE SPY  LLS   W +V      +   + G   ES L V   AG  AL +LLK+A V+    QEW  ++++P+E+ L    ++HS+F+CPVSRE S+ DNPP+L++CGH + + S+ +L +S SR FKCP CP E + ++
Sbjct:   55 GILTDLQLKLTEIAPVNQVGALQKELNTTVSKYGKMVDKAFNPDIAKAYREVESDSHLINQIIVQHFYRMGLFESGDCFAKESQE---PNAAAALKVPFYEMYQNLGHLREKNVEPALSWARRNRQALEAKGSSLEFRLHQLQFLHVLRT---KGRIEALEYAKLNFTPFAAEHMSDIQRLMACLLWANRLECSPYKDLLSPSQWDKVALEFTRESCNLLGQPYESPLYVTLSAGSQALSSLLKLATVMSSKKQEWAALKQMPVEIELDNSFQFHSVFACPVSREQSTADNPPMLMRCGHVLCKQSIQKLTKSNSRMFKCPYCPFETSASQ 379          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig16.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8M5_9PHAE3.000e-20669.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT28_ECTSI3.010e-13784.52RING-Gid-type domain-containing protein n=1 Tax=Ec... [more]
A0A7R9U2J0_9STRA1.500e-6540.66Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A0D2WQV5_CAPO32.060e-6140.71Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
A0A5J4Z334_PORPP7.360e-6139.94Protein RMD5-like A n=1 Tax=Porphyridium purpureum... [more]
A0A7S1U8N9_9STRA1.090e-6040.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A397JTR3_9GLOM4.590e-6036.42Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
UPI000B8CA0FF4.360e-5938.94protein RMD5 homolog A n=1 Tax=Carica papaya TaxID... [more]
A9SBV1_PHYPA3.800e-5839.09Predicted protein n=2 Tax=Physcomitrium patens Tax... [more]
A0A2K1KG41_PHYPA1.310e-5737.46Uncharacterized protein n=3 Tax=Physcomitrium pate... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig16contigP-littoralis_Contig16:212789..229210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LT28
Preferred nameRMND5A
PFAMsCLTH,zf-RING_UBOX
Model size3523
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019538,GO:0019941,GO:0030163,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0071704,GO:1901564,GO:1901565,GO:1901575
Exons9
Evalue5.06e-146
EggNOG OGsCOG5109@1|root,KOG2817@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-08_003890.1
Descriptionproteasome-mediated ubiquitin-dependent protein catabolic process
Cds size1473
COG categoryJ
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig16.64.1prot_P-littoralis_Contig16.64.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig16 217105..227765 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789765.534946-UTR-P-littoralis_Contig16:212788..2130211680789765.534946-UTR-P-littoralis_Contig16:212788..213021Pylaiella littoralis U1_48UTRP-littoralis_Contig16 212789..213021 +
1680789765.5501287-UTR-P-littoralis_Contig16:216732..2171041680789765.5501287-UTR-P-littoralis_Contig16:216732..217104Pylaiella littoralis U1_48UTRP-littoralis_Contig16 216733..217104 +
1680789765.6386638-UTR-P-littoralis_Contig16:227765..2292101680789765.6386638-UTR-P-littoralis_Contig16:227765..229210Pylaiella littoralis U1_48UTRP-littoralis_Contig16 227766..229210 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789765.5593143-CDS-P-littoralis_Contig16:217104..2176951680789765.5593143-CDS-P-littoralis_Contig16:217104..217695Pylaiella littoralis U1_48CDSP-littoralis_Contig16 217105..217695 +
1680789765.5679247-CDS-P-littoralis_Contig16:218965..2190911680789765.5679247-CDS-P-littoralis_Contig16:218965..219091Pylaiella littoralis U1_48CDSP-littoralis_Contig16 218966..219091 +
1680789765.5764482-CDS-P-littoralis_Contig16:219376..2194771680789765.5764482-CDS-P-littoralis_Contig16:219376..219477Pylaiella littoralis U1_48CDSP-littoralis_Contig16 219377..219477 +
1680789765.5848465-CDS-P-littoralis_Contig16:221486..2215771680789765.5848465-CDS-P-littoralis_Contig16:221486..221577Pylaiella littoralis U1_48CDSP-littoralis_Contig16 221487..221577 +
1680789765.599879-CDS-P-littoralis_Contig16:223638..2237281680789765.599879-CDS-P-littoralis_Contig16:223638..223728Pylaiella littoralis U1_48CDSP-littoralis_Contig16 223639..223728 +
1680789765.6081066-CDS-P-littoralis_Contig16:225949..2261111680789765.6081066-CDS-P-littoralis_Contig16:225949..226111Pylaiella littoralis U1_48CDSP-littoralis_Contig16 225950..226111 +
1680789765.6164615-CDS-P-littoralis_Contig16:226911..2270721680789765.6164615-CDS-P-littoralis_Contig16:226911..227072Pylaiella littoralis U1_48CDSP-littoralis_Contig16 226912..227072 +
1680789765.6264749-CDS-P-littoralis_Contig16:227614..2277651680789765.6264749-CDS-P-littoralis_Contig16:227614..227765Pylaiella littoralis U1_48CDSP-littoralis_Contig16 227615..227765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig16.64.1

>prot_P-littoralis_Contig16.64.1 ID=prot_P-littoralis_Contig16.64.1|Name=mRNA_P-littoralis_Contig16.64.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=491bp
MSSPNSPATGSPALSLELGKAEARQSSNLRVTTRAIDALHARIAAAKREL
DQLQQQQQQQEEASASDLSPGSPSEPAAAAAAAAAAVALKSRTAKSSPSK
GEGSASNSPVEAGDDGGAVKKTGLQAMDQEGGDAGGGEGGGGGGGDGDGG
GGGDGAVAGILAKLASDVAGLNTLEAVGSENKNFHATISKLAKAAEKHFG
GDVESVRRTPPLKEKALHTAITTHLYRRGAFRSAARFSEDSSASVPPDTS
SQLVEMHTVLDALNKQNLAPAERWFEKRREALEAVGSSLEFQLARLRFLR
FLKSADPKQRREAMLYARERLRPVSGGHMRELKELMGSLLWCGNLEASPY
SHLLSLELWARVKESVAIDGSRVSGLSRESILSVAFRAGVLALPTLLKMA
VVVRGSNQEWDGMQELPLEVPLPPGLRYHSMFSCPVSREPSSLDNPPVLL
KCGHAVLRSSVGRLPRSGSRFKCPTCPMEQTENETMALTL*
back to top

mRNA from alignment at P-littoralis_Contig16:212789..229210+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig16.64.1 ID=mRNA_P-littoralis_Contig16.64.1|Name=mRNA_P-littoralis_Contig16.64.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=16422bp|location=Sequence derived from alignment at P-littoralis_Contig16:212789..229210+ (Pylaiella littoralis U1_48)
CGAGCCATGATGCGCGGAGCCCCACATTTGCAGGCGAGCGACCTTCTCCC ACCTGCAGCAGTCAAACATAGAAGTAACGCAAGAGACGGATAGGTATCCT ACCCGTGCCTTGCGACGGACTTGGGCAATCCGTCAAGTGTGTGGCTTGGT GGTTGGTGGTGCTCTTTGAGCGGGTTGCGCTGCCGCTGTTCTGCGTGCTG CTCCTGCTCACACACGCGAGGAATCAGGAACAGGTGTGGAGCTCCAAAAG AGAAATAAAGAGGTAGATTTTGTTGGTTTTCTGTCAAGGTTCCTGCTGTA ACAGGCAAAGTCGTCACAGAACAGCTACCTCGACCTGTGCACTGCGCTAC ACGCGTGCGCCTCCAATGCGTACTAACAGTTCGAACTCACGGGGTGTACA AAGTAACGCAGGAGCAGCAGTCGTGCGGTAATAAACGGCGAAATAGGCGT ACCACTGCTGTTGATGATGCTTGCAGGAAAAGTAGGTGAAATCTTGAGAC AGCTTCTCAAAACAGCTTCAAACAAACCTAGTGAATGATACGTTGTATAA TTCATACCTTGTACGTGGTAAAAATACGTGGTACGTAGTACAAAAAGAAA CTCCTGTATTGAGGCCCTTTCTAATCATTTCCGTATTTTTGCCGGGAAAC AGAGAACCATTCCTGGAGACCGAAAATCTCCGACAATGTGCAGGCGTTCT TCTCGTTTTCCCTGAAATGAGCGCTGCCCAAAAAATCCCGAAATGGTACT CATTTCAGGGTTCCCGGGAAATTTGAACCCGCATTTCGGGCAGACGTGCC TCCAAGTTCGGGCACGCCTGCATAGGTACTCAGTTCACACGAGCTGTCGT ACGCACGCCATCCCCAGGCCGACACAACCACACAGTGACTTCACAGGGTC GCCCTCAGGCCATGGCTGATGGGAGGAAGCGCCAAGAGCCTTCCGGACGG CTGCAGTCCTCGAGTCGAATCAGGCGCCGACACACACAACAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGAGGGCGACGATCATGACTGCCATGA CTGCCATGGTCGTTGTCGCGAGCGTCGTGGCGTCAGTAGTGGCTCTTTCC CATGCCTACATCCATGGTGTAGGCTTCGCACGACAACTGCTGCTGCTGTG GTACGCTTGGCGTCTAGAGTTCGGATGCGGCGTGACTGCTGTGGGCGGGA ATAAGCTCGGGCTTCAGAACAAAAAACAGAGAAAAGGCATTTTGAAAAAA AATACTCGCCCAATCGTTTAGAACAGAGCGAAACTCAGTTCATGTTTCAC GGGAATGGTTATCTGTTTCCCGGCAAAAATCCGGAATGATTAGAAAGGGC CCGAGAGGGTGGCTCTTGTCAAATTTTTGACCGTATTCAAGATCAAAAAC AAAATTGGATTTTGATTTTGATTCCGTGTTGGGTCCGATCTGCCGCGGCT TGCGTTTGTCCAAAATCAAAAGCGGATAAAATAAAAAAAACAGGGGTCAC GGACAGGTGGTGTGTGATATGAGCATGCCGTGTCTCGATTCCAAGACAAG TGCGGGAGCTGTCGTGCCTCAAACGAAGAGCACGATGGTGCCCCACGTCA CCCTGACTCAGGCGCGTTGGTAGTTCTTTGGTTGGGATCGATAACCGAAG AACTCGGCAAGAGATGAGTAAGTACGTGTTGCACATCTGCCCTTTTTTGG AGGTAGCGGCCCTGTCAGCTACTCAAACAGCAGTTGAGCAACAAACTTCC TGCACACTTCTACACACTTGAGTGCTGCTCTCCGGATTCTAGTCGGAATT CGCTCAAACAAAGTGATCTGTATGCTGCGTGATACCAGCTTTCTCCGGAG CTAGCACATGTGTACAGCCGGGGTCTACACGTTGTGATGTGGTCAGCTAA GCAAACATATGTAGTGTGCACCATGTGCTCCCGGAATGCACAGCAAACAC CTCTCTGTCACATATTCTAGGTCTTACTCGTTTTTGAGCCGCGTTTTGGA TCTATTGGCGGGAAGGAAAGTGTTTTTTGCTTTCCTTCCCGTTTCGGACG AATAAAACTGAAATCCAAAACGTGGTGCGGGCGGATGAATTGTTGACCTA TCAGTGACATATTCCGAGTTTGGTTTTTGATTTTTGATTTTTGAATGGGC CCAGAACGCTTTGACAAGAGCCACCCTGACTCCCCACTCCCCACTGCTGT GCGACCCCGGTTGGAGCGTCTATCATATCATACCTACCCGAAAGGTGTAG AGTGGCGTCCAATTAATGGGATGACAAGACACACACAGTATCAAAGCACG GCGGCGCTTCAGAACAAGAGCAGGTACATTTCATACCCCTGTATCATACA AAGCAGACTGCACTGCTGTATTTGTATAATACTCTGTACGAGTAGTGTGT TTTCACATTTCACTCACCATATCATAGAGTATCATATGGACACAGCGTTA TCTGACGGAGTTACTCCGCATCGCACATCGCGTGTTGTTGTGATGTACAT ACTTCGTACAGCAGCACTTCGGTTTTCCTCTTGCAAAATTACTGCTGTAT GTACCGGTACAACGCAAATCACACTCAGCACGTACTGAGTGTGATATTAT TTTACAGCAGTAGCTCTGTCTGCTGTATGATATGTGCGTGAATCTCAGAT CTCGTCTACAGCAGTAAATTGGTAGTCCTGTATGATGATATACGACTCTG TCCGGGAATAGTGGCCGGTACAGACCAAATGGTTCATAACTGTACAAAGT GCCCACCAAATGTCTTTTGGTCGCGGGTTCGAGACCCAGTAATGTAGTGT TTTTTTTCGTCTTCGTTTTTTTTGTTTTTTTCACCTTCTTTTTTTCACTT ATTTTTTCCATGTTCTTTTTTCTTGTTCGAGCTCATTTCGTTTTTCCTCC GGGTGGAAGGCCAACTGAAATTGGAATCATACAATAGGGTATTTAACCGC TAGCCGAAACACTCAACAACCACGAGAAAAAAAATGGAGGTGAAAAATGT CGTATTTTTCGCTCAGGGCGGTGGATGCAAAATGGCCCTAAAATCCATGG CTCTACAGTACGTGGTGTTGTGATGGGATGGTATAGCATCACTGGATGGG ATGGTAAGGTGATGACAGGGTAGTGTGGGAGTGGTGTGGTCAGACCCTAC TCGGAGCACGCCGAGGCTGGGTAGGTGATGGAGGTGACGAATGGCACTAC AGCAGTCCGGACCAACTATGTATAACCTGGTCTCCGCGACAGTCGAACTG TCTGCGGCAGCTGTGTCGACACATCATCGCGGAAACCGTGGAACTCGTAG CCTGAGGAGCAGAGAGACTAGGAGGTACCACGTTAGTAAGCACCCTCGTC GACCTTCACGTTGACGCTGGCCGGGAGTGTCGTCCCCAGCCCGCCTGAAC GTAGACGAGTACCGAGCTTGGCAAAGATGGATGGAACGGAGGAAAATTGC AGCTCGAACGAAACGGAAGCAAAAAAACTAAAATCGACCCGGTTTGCTCT GGGATAACCCCACTATCCCCGGGGGGGGGACGTTTGAAGGCTATCCCCGG GACCTTTCATCCAGTTCATCCACTGTTTTCCCTCCCTCAAGTACACCCAG TGGTTTACTGACTTATTTTATTGCAATTATTTACACGGAATGGCTCATTT GTGAAACCGGCCACTTATTCCCGGACGGTTTCAATTCCGCCGCGCTAACT ATCCCAGCTCATCTCTTTCCAGTGCTCCGGGAGTGCAGTGCTACCGTCGA TCGTTGTTGTTGTCGCTCTTCGTCGTTGTTGTTGATGATCATTACTGCAA CCATAAATTATGGTTGTTACCACCACCACCACCACTACTACTACTACTGC CATGTTCCGTCGTATGAAGCTGTCGTTATTTGTGTTTTTTTCTGTGTTCT TGCCCACACTCTTCTTCGTTTTACCACGTGTATTGCACTACCAGGCGTCA GCCGTGTCTGTGCTCTGCAGCACAGCCACAGTCTGGACGGTCATCTCATC GTCCGCACCAGCATCATTGCATGTGTACGTGATACGTACCAGACGCCACG AAGCAAGAGCTGGAGCACACCGCCGAGGCTGCGACGGTGGAAGAGCGGCA CGGTGGTAAGGCACGGCAGCAGTTGCAGAAACCACTCGGCGGAAACCACC AGCGGGCACCATCAGCTGGACCAAAATAAAAGCAAAATTATCCAGCGGAA GAAGCGGTAGCAGCAGCAACAGTAGCAGCAAGAGCAGCAGCGCAGCAGCA GTGTTACGAAGCAACAGCAGAGGCGGCAACGAACGGTTGTAGATAGCACG TATCATTTGCGGGGGGATGTCGAGCCCGAACTCTCCCGCAACCGGGTCTC CCGCCCTCAGCCTGGAGCTGGGCAAGGCCGAGGCCAGGCAGTCCAGCAAC CTCCGGGTGACCACCAGGGCGATCGACGCCCTGCACGCCCGCATCGCCGC GGCCAAGCGAGAGCTCGACCAGCTGCAACAGCAACAGCAGCAACAGGAAG AAGCGTCGGCTTCGGACTTGTCGCCGGGGTCGCCGTCAGAACCGGCAGCG GCAGCAGCAGCGGCGGCGGCGGCGGTGGCGTTAAAATCTCGAACAGCAAA GTCTTCACCGTCCAAGGGCGAGGGCTCGGCTTCCAATTCTCCCGTAGAGG CGGGTGATGACGGTGGTGCGGTCAAGAAGACGGGCCTCCAAGCGATGGAT CAAGAAGGCGGCGATGCAGGAGGAGGTGAAGGTGGAGGTGGTGGTGGTGG TGATGGTGATGGTGGTGGTGGTGGTGACGGAGCTGTTGCGGGGATATTGG CAAAGCTCGCGAGTGATGTCGCAGGGCTGAACACGCTGGAGGCCGTGGGT TCGGAAAATAAGAACTTTCACGCCACGATTTCGAAGCTGGCAAAAGCGGC AGAGAAGGTGATTTTGGTGTATCCGGCGATCGTTCCGCTCATGTGTGATA GTATCTACCTGGTACGCGGTTCTTTGTCTTGTGCGTCGGGTTGTGTAGTA AACTTTAACTTTCGCCCCCTCCCCCCAAACCAAACCAAACCTCCAACCCC CAACCACCGACCCCCGACATTATGTCTCAGCTCACACGCTGCTGGAGAGT CAAGAAGAAGGCGGCAGAAATAACAAAAATGCTGCTTAAATCAATCGCCA TTCGGCCATTTGTATAAATTTTACAAAATTGCAATTTTTTTCAATAATGG AAGTCTGACTATTGCAGCGGCTGAAGAGGTGGGGTGGGGGGGGTAAAGCA CCTGATGAAATTATCTCGCACTTTACCCTGGAGGAGACCAAGGAGCAATA CGATATGGTCGGACATGTTAGAACGAATCCTTTGAAACGCAGATGTTGGG GGGCTTACGAAAATTGTACAGAGCGTTTTCTATCTTTTTTTATGTATGAT GTGATAGGAAATACTTCGAAGTAGCTTTTTACTGGTCGGACATGTTAGAA CGAATCCTTTGAAACGCAGATGTTGGGGGGCTTACGAAAAATGTACAGAG CGTTTTCTATCTTTTTTTATGTATGATGTGATAGGAAATACTTCGAAGTA GCTTTTTACCTCTCTCTTGCTCCCATCTTTATTTTCAGATGTAGTCTCAG AAACCGACCCCCATGCTCAAGGTAGACGGTGTGGATGGATACCCGTCCCT CCTCCCGACTGAATGAAACACGACGGAAGACGGGCGGCGGCGGTTGGTTT AGATCGAGTCTGCATTTGCCTAAGGAGAAGAAAAAAAAAACACAAAACAT TAATGTCCTGTAACATTTTGTTTTTCCTGTCCCCCGGTCCCCCCCTCCCC CCCGACCGAAAAAAAAAAAAAACGCGCCAGTCAACGCCAACGCGGTTCTT AAACCTCCTTCTTGTGTAGGTAGAGGAAAAAAAGGTGGGGGTGGAGCCTT TTGTTTTCTGGCATTTTTTTTTCGACACGGGCGGGAACATGCACGTGTTG CATACCCCGTGTAGCATTATGTGCGACAGCGACAGCCCGCCCCTTACACC CGGCATCAGCGTTTCGTCCCCTTCTTGACGTGGACATCAGTCAATGACAT CGCACCTCGGAGCTACTGTAACTGCTGCTGCTGTCGTTGTGAATCGCACT GCTGTACTGCTGCTGTTGTACTGCTGTGTTGTTTGATGCGTCGTTCGTTT ATTGGTGTTTTGTTTTGTTTTTTTAAGCATTTCGGCGGCGACGTGGAGAG CGTCAGGAGGACGCCGCCCTTGAAGGAGAAGGCTCTGCACACGGCCATCA CCACGCACCTCTACCGCAGGGGAGCCTTCCGCTCGGCGGCGAGATTTTCG GAGGTGCGCAGAAAAAAATATATATATCGAAGTGCCACAGTACGTTGTGG TATAATACGTAGCGCCGCATTACGGGTACTAGGGTTGGGGTAGGGGGGTG GGGGATTCTTATAAGTACGAGTATTTCTTCTTGGTGTTGACAGTTTAATT GCGAATATAATTCGTATTATTTCGTATTTGAAAGTATGTATGTCGCTACT GCTGTGATATTCACATGTCGGTTTCAAATTGTTTGTGCTCTTTTGTTTCG TTTTTTCCGTCGTTTTTTGTGTTTGTTTTGTATTGCAGGACTCGTCCGCG TCGGTACCGCCGGACACTTCCTCCCAGCTGGTGGAGATGCACACGGTGCT GGACGCGCTAAACAAGCAGAACCTTGCTCCGGCAGAGAGGTGCGCAACAT ACACAGCTAGCAGCGGCTGTTGTTTCTGACTGACTGAAGTCGACCAGTCT TCGCCCTTGCTTTGCTGTAATTCGTGCTTGGTTGGTGGGCGGTTGTGCAT GTACGGTAGCGTTCGGCCTGTTTTTTGTTAGCCGCCCGCGTTGGGTGCGT GTGTCTACGGTAGGGTACTGCATTGCTGTCTGTCGCTCTCTTTGTCTTGC CGTGCCAGGGGAAAAACGTTTTGTTTTTCGGGCAGACGCCAAAAAGGGGT ATATCGCCTGGTTTCCGCGCCACAAAGCGGTACGCCAAAATACACCTGGG CATTGAAGCCCCGTTCGCGTCGCTGATTGGCTGGTTAAACCTCGTATCGC TTTTTGGCACCAGCAGTCGGCGGTACACCACATCTGGGTTTCTCACGTCG GCTGTCGCCGCTTTTTGGCTCGATCCGAACCGCTTTCTGGCGGGATATAT CCCAGGCTATTCGCCCAACAGCCTCTTACACTTCCAAGTCACGCATCAAG CAAGGAAGCCACGTCACCTAATTACAGAGTCCCTGGCCCTTTAGTCGGTG AAGAACCTCTCGGCACGTTCTCCGCACGTTTTCTCTACACCCGACCCCTT CGGGACCTTAAAGCTTGCTGCAAGCTGGTGCGTGCTTCTGCGGTGCTCTG CAAGAAGCTGGCAAGAAGGCCAGAACGTTTACCACTGCTGCTGCTGCTGC TGCTGCTGCTGCTGCTGCTGTATAACCAGAAGAAGAGAGCAGTGTTGTAG TGGACCCACACACACGAAGCACGAAGCACGAAGCACGCATCAGTTGCAGC AAGCTGTAAGGTCCCAAAGGGGTCGGGTGCAGAGAAGATGCGCGGAGAGG TTCTTCACCGACTAGAGGCCGGAGGTTGTGTAAAGGGGTGACGTGGCTTC CTTGGTTGATGCGTGACTTGGAAGTGACAAAGGCTGTTGGGCGAATGGCC TGGGATATATCCCGCCAGAAGGCGGTACGGGTCGCGCCAAAAAGCGGTGA CGGCCGACCTGAGAAACCAAGATGTTACGCACCGCCGACTGCTGATGCCA AAAAGCGTCACGAAGCTTAATCATGAACCAGCCAATCAGCGACGCGAACG GGGCTCAAATGCCCAGGTGTATTTTGGTGTACCGCTTTGTGGCGCGGAAA CCAGGCGGTATACCGCTTTTTGGCGTCTGCCCTTTTTTTTCATCGCCGTC GCCGATTCGGTGCTTGCTTCTTGATGCCTCCTCGGCGGGAGAGCAGGAGA GGGAGGGAGAGAGAGAGATATAACAAGAGGGAGAGAGAGGGAGAGAGAGC ACGCTGGACGTCTCTGATGTTCTGGGCTGTGTGTTTACGGGCCCACGCGT TTTGCTGTTTACCCGGACGTGGGGTGGGTGGACGATTCGACCCTAGGCTT GATTTCGCGAACACCCCACCTCTGTCCCTGCCTTTGCCACCTTGAATAAC GCCCACATGTTTGGTTCTCGTGTGGTGCTATATATACATGTAGCTCTAGA AGGGGCAGGAAGGGTAAAAATAATGGAGTGATTTATCAACAAATGAGGAG TAACCCCCCCCCCCCTCCGCTCCTGCCGCCGCCACCACCGCCAACACCGG CGCCGCTCCTTTTCGCGGACGGGGCAAATATATATAAATGTCCTCACTAC GTTCTCGTACCACACGCGTCAATCATACCGGCACCTTTGATCATGTTGCG GAGAGGGTCACAGACTAGTCTTACGAATCGTCCCGGGCAGCCTTAAACAC TTCCTTCCATCATACCTGGTACTATGTACGTTTTATGACATCGCTATGGT ATCATGTGGGCGATGATATCATGTGATGGTACACAGTACACAAACAGTAG TAGTAACATCAATTCGTATGATACGTATTATACAGAGAATCATCAACACC CTCGGATTTGTTTTTTGTCCTTGAAAAATTCCGTTTTTCCCGCCACGCCC GATCGATGGATCGATCTCTTTTATTTCACTCGCATGCGGGTCCCACAGGT GGTTTGAGAAACGACGGGAAGCGTTGGAAGCCGTGGGCAGCTCGTTGGAA TTTCAATTAGCCCGGTTACGTTTCCTCCGTTTCCTGAAGGTGAGAGAGAG GGCGGAAAGGGGGGGGGGGGGGTCACGTGAAATGTATGTGAATCTCGAGG GGGAGGGAGGGGGGTGCAATGGAGGGCACGTGGCGTGTCCCCTTTGTTGT TGTTTATTGATTCGCGGTATGATACAGCTAGTTTTTGTTTTTGTGCGCTT GGTTGTTTTCGATTGATGTCGTGTAGAGGTTGGGAAGAGGGTAGGTAGTT TTTGTTGTTGTTTTTTTCCTTATCGTGAGTACAGTATCACATGGGGAAAA CCAAGATTGATGCAGTCATGTGGGTGCGGGCCGGAGTTAGATGTGATCGC GATCCAGGTATTTGTTTCCTGCCCTCGTGTGACAAAAAAAAAAGGGCGGT ACGGGCCTTGACGGCTGTCTGTAGGATTGTGGTCGTGTATGATGGGTATG ATATTGAGCCCCCTCCCCCCCGTGGATGATAGCGAGTACCCCCCTTCCCG TTTTCGCTTTTTAACCCCATCACATGATGTTCTGGTCTACGATTGTTTAT GGTACAGTGCTACTTGCACACTTTCTGGCTGACTAGCTGGCTAGCCGCAA AATCTCGCTGCCCCCTCCCCCTCCCCCCTTCGCGTTCGATCCTGAGCCAA CAAATGCCCGCCCGCACCCACACCCACACCCATTCCTGCAACTATCATAG TCGAACACGTCGCGGCGCCTAGCGCTTCTTCCTGGTTGGTGCAAATGTTG AATGTTTTCGTCTTGTGGCCGGTGAAAAGCCGATCAATTCATGCTCCTTA CCGGCATCGTACGTCGTATGATACACATATACCGTAATCATGCGAGTCAT CGCACCCCCGTGTTAGCTTCTTTGCATTCCGTATTGCTCCACAACCAGGA GAGTACCACTGTCGAAAAGGGTGGTTTTGGAAAGATCTCGTCGAGAGCTT TCGTATGACGGGTCGTTTGGTGTTCGCACTCCCCTGGTTATGGAGCTATA CGGAATGCAAAAAAGCTAACACGGGGGTGCGATGACTCGCATGATTACGG TAATACACGTATCCCTAAAAGTACCATGCACCTAAACATTACACACTTTC GAAGTACCTGCATGCATGTATCACATACATACAAACGAGCAAACAATTCG TGAATACTGCGGCCATGCACTGCACTTGATCGCACGAGACGCACTGAAAC ATGAAACGCACACCAACGCACACATACATACATACATACATACATACATA CATACATACATACATACATATATATACACATACATACATACATACATACA TACATACATACATACACACGAGCATGCACGAACACACGCACATACACGCA TTCCAAACAGCGCATCTTCCTCTACCCCTCCATTTCCTCCCCTCTCGCAC TTGGTTGTTCCTTGCTTTCGTCTCTTCACACACCTCGCTTGATCCTCGAT CTCTCTTTTTTTCTTCCAGGAGAGACGTATCGTCTCGTCAATTTCATGCA CATTGCAAGCCTTGCGATAGCATAAAACTTCGTGTATATACATACTTCGA AGTGTATACATACTCCGGAATATTTACTTTCATTTTCGATTGTTTTGTCG AGTATTTTATTTCGTCTTTTGCGTCTCGGCCACGACGACGGAACAAACCT CTTGCGTGGGCAGGATCTAAGATACTCTGTGTACGCCTGTTGTTCTTTTG TTTTTCGGTGTGGATGGCCTTCCTCCGTCACGTTTCTTGTTTTCTTTTTC ACCTACTTGTATACTGTATATGACCTATGTATATCATAGCACTTTGTGTA TGTGCGCCCGCTGGTTTTGTGGGAGAATAAAAAATAACGACAACAACAAA CAACCACCAACAACAAGAACAATGAGAATAAAAAACAACAACAACTTTAC AGCAATACCAAACACGCGCACAAAAGACAAGCACACATGCACCCATGGCC ACGAACACAAACAGCCGCGCGGCACCCCCTTGCCATATCGTACTTCCATA CAGCAGTATTCTGTACTTTTTTTTTTTCTGTGCGCCTACCATATCATACC TGCTGCTGCTGCATTCTTTGTTCTTTGTTTTCTGCAATTCCTAAGTACAG AGCGCCGATCCGAAGCAAAGGCGAGAAGCGATGCTGTACGCGCGGGAGCG TCTAAGACCGGTGTCGGGGGGGCACATGCGAGAGCTAAAGGTGAAACGCG ATGATTTTTTTTTAATTTTGTTTATTCTTGACTTGTTGTTATTTCCTGAT TTGTTTTGATTTTTTTTTTATTCTTGTTCTTGTTCTTGAATTTGAAACTG GATTCGAAGTCGGTATATACCGTAAACGTCGGAGTTTTCCCCCCGGAGGG GCCCGGAGGGGGGATCTTTTTTTCGGCTGAAATCAAACCCCCCGGGGGGA AATTGACGTACCGGGGGGGGTTGGTAGTTCTCTTTTTCCCCCGGGGGGTT GTGCAGAATAAATGGTGGGTCCTACACACGCAGAGTTGCAGACCGTGATG GATAATGTTTACGAGCAAGCATACAAGCGGCAGAAGGGTACGGAAAAGAA CAAGAGCACAGAATGTGAAGAGAAAGAAGAAAGCAAGGAGGGCAGCAGCG CGTAGTAGGTACCCTGAACACAAAGTGGCATGCCAATCGGCCGCGGTGTA ACACACATCTCGCTCGAAGCGCAGAGGTGCAAATGATTTTTCTGGACCAT GTCATGCTTTTGTGCTTTGTGATGCAAAAAAACGACTCAGGCACACGTGA AATACATCCCCCCCTGGGGGAACTCGTGAAAAAAATGTCCCCGGGGGGAA ATTGACGTACCCCGGGGGAGCTTTTTTTTTTTTTGGCGAAGACGATCTAC CCCGGGGGTAAATCAAAGAATGCACGGTGGCAGGCTGAAAAGGCAATGGG GGGGGGGGGGGAAACTCGAAGGGGGGGGGTTAATCCCGACGTTTACGGTA GGTGCGTAGTGCGGTTGAAATTTGAAGTTGGCTGTCCTTGTACTGCTGTA CTCGTGTATTTTTTTTTTTCTTTTCCGTTTCACGAGAAAAAAAAGTCGAC AAGGGGGAACAAAAGGACGGTCGGAACTTTCTCGTGGATAAAAATTGAGG CAAGCGCCGCAAAAAAAAGGAAGGTGTGGAGAAATTTGAGGCAAGTACCG CAATAAAATGAAAAAAAAAAGGTGTGGAGAGAAAAAGAAACTGGACCTGC CTCTGTCCGTGTGACCAACCGACCTCGGCTGGTTCGCCTATGCATACCTT ATTTATATCGAAAGGTCTAAAGACTGGCGTCTATAATAGATGGGACGACG GCACACACACACACAAGCACTTTCAGCCAGCAGAGCAGAACAGCAGTAGT GCTGGATCATACTGTACCGATTTGGATTGGAACGGTTTTGGATTCCCGTC TCCGATTTATCACTGTCATGTCTCACGGTCTCGTGAAATTTCCGAGAATT CTCCCGAAAATGTATTACCTATTGCAGCGAGTCGCCTGTGACTCAGGGTG ACGGGCCGAACAGTAACAAACAAGGGCCAAACGGAACAACTTATGGCCGT CCATTTTTGTTGTTTTTTATTTTTGTGTGTATTTGGTGTTCGTTGTCTCC TTTTTTTGTTTGTTTTTGTATGTTGTTTGTTCTCAATTGCTTGTCTATGT ACTCTTTCGGTCACCATACACAAGAAAGACAGACAGCAGTGATTCGTTGT TTTTTGCTAGTGGCTCGTTTGTTGAGCGCCTGGTTTTGTCGTCCCCACGG GCTGGTTGGTCTTGGATGATGGGCTCAAGCTGTGAGAGAGAGTCAACAAC AGCAAGAACAACAAGTTTTTCTTCTGGCCTACCCTGTACTTTTTTTCCGT GACATCGCAAGCGTTCCCCCCTCCAGTTTCTCTGTCGCTGGAAACAACGA AGACCTCGAAGACAAACAGTGCACTTGTCTGTCTGTCTGTCTGTCTGTCT GTCTGTATGTCTGTTTGTCTGTTGTCTCTTCGTCCCTCTTGTTAACGCGA AGGCCCGAAGACAGGCACACACACACAGACAAAACACACTCGCCAAAACA CAAAATAATCAGCACAAGTCGTTTTTCCCCGAATGTTCTGTCTTCTCCTA TGCCTCTCGGTAGGGTGACGTACCAAAACAAAACAAAACAAAACAAAACA AAGCAAGGCAAGGCAAGGCAAAGCAAAGCAAGGCAAGGCAAGGCAAGGCA AGGCAAGGCAAGGCAAGGCAAAGCAAAGCAGAGCAACAGCATCCTATCAT ACACTACCTGCTTTTCCTTCTGTCTCCGCTTGTCTTTTCTCACCTCTCGG TAGAGTGAAAAACCGATCTCACGCACGGATCAACATTTCAATAGCACGCA CGTATTGTACCATACCCTCGCGCACCCCCTCCACCCATTCCAACCACCCA ACCCCAACCAGGAGTTGATGGGGAGCCTGCTGTGGTGTGGAAACCTGGAG GCGTCGCCGTACAGCCACCTCCTGTCGCTTGAGCTGTGGGCGCGCGTGAA GGAATCCGTGGCGATTGACGGCAGCCGAGTTTCCGGGCTGTCTCGGGAGA GCATCCTGTCCGTGGCGTTTCGGGTATGTGGGAGGGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGACAAAGGGAATTGCAACTCCACTC TGTTTGAGTTTTACTGCATTTTGGGGCACTGAGGGCGAAGAATGAGAGAG GACGAGAGAGAGAAATTGTGTGTGTGTGTGACATATGGAGAGAAAGAGAT AGGGAGAGAGAGGGGGGGGAAGAGTTCAGACCCCTTTCCATTCTAATGCG TTACATTGTGCGAAACTTGAAGCAGTGCAAATTTTGAGAGATGGCGACAA TAATCCATGTAATATATGTTTGTTGCGTTTTAAATACACGTGCACAGCAT ATACTTCGTATACAATTTGTTCGTGTTTTTTGTTTGTGAGCAGATATCAC ACTAACCGGCTGAACCAATGAAACCTCTCGAGTTTTAACAACGGGGTAAA GAATGTTCAATTTTTCGCCATCATGGTGTTGTTGTTGTTGTTGTTGTTGT TGTGGTTGATTCTGAGTTCAGCTCGTCACCAAGATCGTGTGTAAGTGCAC ACTGACAGGAGGCGTGTGTGTGTGTGTTTTTATTCATTTTCCGGTATATA CCGGATTTACGAGCAGCAGGGGCAATCAACACCGATTGACAAATAGATAA TCAAAAATATTAAAATATAATACCAAGATGTGTGTGCGTTCGGTCATTTG TTCCTTTATTTCTTCATGATGGGCGGCTGGGGGCAATCAACACAACTTAA TGCACTTTACTGACAGGAGGTGCGTCTGTGCCTGTGCATGTGTCTGTGTC TGTGTCTGTGTGTTTTCTCTCAGGCCGGGGTCCTAGCCTTGCCGACGCTG CTGAAGATGGCGGTAGTGGTGCGGGGCAGTAACCAAGAGTGGGACGGCAT GCAGGAGCTTCCGCTGGAGGTGCCGCTGCCGCCGGGCTTGCGCTACCACA GCATGTTCTCCTGTCCGGTCTCCAGAGAGCCGAGGTGTGTGTTTATTGTT ATTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTTGTTGTTGTTGTT TGTGATTGTTGTTGTTGTTGTTGCTCTTGTTGTTGTTGCTGTTGATGTTG GTGTTGGTGTTGGTGTTGGTGTTGCTGCTGTTGTTGTTGCTGTCGTTGTT GTTGTTGTTGATGTTGATGTTGATGTTGTTGGTTGGTTTGCAATGAACAA CTCGTTGCCATTTCGTTTTTTGGGCGATAGTCTGACTTCAACGCCCAGCT GGTTCCTCGCATCAAACGGGCTTGGAGTGTGACCCGTTGAACCGCTGCCG CTGTACCATGCCACATACATCCCATAAAGATGTGTTCAAGTACATATGGA CAACCTAATTTGAAACGCGTAATCGAACTAATTGCCCCCCCCCCCGCGCG CGCCCTCTCCCCGCCTACCTCTCAACACCAAATCCTCCTCCAACCACCAT ATCGTCATTACAAATCACGATCACAATCGGAAACCACGCTCTCGCGCGCA CACAAAAAAAAATGCTTCGTTTATAGCTCCTTGGACAACCCGCCGGTGCT CCTGAAGTGCGGGCACGCCGTGCTCCGGTCAAGCGTCGGACGCCTGCCGA GAAGTGGGTCTCGGTTCAAGTGCCCCACTTGTCCCATGGAGCAGACGGAG AACGAGACGATGGCTCTCACTCTCTGATCTCATTTGATCTGATGAGATCT GACCTGATCTGGTTTGATTTGATTTGATTTGATCTGATTTGATCTGATTT GATTTGATCTGATTTGATTTGATCTGATTTGATTTGGTTGGTGTGGCGGT GCGGTGTGTGTGTTGATTTTGATCGGCCGTATCATACCGCTGCTGCACGA CACCGCCCTTCTTCGTCCCGTGGAGCGGAGCGGGTAGACGGGCGGGCGGA GAGGAACGAGGTTTCTCGTTCTCACTTTTCAGCCTTTCTGGCAGCTGGCT GCCACAGCAGTTTCATGTGTGTGTGTTTTCTCGGGCTGAAACCTGCCCCC ATATGGAGCAAGCAGACTCGAAAGCGAGGCTAGAAGTAGTACTCGCTTTC CCTTTTCTGGCTGCCGGCTGCTACATTGTTTGATGGTTTTTCGTCGGGAT GAACCCTGCCCCCCTGTGGCAAGCAGACCGGGCAAGCGAAAAAGAAGAGG AGGGGAAGCGGCAGCGACCACCCCTCTTCTCGATTCTCTCTCCGATTGGT TTTGATCAGGCTGAGAGACCCGTCCGTCCTTCCCCGAGAAGATTGCTTAC AAGTATCACGTCATCGGCGTCGTAGAATGCGGCTCCCACCCACCTGCCCG TCTGACTTGGACCCTGACGGGTTTCTTTTTTAGGCTCTGAGCCGTCCCGT CTCTCCCCCGGACAAGACGAGACAAGACGCGCGCGGGACGGACGGACGGA CAGACGAGGCCACACATGGTCGTTCCTCGCGATTCTTCCTCAATCTTTTG ATTTTTTTGGATTGGCGGAATCCATCCCGTCCCGAGAAGGAGTCTTTCCG GTCCCGAGGAGGAAAATCCATCCGGTCCCGAGGAGGAAATCCCATCCCGT CCCGAGGAGGAAATCCCATCCCGTCCCGGGGAGGAGTCCATCCGGTCCCG GGGAGGAATCCATCCGGTCCCGAGGAGGAATCCATCCCGTCTCGAGGAGG AGGAGGAGGAGGAGGAGGAGGAGGCGACGATGATCGGGAGCAAATTTTCC GCCTGTCTGTCTTCCTTCGGGGGACCTTTTTTTGGTCGTTTGGCCCGACC TCGTCTATCATTCGTGGTCGCAGGGTGGGGGGGTTGAGACAATGATGGAT CCCGCTTCTCTCTCCATTATTTTAGTGTTGGTTGGCTGAAACGTCTTGCC CGGTGGGGGGTGGGGGGGGTGGGGACACGTTGAGCGTGCCGAGACCGTGA AATCCGTCCCAAAACCCTCTGACTTGGACTGACGAAGTGAGTTTGAAAAT CGTTGAACGGCACCTGACATTTTGACATTGGAGCGTAGTAGTGCTCTTGG GGTGCGAGGGAAGAGGAGGAGGACTTTTGACACCTCATGGTTAAGGAGGC GTGTACCTGTGTGTGTGCGTGTGTTTTGTGCGAACATCGGAAACCGCACC AACAGCAACACGAGTAGGTGGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig16:212789..229210+

>mRNA_P-littoralis_Contig16.64.1 ID=mRNA_P-littoralis_Contig16.64.1|Name=mRNA_P-littoralis_Contig16.64.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1473bp|location=Sequence derived from alignment at P-littoralis_Contig16:212789..229210+ (Pylaiella littoralis U1_48)
ATGTCGAGCCCGAACTCTCCCGCAACCGGGTCTCCCGCCCTCAGCCTGGA
GCTGGGCAAGGCCGAGGCCAGGCAGTCCAGCAACCTCCGGGTGACCACCA
GGGCGATCGACGCCCTGCACGCCCGCATCGCCGCGGCCAAGCGAGAGCTC
GACCAGCTGCAACAGCAACAGCAGCAACAGGAAGAAGCGTCGGCTTCGGA
CTTGTCGCCGGGGTCGCCGTCAGAACCGGCAGCGGCAGCAGCAGCGGCGG
CGGCGGCGGTGGCGTTAAAATCTCGAACAGCAAAGTCTTCACCGTCCAAG
GGCGAGGGCTCGGCTTCCAATTCTCCCGTAGAGGCGGGTGATGACGGTGG
TGCGGTCAAGAAGACGGGCCTCCAAGCGATGGATCAAGAAGGCGGCGATG
CAGGAGGAGGTGAAGGTGGAGGTGGTGGTGGTGGTGATGGTGATGGTGGT
GGTGGTGGTGACGGAGCTGTTGCGGGGATATTGGCAAAGCTCGCGAGTGA
TGTCGCAGGGCTGAACACGCTGGAGGCCGTGGGTTCGGAAAATAAGAACT
TTCACGCCACGATTTCGAAGCTGGCAAAAGCGGCAGAGAAGCATTTCGGC
GGCGACGTGGAGAGCGTCAGGAGGACGCCGCCCTTGAAGGAGAAGGCTCT
GCACACGGCCATCACCACGCACCTCTACCGCAGGGGAGCCTTCCGCTCGG
CGGCGAGATTTTCGGAGGACTCGTCCGCGTCGGTACCGCCGGACACTTCC
TCCCAGCTGGTGGAGATGCACACGGTGCTGGACGCGCTAAACAAGCAGAA
CCTTGCTCCGGCAGAGAGGTGGTTTGAGAAACGACGGGAAGCGTTGGAAG
CCGTGGGCAGCTCGTTGGAATTTCAATTAGCCCGGTTACGTTTCCTCCGT
TTCCTGAAGAGCGCCGATCCGAAGCAAAGGCGAGAAGCGATGCTGTACGC
GCGGGAGCGTCTAAGACCGGTGTCGGGGGGGCACATGCGAGAGCTAAAGG
AGTTGATGGGGAGCCTGCTGTGGTGTGGAAACCTGGAGGCGTCGCCGTAC
AGCCACCTCCTGTCGCTTGAGCTGTGGGCGCGCGTGAAGGAATCCGTGGC
GATTGACGGCAGCCGAGTTTCCGGGCTGTCTCGGGAGAGCATCCTGTCCG
TGGCGTTTCGGGCCGGGGTCCTAGCCTTGCCGACGCTGCTGAAGATGGCG
GTAGTGGTGCGGGGCAGTAACCAAGAGTGGGACGGCATGCAGGAGCTTCC
GCTGGAGGTGCCGCTGCCGCCGGGCTTGCGCTACCACAGCATGTTCTCCT
GTCCGGTCTCCAGAGAGCCGAGCTCCTTGGACAACCCGCCGGTGCTCCTG
AAGTGCGGGCACGCCGTGCTCCGGTCAAGCGTCGGACGCCTGCCGAGAAG
TGGGTCTCGGTTCAAGTGCCCCACTTGTCCCATGGAGCAGACGGAGAACG
AGACGATGGCTCTCACTCTCTGA
back to top