mRNA_P-littoralis_Contig1020.2.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1020.2.2
Unique NamemRNA_P-littoralis_Contig1020.2.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1020.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1020contigP-littoralis_Contig1020:9666..13931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2637
Hectar predicted targeting categoryother localisation
Exons4
Cds size2103
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1020.2.2prot_P-littoralis_Contig1020.2.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1020 10017..12904 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789360.6336148-UTR-P-littoralis_Contig1020:9665..100161680789360.6336148-UTR-P-littoralis_Contig1020:9665..10016Pylaiella littoralis U1_48UTRP-littoralis_Contig1020 9666..10016 -
1680789360.6734684-UTR-P-littoralis_Contig1020:12904..129731680789360.6734684-UTR-P-littoralis_Contig1020:12904..12973Pylaiella littoralis U1_48UTRP-littoralis_Contig1020 12905..12973 -
1680789360.6823153-UTR-P-littoralis_Contig1020:13817..139311680789360.6823153-UTR-P-littoralis_Contig1020:13817..13931Pylaiella littoralis U1_48UTRP-littoralis_Contig1020 13818..13931 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789360.6449807-CDS-P-littoralis_Contig1020:10016..115511680789360.6449807-CDS-P-littoralis_Contig1020:10016..11551Pylaiella littoralis U1_48CDSP-littoralis_Contig1020 10017..11551 -
1680789360.6538353-CDS-P-littoralis_Contig1020:11617..121241680789360.6538353-CDS-P-littoralis_Contig1020:11617..12124Pylaiella littoralis U1_48CDSP-littoralis_Contig1020 11618..12124 -
1680789360.6627634-CDS-P-littoralis_Contig1020:12843..129041680789360.6627634-CDS-P-littoralis_Contig1020:12843..12904Pylaiella littoralis U1_48CDSP-littoralis_Contig1020 12844..12904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1020.2.2

>prot_P-littoralis_Contig1020.2.2 ID=prot_P-littoralis_Contig1020.2.2|Name=mRNA_P-littoralis_Contig1020.2.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=701bp
MEGRQKEDSSVWLWKKESAVVAALRGIEEGDATESKRNGGSWEHEQKEEL
KPPDAAKTPPEPPELFPPPGMNRGEVLEGGENNEILKKKEEKKPSGDIGD
LLEAHLASLKYPAADDSVDGLSVQWDDGDRITVGSEVSSWLSRPQSVGGR
SGASGRALKFARKQREDKEQALPPVEKRLHRAKTAGGFTPLAGLVEEAVE
EALGGGAGPSDTFRDNFDGNGRLFRGIWETTYLIVVGSILWALWAYEGSS
PSVPDVITVVVSAAGSLGIVARAFSARGYIGVIYRGHVGSGIVDLHLVSA
GNLDAFFSRWGVCRSWSSGRAVRDAVAFVILSPLVLGLVLSSMTKVVHFV
FHLVVGTENNGSWELGTGVLRYRDRVVVLPFMEKRTLGIYRGRTSRIRWP
GGASRSYYGDSVKGSWALHFASRDSFLAELGCEKVFLQFGTERRLICEAG
SRVLSFVIAMRDTRGGLLLIPVDTAGGVRVQVRALAFSGAAAGVTILMGV
ECPEREPYPEDKVAETLHLQGAPFCLDVSACGIGAHKTADSQANMFCVLD
GAGAGAVTDVCPLWKCLDDMCFDSLAAAWAAGYFGGHFLSLDEYCSNDEV
RKHVGQGKGRRCVVSTPPREAPGVDYDVVLGVRAHRRGILKIPVDLPGEL
SFLPRRYRFVQPTGISGKYCLIPAGINAKWEYALGGVAEHLENCEECLVA
*
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mRNA from alignment at P-littoralis_Contig1020:9666..13931-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1020.2.2 ID=mRNA_P-littoralis_Contig1020.2.2|Name=mRNA_P-littoralis_Contig1020.2.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4266bp|location=Sequence derived from alignment at P-littoralis_Contig1020:9666..13931- (Pylaiella littoralis U1_48)
TGACGTTAGATGTCATAGTCTTTGGCCAGCGTTGCACCAAGGTACTCAGG
AACAACAGGGTACATATCTACCGCGCGTCGACCGTGCCTGAGAATCGAGC
GTGCTGTCTGTCATGTGAGAGATTACAGAGTGCGGGGAGAACCCTCCGCA
ACTTTTTTCGTAGAATTTTCCACCGGCTTCACACGCACGCGCCAGCTCTT
GCGCAGCGTAGTGCAACCAGTAGCGCTCCTCCTTTCCTCTGTCCCCATCT
GTCTCTCTGCCGCTCTTTAACTGTCTCCCTTCCTCACACTTGGTCTGAAT
CCGCCAGCGCATTCAATCTCAGCGGGCCAGCACCCACACGGGTGGACACG
TGTGTAAAAAGGTCACGCAAAAAATTACAATCTTGAAAATCTCGCTTCCC
AATGTAAAATAGACGACACACAGCTCTTGAAAATTTCGCTTTCTAACGGG
GGAAAGCCCCAGGGGCCTTCACTGTCGATAGCGATGTCGTAGTTCTTTAG
CGATCAAAATGGGCGATATCTCGCTACATGTGTCTTGCCCGTTGGTAGAT
CTCAGGCACAAAATCACACACATACACCCTCCGCAAAAACATACACATCA
TCACCGCAGCAGCCGGTTTGAACGCGGGGCTCTGTAGCGTTCATCGGCAG
GAAAGGCCCGGCACTCTTGTCGACACCTATTAATATCGACACTGGAGTCC
CAAAAGGGTCAACGTTGCATGTATTTGAAGTGCAGAGCAAAGAGTGGCAT
AGTGGCCATCTGCTGATGAGAACCTGCAAGAGGTCCCTGAGGACGTAGCC
TTGACGCAATGTCGGCATACACATGATGGCACCTTGCACGGACGCCACAA
GCTCACAATACCCACGGGTGACAATGCGTGCGCATGCATTCTCAGCAATC
CTGTCACTCTCTCACCATCATTTATTTCCTTCCGTTGGCGCTTCTCTTGC
CCCTCAAGCTTTCCCTCGCAGAGTTTGGGAGAGGGGGGGAATCACGCATC
TTTCGCCATACAGATCTCTTCTCGAAGATGGAGGGACGCCAAAAAGAGGA
CTCTAGCGTGTGGTTGTGGAAGAAGGAGTCCGCTGTTGGTGAGAAGAGTT
CATGGTTTATTATCCGTTTGTGTACTGACGTGCTAACTGGGGTTTGACTT
GTTTGTCAGGGGGGCAAGGCGCACAAGGAAAGTCACCCCACACACCACAC
TACCCCCACCTCGTCCCTCGGAGGGTGTGAAAAAAAGGATTTTGTTCGTT
TTTGACGGTTAGAAAGACAAATGAAGCAAGCCGCACAACAGGGAGCACCT
CTCGTGCCCTCTAGAACACTTTATGCGCCAGTTTGAGGTGGCTGGATGCT
CTCTGAGTGTCGTGCATCGAGGAACAAAATCACCGTTGCGCGAGGGCGTG
AGGGGGTCCGCAGGGGGATCGCAAATGCATCCGGCAACCCATCATGCATG
TTCTCCTCTCTGCGCCGCCCTTTACAAAGATTTTAGTGTAGAGACCCCCC
TCCCCCCCCTGAGAGGTCCCAAAAAAAGTATTGGGGGTGTGCTGTCGGAA
ACATTTTTTTTTGTGCGCCCTTGAGAGAGTTTTTTTTTTCCGTCGAACTT
GTTCGCAGTTGTTCGCAGTGCTCCTTCGTGGGGAAATATTTCACGGGGCA
GACATCAAGAGCGCTTTCTTCCAGACTCGTCCATAGAGAGCTGCGGTATG
ATTCAACCAAGCAACCCACTGCCCTGCTAGGTTTAGATTCTATAGCTATT
GCTCCAGATTGAGTATGTGGGCTCCTCAACTTGGCTGTGTGCCCTATACT
TTCCCAGTCGCAGCGCTGCGTGGCATTGAGGAGGGAGACGCGACGGAAAG
CAAAAGAAACGGCGGAAGTTGGGAACACGAGCAAAAGGAAGAGTTAAAGC
CACCAGACGCAGCGAAGACGCCCCCTGAGCCCCCTGAGCTTTTTCCGCCG
CCCGGAATGAACCGTGGGGAAGTGCTGGAGGGAGGGGAAAATAATGAAAT
ATTGAAAAAAAAAGAAGAAAAAAAACCATCCGGCGACATTGGTGACTTGT
TAGAAGCTCATTTAGCTTCTTTGAAATATCCCGCAGCCGATGATTCCGTC
GATGGATTATCAGTCCAATGGGATGATGGCGATAGAATCACGGTCGGGAG
TGAAGTAAGTTCGTGGCTGTCAAGACCACAATCTGTAGGGGGCAGGAGTG
GAGCAAGTGGGAGGGCATTGAAGTTCGCCCGAAAACAGAGGGAGGACAAG
GAGCAAGCGCTACCTCCGGTGGAGAAAAGACTTCACAGGGCTAAAACCGC
TGGGGGTTTCACCCGCTTTTCCGACCTTGCCTTGGACAAGGAGGTGCCCT
GCAATGGCGTCACCAAAGGGAACGGGCTGCCGCTGGCCGGCCTAGTCGAA
GAGGCCGTGGAAGAAGCCCTCGGCGGGGGCGCTGGTCCTTCGGACACGTT
CCGGGACAACTTCGACGGCAACGGCAGACTTTTTCGCGGGATTTGGGAGA
CGACGTACTTGATAGTTGTGGGCTCCATTCTCTGGGCGCTGTGGGCCTAC
GAAGGAAGTTCGCCGAGCGTGCCGGACGTAATAACCGTCGTGGTCTCCGC
CGCTGGATCTCTCGGCATTGTGGCCAGGGCATTCTCTGCTCGCGGCTACA
TCGGCGTCATCTACAGGGGCCACGTGGGCTCAGGAATAGTCGACCTACAC
CTCGTTTCTGCCGGCAACCTGGACGCGTTTTTCAGCCGATGGGGCGTGTG
CCGGAGCTGGTCGTCTGGAAGAGCCGTGCGCGATGCCGTGGCCTTCGTGA
TTCTTTCCCCGCTTGTTTTAGGTCTGGTGCTTTCGAGCATGACGAAAGTC
GTCCATTTCGTCTTCCACCTCGTGGTCGGGACCGAGAACAACGGCAGTTG
GGAGCTCGGAACGGGTGTGCTGAGGTATCGTGACAGGGTGGTGGTGCTAC
CCTTCATGGAGAAGCGAACGTTGGGGATCTACCGGGGAAGAACCAGCAGG
ATACGATGGCCCGGTGGCGCTTCGAGGTCGTACTACGGCGACTCCGTGAA
GGGTTCGTGGGCGCTGCACTTCGCGAGCAGAGACTCCTTCTTGGCCGAGC
TAGGCTGCGAGAAGGTCTTCCTGCAGTTCGGTACGGAGCGCAGGCTCATC
TGCGAAGCCGGGTCGAGGGTTCTGTCGTTCGTGATCGCCATGCGGGACAC
TCGCGGCGGGCTCCTACTTATCCCCGTGGATACTGCGGGGGGTGTTCGAG
TCCAGGTTCGTGCTCTCGCCTTCTCCGGGGCAGCTGCTGGCGTCACCATC
TTGATGGGCGTGGAGTGCCCCGAAAGAGAGCCCTACCCAGAGGACAAGGT
GGCCGAGACCTTGCATCTGCAGGGCGCACCATTCTGTCTGGATGTTTCCG
CGTGCGGCATCGGCGCGCACAAGACCGCTGATTCCCAGGCCAACATGTTT
TGTGTGCTCGACGGTGCAGGGGCGGGTGCTGTGACCGACGTGTGCCCCCT
TTGGAAGTGCCTAGACGATATGTGCTTCGATTCACTTGCAGCGGCATGGG
CTGCCGGGTACTTCGGTGGCCATTTTCTTAGCCTTGATGAATACTGCAGC
AACGACGAGGTGCGGAAACACGTGGGGCAAGGAAAAGGTAGACGCTGTGT
CGTCTCGACACCACCTCGCGAGGCACCGGGGGTGGACTACGATGTGGTGT
TGGGCGTGCGCGCCCATAGGCGCGGCATCCTCAAGATACCGGTTGACCTT
CCCGGCGAATTGTCCTTCCTTCCGAGGCGGTACCGGTTTGTTCAACCTAC
GGGCATCAGTGGGAAGTATTGTCTCATCCCCGCAGGAATAAACGCTAAGT
GGGAGTACGCTCTTGGTGGAGTGGCAGAGCACTTGGAGAATTGCGAAGAA
TGTTTGGTAGCTTGACGAAAATCGCCAAGGTGTACACAGGCTACATAATA
GGTGCCGCCTGCGCTATAGCGTATTGCACGTGTGCGAAATATCCCTTCCC
GAAATTAGTTTACGATCGAAAAGCTGTGTATCGCTACATATGGCGCCACC
TGTTATGAAGCTCCTCTGTCGAGCGAGGCGCGGGGGGCGTATTTCTGTGG
GGAAACCAACCGCCCCATGCTGCATATTGTACTTCTACAGATTATCTTGT
TGGCTTCTGTCCGTGCATCTCAAGTGGGCCCAAGTTTTATATTGTGGATA
CGCTTAGCATGGGTTGCCTCAGAACCAGCTGGTGGCGCCATCGTTTGCAG
CATTGTAGGGGACGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1020:9666..13931-

>mRNA_P-littoralis_Contig1020.2.2 ID=mRNA_P-littoralis_Contig1020.2.2|Name=mRNA_P-littoralis_Contig1020.2.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2103bp|location=Sequence derived from alignment at P-littoralis_Contig1020:9666..13931- (Pylaiella littoralis U1_48)
ATGGAGGGACGCCAAAAAGAGGACTCTAGCGTGTGGTTGTGGAAGAAGGA
GTCCGCTGTTGTCGCAGCGCTGCGTGGCATTGAGGAGGGAGACGCGACGG
AAAGCAAAAGAAACGGCGGAAGTTGGGAACACGAGCAAAAGGAAGAGTTA
AAGCCACCAGACGCAGCGAAGACGCCCCCTGAGCCCCCTGAGCTTTTTCC
GCCGCCCGGAATGAACCGTGGGGAAGTGCTGGAGGGAGGGGAAAATAATG
AAATATTGAAAAAAAAAGAAGAAAAAAAACCATCCGGCGACATTGGTGAC
TTGTTAGAAGCTCATTTAGCTTCTTTGAAATATCCCGCAGCCGATGATTC
CGTCGATGGATTATCAGTCCAATGGGATGATGGCGATAGAATCACGGTCG
GGAGTGAAGTAAGTTCGTGGCTGTCAAGACCACAATCTGTAGGGGGCAGG
AGTGGAGCAAGTGGGAGGGCATTGAAGTTCGCCCGAAAACAGAGGGAGGA
CAAGGAGCAAGCGCTACCTCCGGTGGAGAAAAGACTTCACAGGGCTAAAA
CCGCTGGGGGTTTCACCCCGCTGGCCGGCCTAGTCGAAGAGGCCGTGGAA
GAAGCCCTCGGCGGGGGCGCTGGTCCTTCGGACACGTTCCGGGACAACTT
CGACGGCAACGGCAGACTTTTTCGCGGGATTTGGGAGACGACGTACTTGA
TAGTTGTGGGCTCCATTCTCTGGGCGCTGTGGGCCTACGAAGGAAGTTCG
CCGAGCGTGCCGGACGTAATAACCGTCGTGGTCTCCGCCGCTGGATCTCT
CGGCATTGTGGCCAGGGCATTCTCTGCTCGCGGCTACATCGGCGTCATCT
ACAGGGGCCACGTGGGCTCAGGAATAGTCGACCTACACCTCGTTTCTGCC
GGCAACCTGGACGCGTTTTTCAGCCGATGGGGCGTGTGCCGGAGCTGGTC
GTCTGGAAGAGCCGTGCGCGATGCCGTGGCCTTCGTGATTCTTTCCCCGC
TTGTTTTAGGTCTGGTGCTTTCGAGCATGACGAAAGTCGTCCATTTCGTC
TTCCACCTCGTGGTCGGGACCGAGAACAACGGCAGTTGGGAGCTCGGAAC
GGGTGTGCTGAGGTATCGTGACAGGGTGGTGGTGCTACCCTTCATGGAGA
AGCGAACGTTGGGGATCTACCGGGGAAGAACCAGCAGGATACGATGGCCC
GGTGGCGCTTCGAGGTCGTACTACGGCGACTCCGTGAAGGGTTCGTGGGC
GCTGCACTTCGCGAGCAGAGACTCCTTCTTGGCCGAGCTAGGCTGCGAGA
AGGTCTTCCTGCAGTTCGGTACGGAGCGCAGGCTCATCTGCGAAGCCGGG
TCGAGGGTTCTGTCGTTCGTGATCGCCATGCGGGACACTCGCGGCGGGCT
CCTACTTATCCCCGTGGATACTGCGGGGGGTGTTCGAGTCCAGGTTCGTG
CTCTCGCCTTCTCCGGGGCAGCTGCTGGCGTCACCATCTTGATGGGCGTG
GAGTGCCCCGAAAGAGAGCCCTACCCAGAGGACAAGGTGGCCGAGACCTT
GCATCTGCAGGGCGCACCATTCTGTCTGGATGTTTCCGCGTGCGGCATCG
GCGCGCACAAGACCGCTGATTCCCAGGCCAACATGTTTTGTGTGCTCGAC
GGTGCAGGGGCGGGTGCTGTGACCGACGTGTGCCCCCTTTGGAAGTGCCT
AGACGATATGTGCTTCGATTCACTTGCAGCGGCATGGGCTGCCGGGTACT
TCGGTGGCCATTTTCTTAGCCTTGATGAATACTGCAGCAACGACGAGGTG
CGGAAACACGTGGGGCAAGGAAAAGGTAGACGCTGTGTCGTCTCGACACC
ACCTCGCGAGGCACCGGGGGTGGACTACGATGTGGTGTTGGGCGTGCGCG
CCCATAGGCGCGGCATCCTCAAGATACCGGTTGACCTTCCCGGCGAATTG
TCCTTCCTTCCGAGGCGGTACCGGTTTGTTCAACCTACGGGCATCAGTGG
GAAGTATTGTCTCATCCCCGCAGGAATAAACGCTAAGTGGGAGTACGCTC
TTGGTGGAGTGGCAGAGCACTTGGAGAATTGCGAAGAATGTTTGGTAGCT
TGA
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