mRNA_P-littoralis_Contig16.82.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig16.82.1
Unique NamemRNA_P-littoralis_Contig16.82.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig16.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig16contigP-littoralis_Contig16:297409..297930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size479
Hectar predicted targeting categoryother localisation
Exons2
Cds size381
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789763.2948453-CDS-P-littoralis_Contig16:297408..2977131680789763.2948453-CDS-P-littoralis_Contig16:297408..297713Pylaiella littoralis U1_48CDSP-littoralis_Contig16 297409..297713 -
1680789763.310146-CDS-P-littoralis_Contig16:297756..2978321680789763.310146-CDS-P-littoralis_Contig16:297756..297832Pylaiella littoralis U1_48CDSP-littoralis_Contig16 297757..297832 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789763.3264208-UTR-P-littoralis_Contig16:297832..2979301680789763.3264208-UTR-P-littoralis_Contig16:297832..297930Pylaiella littoralis U1_48UTRP-littoralis_Contig16 297833..297930 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig16.82.1prot_P-littoralis_Contig16.82.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig16 297409..297832 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig16.82.1

>prot_P-littoralis_Contig16.82.1 ID=prot_P-littoralis_Contig16.82.1|Name=mRNA_P-littoralis_Contig16.82.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=127bp
MPLLRCLQVMEHITSLGFGYSLSKSDHAARCTDGQHLTQMKERGFSREVM
MLVKPSIRLQALVSLVHKLAGTLQSPSIISHAKSDASTRSYSCLPASFVF
FESKPFSTNSVTRYIGSRNLPSAFRN*
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mRNA from alignment at P-littoralis_Contig16:297409..297930-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig16.82.1 ID=mRNA_P-littoralis_Contig16.82.1|Name=mRNA_P-littoralis_Contig16.82.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=522bp|location=Sequence derived from alignment at P-littoralis_Contig16:297409..297930- (Pylaiella littoralis U1_48)
CCGTTTTCGAGCAACAGGCAGAAGGAGGATTGGAGAGGCTGCAGGGAGCA
CTCAACAGGTGAGTGCAGACCCGAAGTGTTTGCCAGGATATTCGTTAAAT
GCCCCTCCTGCGCTGTCTCCAAGTTATGGAACACATCACATCATTGGGGT
TTGGCTACTCACTCTCAAAGTCTGCTCGCCAAGCCTAGGTTAGAGCCAGG
CGAGGCAAGGAACACACACCACGCTGCACGCTGCACCGACGGACAGCATC
TTACCCAGATGAAGGAAAGAGGTTTCAGCAGAGAGGTCATGATGCTGGTG
AAGCCCTCGATCCGTCTCCAAGCTCTCGTCTCGCTCGTGCATAAACTGGC
CGGCACTTTGCAATCCCCATCCATCATTTCACACGCAAAGTCTGACGCTT
CGACGCGGTCATACTCCTGCCTCCCGGCTTCTTTCGTCTTTTTTGAGTCT
AAGCCGTTTTCCACCAACTCTGTGACCCGGTACATCGGCTCCCGTAACCT
ACCCAGCGCCTTTCGAAACTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig16:297409..297930-

>mRNA_P-littoralis_Contig16.82.1 ID=mRNA_P-littoralis_Contig16.82.1|Name=mRNA_P-littoralis_Contig16.82.1|organism=Pylaiella littoralis U1_48|type=CDS|length=381bp|location=Sequence derived from alignment at P-littoralis_Contig16:297409..297930- (Pylaiella littoralis U1_48)
ATGCCCCTCCTGCGCTGTCTCCAAGTTATGGAACACATCACATCATTGGG
GTTTGGCTACTCACTCTCAAAGTCTGACCACGCTGCACGCTGCACCGACG
GACAGCATCTTACCCAGATGAAGGAAAGAGGTTTCAGCAGAGAGGTCATG
ATGCTGGTGAAGCCCTCGATCCGTCTCCAAGCTCTCGTCTCGCTCGTGCA
TAAACTGGCCGGCACTTTGCAATCCCCATCCATCATTTCACACGCAAAGT
CTGACGCTTCGACGCGGTCATACTCCTGCCTCCCGGCTTCTTTCGTCTTT
TTTGAGTCTAAGCCGTTTTCCACCAACTCTGTGACCCGGTACATCGGCTC
CCGTAACCTACCCAGCGCCTTTCGAAACTAA
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