mRNA_P-littoralis_Contig1595.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1595.3.1
Unique NamemRNA_P-littoralis_Contig1595.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1595.3.1 vs. uniprot
Match: O78798_PYLLI (DNA-directed RNA polymerase n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=O78798_PYLLI)

HSP 1 Score: 1409 bits (3647), Expect = 0.000e+0
Identity = 721/830 (86.87%), Postives = 774/830 (93.25%), Query Frame = 1 
Query:    1 MTKKIQIDNIKSNIEPFISNKTIIFNTLERAKLMLNETSPRSAQYFLEKELEHKLTTNPLSYLAQINNNKIKESKAHLNDLAKKILEKSRLPQELKTFMTSELLTAISLTILTKLFHKTKKSDSRISQTALIRAISDHFIRQLSLQREKQRYKEXXXXXXXXXXXTKLKESSKKKEEQKILKTDTAARTLAAKIVDVLSHPEVNVCKIYRETPSVTRPSKIRTTNYLCLSDKWAGVAKQFENTFTSLPMLCPPLTWELQETNPYNKIESIIQGINLKGGGYLTDSEIQKNKTALLKNATAMYVVCHSEESKDNLNYIQSLAFRINNDLLKIIKENKLLIPNYKENYRITRQTREEYCGSIYQSKKAEIHDSATNYIAETDFAIDIADKLQGLDLHFAVRHDGRGRIYTIAYPISPISANYMRSILTCKEDYYFSKKADRENWESLVLKLTKDLMGNNTKKSVELFKKNPGRAFDKALSDVEVIDDFSLHALKDIFINEGGQTSQLIGLDVTASGLQIMGLITRCRKALEMTQVFDQNDPTQEKVDIYHAIQMHVVRDYPIVQEMDRKTYKGIIMRMSYGEGVYSRKKTLYQYLK--DNKEFKDNKKKGTLLLDMAKAYDQAIYKEFPEFKTFTDQVDKIVNIRTKLNLGINFNISEIFKTNQYYNMDKATTYSFRDFDGKSKRVTMYIPEKITSS-YKRYEANPNARKIKRATLPNFIHHIDSLLAHLVIKEFRKELKPLFTVHDAFYVRLIDMAFLKEAYFKALQQVHDLDPWSKFLETNKISLGDLRNDHWAKKEKDLAQDLNDMISDWVLTREAIDFKRPRSNRILS 2481
            MTKKIQIDNIK NI+PFISNKT+IFNTLERAKLMLNETS +SAQYFLE+ELEHKLTTNPL YL Q+NNN+IKESKAHLND AKKILEKSRLP+ELKTFMTSELLTAISLTILTKLFHK    DSRISQTALIRAI DHF+RQLSLQR+K+ YKE           TKLK+SSKKKEEQKILKTDTAARTLAAKIV VLS+PE+++C+IY+E P    PS+IRTTNYLCLSD+W  VAKQ+ENTFT LPMLCPPLTWELQETNPYNKIESIIQGINL+GGGYLTDSEIQKNKTALLKNATAMYVVCHSEESKDNLNYIQSL FRINNDLLKIIKENKLLIPNYKE+Y + +QTR+EYCGS++++++AE HDSATNY+AETDFAIDIADKLQGLDLHFAVRHDGRGRIYTIAYPISPISANYMRSILTCKEDYYFSKK DRENWESLVLKLTKDLMGNNTKKSVELFKKNPGRAFDKALSDVEVIDDFSLHALKDIFINEGGQTSQLIGLDVTASGLQIMGLITRC KALEMTQVFDQN+ T   VDIYHAIQ HVV+ YPIVQEMDRKTYKGIIMRMSYGEGVYSRKKTLY+YLK  +N+EFK NK KGTLLLDMAKAYDQAIYKEFP+FKTFTDQ DKIV+IRTKLNLGINFNIS IFKTNQYYNMDKATTYSFRDFDGKSKR+TMYIPEKITSS Y+RYEA PN RKIKRATLPNFIHHIDSLLAHLVIKEFRKELKPLFTVHDAFYVRLIDMAFLKEAYF+ALQQ+HDLDPWSKFLETNKI+L DLRNDHW++++K LA+DLN MI +W++TREA+DFKRPRSNRILS
Sbjct:    1 MTKKIQIDNIKLNIKPFISNKTMIFNTLERAKLMLNETSAKSAQYFLERELEHKLTTNPLPYLGQVNNNRIKESKAHLNDAAKKILEKSRLPEELKTFMTSELLTAISLTILTKLFHKASAQDSRISQTALIRAILDHFVRQLSLQRDKEIYKEENDGEK-----TKLKKSSKKKEEQKILKTDTAARTLAAKIVGVLSNPEIDICRIYQENPYSKSPSRIRTTNYLCLSDEWVEVAKQYENTFTCLPMLCPPLTWELQETNPYNKIESIIQGINLRGGGYLTDSEIQKNKTALLKNATAMYVVCHSEESKDNLNYIQSLGFRINNDLLKIIKENKLLIPNYKESYMVAQQTRKEYCGSMFKTRRAEEHDSATNYLAETDFAIDIADKLQGLDLHFAVRHDGRGRIYTIAYPISPISANYMRSILTCKEDYYFSKKTDRENWESLVLKLTKDLMGNNTKKSVELFKKNPGRAFDKALSDVEVIDDFSLHALKDIFINEGGQTSQLIGLDVTASGLQIMGLITRCTKALEMTQVFDQNE-TNSAVDIYHAIQKHVVKKYPIVQEMDRKTYKGIIMRMSYGEGVYSRKKTLYEYLKTLENEEFKKNKNKGTLLLDMAKAYDQAIYKEFPKFKTFTDQADKIVSIRTKLNLGINFNISNIFKTNQYYNMDKATTYSFRDFDGKSKRITMYIPEKITSSQYERYEAKPNTRKIKRATLPNFIHHIDSLLAHLVIKEFRKELKPLFTVHDAFYVRLIDMAFLKEAYFQALQQIHDLDPWSKFLETNKITLEDLRNDHWSEEDKALAEDLNHMIDNWMITREAVDFKRPRSNRILS 824
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BLAST of mRNA_P-littoralis_Contig1595.3.1 vs. uniprot
Match: A0A8F0K156_9PHAE (DNA-directed RNA polymerase n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0K156_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 3.650e-64
Identity = 133/296 (44.93%), Postives = 180/296 (60.81%), Query Frame = 1 
Query: 1552 MGLITRCRKALEMTQVFDQNDPTQEKVDIYHAIQMHVVRDYPIVQEMDRKTYKGIIMRMSYGEGVYSRKKTLYQYLKDNKEFKDNKKKGTLLLDMAKA---YDQAIYKEFPEFKTFTDQVDKIVNIRTKLNLGINFNISEIFKTNQYYNMDKATTYSFRDFDGKSKRVTMYIPE-----KITSSYKRYEANPNARKIKRATLPNFIHHIDSLLAHLVIKEFRKELKPLFTVHDAFYVRLIDMAFLKEAYFKALQQVHDLDPWSKFLETNKISLGDLRNDHWAKKEKDLAQDLNDMI 2415
            M L    +  L +T VF++ +  +E  DIY +I   VV  +PI+ +M RK YK IIM++SYGEG  SR + +  Y +      D   K + +    K    Y  ++Y +FP FK    Q+D I+  R++LNL IN NIS I+KT QYYNMDKA TY+FR +D  SK++ MYIPE     K  ++ KR+EA  N  K+ RAT+PN IH++D++    V   FR+E KPLFTVHD FYVRL D+ F K AYF AL+Q++D  PW   L++NKI   D   D    KEK + Q LND+I
Sbjct:    1 MSLFCSNKNGLRLTNVFNKKNYDEE--DIYKSIHNGVVEKFPILDQMTRKEYKAIIMKLSYGEGNQSRSEDIKDYYRRL----DISTKSSGIASPYKITAEYPSSLYNKFPSFKLLKKQIDIIIAARSELNLPINLNISAIYKTTQYYNMDKAITYTFRGYDNTSKKIKMYIPENELYDKKANTPKRFEAKVNKNKMLRATMPNLIHYLDAIALQHVTTRFREENKPLFTVHDEFYVRLCDIHFTKMAYFNALKQIYDDRPWFSILDSNKIL--DYEIDLNNMKEKMIQQTLNDLI 288
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1595.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
O78798_PYLLI0.000e+086.87DNA-directed RNA polymerase n=1 Tax=Pylaiella litt... [more]
A0A8F0K156_9PHAE3.650e-6444.93DNA-directed RNA polymerase n=1 Tax=Desmarestia ac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1595contigP-littoralis_Contig1595:2444..4927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog438482.A4ZR96_9CAUD
Model size2484
Max annot lvl10744|Podoviridae
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0016032,GO:0019080,GO:0019083,GO:0039695,GO:0044403,GO:0044419,GO:0051704
Exons1
Evalue7.11e-07
EggNOG OGs4QBMV@10239|Viruses,4QUU6@35237|dsDNA viruses no RNA stage,4QQ7Y@28883|Caudovirales,4QNK5@10744|Podoviridae
DescriptionDNA-directed RNA polymerase activity
Cds size2484
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789762.8202164-CDS-P-littoralis_Contig1595:2443..49271680789762.8202164-CDS-P-littoralis_Contig1595:2443..4927Pylaiella littoralis U1_48CDSP-littoralis_Contig1595 2444..4927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1595.3.1prot_P-littoralis_Contig1595.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1595 2444..4927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1595.3.1

>prot_P-littoralis_Contig1595.3.1 ID=prot_P-littoralis_Contig1595.3.1|Name=mRNA_P-littoralis_Contig1595.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=828bp
MTKKIQIDNIKSNIEPFISNKTIIFNTLERAKLMLNETSPRSAQYFLEKE
LEHKLTTNPLSYLAQINNNKIKESKAHLNDLAKKILEKSRLPQELKTFMT
SELLTAISLTILTKLFHKTKKSDSRISQTALIRAISDHFIRQLSLQREKQ
RYKEKKDDKKSNEKETKLKESSKKKEEQKILKTDTAARTLAAKIVDVLSH
PEVNVCKIYRETPSVTRPSKIRTTNYLCLSDKWAGVAKQFENTFTSLPML
CPPLTWELQETNPYNKIESIIQGINLKGGGYLTDSEIQKNKTALLKNATA
MYVVCHSEESKDNLNYIQSLAFRINNDLLKIIKENKLLIPNYKENYRITR
QTREEYCGSIYQSKKAEIHDSATNYIAETDFAIDIADKLQGLDLHFAVRH
DGRGRIYTIAYPISPISANYMRSILTCKEDYYFSKKADRENWESLVLKLT
KDLMGNNTKKSVELFKKNPGRAFDKALSDVEVIDDFSLHALKDIFINEGG
QTSQLIGLDVTASGLQIMGLITRCRKALEMTQVFDQNDPTQEKVDIYHAI
QMHVVRDYPIVQEMDRKTYKGIIMRMSYGEGVYSRKKTLYQYLKDNKEFK
DNKKKGTLLLDMAKAYDQAIYKEFPEFKTFTDQVDKIVNIRTKLNLGINF
NISEIFKTNQYYNMDKATTYSFRDFDGKSKRVTMYIPEKITSSYKRYEAN
PNARKIKRATLPNFIHHIDSLLAHLVIKEFRKELKPLFTVHDAFYVRLID
MAFLKEAYFKALQQVHDLDPWSKFLETNKISLGDLRNDHWAKKEKDLAQD
LNDMISDWVLTREAIDFKRPRSNRILS*
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mRNA from alignment at P-littoralis_Contig1595:2444..4927+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1595.3.1 ID=mRNA_P-littoralis_Contig1595.3.1|Name=mRNA_P-littoralis_Contig1595.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2484bp|location=Sequence derived from alignment at P-littoralis_Contig1595:2444..4927+ (Pylaiella littoralis U1_48)
ATGACCAAAAAGATTCAAATAGATAATATAAAATCAAATATTGAACCATT
TATATCAAACAAAACCATTATTTTCAACACTCTAGAAAGAGCTAAGCTAA
TGTTAAACGAGACTTCTCCAAGGTCAGCACAGTACTTTCTAGAAAAAGAA
TTAGAGCACAAACTTACTACAAACCCTTTGTCTTATTTGGCACAAATAAA
CAACAACAAAATAAAAGAATCAAAAGCACATTTAAATGATCTTGCGAAAA
AGATTCTAGAAAAATCAAGATTGCCCCAAGAATTAAAAACATTTATGACT
TCCGAATTATTAACCGCGATTAGCTTGACGATATTAACTAAACTATTCCA
CAAAACCAAAAAGAGTGATTCCAGAATTTCTCAAACGGCATTGATTAGGG
CGATATCAGACCATTTCATAAGACAGCTATCCCTCCAAAGAGAAAAACAA
CGTTACAAGGAAAAAAAGGATGACAAAAAAAGCAATGAAAAGGAAACAAA
GTTAAAAGAATCATCAAAAAAGAAGGAAGAACAAAAAATCTTAAAAACCG
ACACAGCAGCTCGTACTTTAGCGGCTAAAATAGTAGATGTATTGTCCCAC
CCAGAGGTTAATGTATGTAAGATTTACCGCGAGACCCCATCTGTAACAAG
ACCAAGTAAAATTCGAACAACTAATTACCTTTGCTTGTCTGATAAATGGG
CGGGGGTGGCCAAGCAATTTGAAAACACTTTTACTTCCCTGCCCATGCTA
TGCCCACCTTTAACTTGGGAACTACAAGAAACAAACCCATACAACAAAAT
AGAATCAATAATACAAGGTATTAATTTAAAGGGTGGTGGATACTTAACAG
ACAGCGAGATACAAAAGAATAAAACCGCATTACTAAAAAATGCAACCGCC
ATGTACGTGGTTTGTCATTCCGAAGAATCAAAAGATAACTTAAATTATAT
CCAAAGCCTTGCTTTCCGCATTAATAATGATCTTTTAAAAATAATCAAAG
AAAACAAATTACTGATACCAAACTACAAAGAGAATTACAGGATAACACGA
CAAACAAGAGAAGAATATTGCGGCTCTATTTATCAATCTAAAAAAGCAGA
AATACATGATTCTGCTACTAATTACATCGCTGAAACAGACTTTGCCATTG
ATATAGCGGATAAGTTACAAGGATTGGATCTGCATTTTGCCGTAAGACAC
GACGGTCGAGGTAGGATTTATACCATTGCCTACCCGATTTCACCCATAAG
TGCAAATTATATGAGGTCTATTTTGACCTGCAAGGAGGATTATTATTTTT
CGAAGAAGGCCGATAGGGAGAATTGGGAATCTTTAGTTTTAAAATTAACC
AAGGATTTGATGGGAAATAACACAAAGAAAAGCGTGGAATTGTTTAAAAA
AAACCCTGGGAGAGCCTTTGATAAAGCCTTGTCTGACGTGGAAGTTATAG
ATGACTTTAGTCTTCATGCCTTGAAAGATATCTTTATCAATGAGGGTGGA
CAAACTTCTCAACTAATAGGACTAGACGTCACGGCTTCGGGCTTACAAAT
CATGGGACTTATCACTAGATGTAGAAAAGCACTTGAGATGACTCAGGTTT
TTGATCAGAATGATCCCACACAGGAAAAAGTTGATATTTATCATGCGATT
CAAATGCATGTCGTGAGGGACTATCCGATTGTTCAAGAAATGGATAGGAA
AACCTATAAAGGAATCATAATGCGTATGAGTTACGGTGAGGGTGTTTATA
GTCGAAAAAAAACATTATACCAATACTTGAAAGATAATAAGGAATTTAAA
GACAATAAAAAAAAGGGTACTCTTTTGCTCGATATGGCTAAAGCCTATGA
CCAGGCAATTTACAAAGAATTTCCTGAATTTAAAACCTTTACTGATCAGG
TAGACAAAATAGTCAATATCCGTACAAAATTAAACCTAGGTATTAACTTT
AATATATCTGAGATTTTTAAAACAAACCAATATTATAATATGGATAAGGC
GACAACTTATTCTTTTCGGGATTTCGACGGCAAAAGTAAACGGGTTACAA
TGTATATTCCAGAGAAAATAACCTCAAGCTACAAAAGATACGAGGCAAAC
CCAAACGCCCGTAAAATAAAAAGAGCAACACTCCCTAATTTCATACATCA
CATAGATTCTCTTTTAGCCCATTTGGTTATAAAAGAATTTAGAAAAGAAC
TGAAACCCCTTTTTACCGTTCATGATGCTTTTTATGTCCGTTTAATCGAT
ATGGCATTTTTAAAAGAAGCCTATTTCAAAGCCTTACAACAAGTACACGA
CCTCGACCCATGGTCTAAATTTCTTGAAACAAACAAAATCAGCTTGGGGG
ATCTGAGAAATGATCATTGGGCAAAAAAAGAAAAGGATTTAGCCCAGGAT
TTAAATGATATGATCTCTGATTGGGTGTTAACGAGGGAAGCTATTGATTT
TAAAAGACCTAGATCTAACCGAATCCTTAGTTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1595:2444..4927+

>mRNA_P-littoralis_Contig1595.3.1 ID=mRNA_P-littoralis_Contig1595.3.1|Name=mRNA_P-littoralis_Contig1595.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2484bp|location=Sequence derived from alignment at P-littoralis_Contig1595:2444..4927+ (Pylaiella littoralis U1_48)
ATGACCAAAAAGATTCAAATAGATAATATAAAATCAAATATTGAACCATT
TATATCAAACAAAACCATTATTTTCAACACTCTAGAAAGAGCTAAGCTAA
TGTTAAACGAGACTTCTCCAAGGTCAGCACAGTACTTTCTAGAAAAAGAA
TTAGAGCACAAACTTACTACAAACCCTTTGTCTTATTTGGCACAAATAAA
CAACAACAAAATAAAAGAATCAAAAGCACATTTAAATGATCTTGCGAAAA
AGATTCTAGAAAAATCAAGATTGCCCCAAGAATTAAAAACATTTATGACT
TCCGAATTATTAACCGCGATTAGCTTGACGATATTAACTAAACTATTCCA
CAAAACCAAAAAGAGTGATTCCAGAATTTCTCAAACGGCATTGATTAGGG
CGATATCAGACCATTTCATAAGACAGCTATCCCTCCAAAGAGAAAAACAA
CGTTACAAGGAAAAAAAGGATGACAAAAAAAGCAATGAAAAGGAAACAAA
GTTAAAAGAATCATCAAAAAAGAAGGAAGAACAAAAAATCTTAAAAACCG
ACACAGCAGCTCGTACTTTAGCGGCTAAAATAGTAGATGTATTGTCCCAC
CCAGAGGTTAATGTATGTAAGATTTACCGCGAGACCCCATCTGTAACAAG
ACCAAGTAAAATTCGAACAACTAATTACCTTTGCTTGTCTGATAAATGGG
CGGGGGTGGCCAAGCAATTTGAAAACACTTTTACTTCCCTGCCCATGCTA
TGCCCACCTTTAACTTGGGAACTACAAGAAACAAACCCATACAACAAAAT
AGAATCAATAATACAAGGTATTAATTTAAAGGGTGGTGGATACTTAACAG
ACAGCGAGATACAAAAGAATAAAACCGCATTACTAAAAAATGCAACCGCC
ATGTACGTGGTTTGTCATTCCGAAGAATCAAAAGATAACTTAAATTATAT
CCAAAGCCTTGCTTTCCGCATTAATAATGATCTTTTAAAAATAATCAAAG
AAAACAAATTACTGATACCAAACTACAAAGAGAATTACAGGATAACACGA
CAAACAAGAGAAGAATATTGCGGCTCTATTTATCAATCTAAAAAAGCAGA
AATACATGATTCTGCTACTAATTACATCGCTGAAACAGACTTTGCCATTG
ATATAGCGGATAAGTTACAAGGATTGGATCTGCATTTTGCCGTAAGACAC
GACGGTCGAGGTAGGATTTATACCATTGCCTACCCGATTTCACCCATAAG
TGCAAATTATATGAGGTCTATTTTGACCTGCAAGGAGGATTATTATTTTT
CGAAGAAGGCCGATAGGGAGAATTGGGAATCTTTAGTTTTAAAATTAACC
AAGGATTTGATGGGAAATAACACAAAGAAAAGCGTGGAATTGTTTAAAAA
AAACCCTGGGAGAGCCTTTGATAAAGCCTTGTCTGACGTGGAAGTTATAG
ATGACTTTAGTCTTCATGCCTTGAAAGATATCTTTATCAATGAGGGTGGA
CAAACTTCTCAACTAATAGGACTAGACGTCACGGCTTCGGGCTTACAAAT
CATGGGACTTATCACTAGATGTAGAAAAGCACTTGAGATGACTCAGGTTT
TTGATCAGAATGATCCCACACAGGAAAAAGTTGATATTTATCATGCGATT
CAAATGCATGTCGTGAGGGACTATCCGATTGTTCAAGAAATGGATAGGAA
AACCTATAAAGGAATCATAATGCGTATGAGTTACGGTGAGGGTGTTTATA
GTCGAAAAAAAACATTATACCAATACTTGAAAGATAATAAGGAATTTAAA
GACAATAAAAAAAAGGGTACTCTTTTGCTCGATATGGCTAAAGCCTATGA
CCAGGCAATTTACAAAGAATTTCCTGAATTTAAAACCTTTACTGATCAGG
TAGACAAAATAGTCAATATCCGTACAAAATTAAACCTAGGTATTAACTTT
AATATATCTGAGATTTTTAAAACAAACCAATATTATAATATGGATAAGGC
GACAACTTATTCTTTTCGGGATTTCGACGGCAAAAGTAAACGGGTTACAA
TGTATATTCCAGAGAAAATAACCTCAAGCTACAAAAGATACGAGGCAAAC
CCAAACGCCCGTAAAATAAAAAGAGCAACACTCCCTAATTTCATACATCA
CATAGATTCTCTTTTAGCCCATTTGGTTATAAAAGAATTTAGAAAAGAAC
TGAAACCCCTTTTTACCGTTCATGATGCTTTTTATGTCCGTTTAATCGAT
ATGGCATTTTTAAAAGAAGCCTATTTCAAAGCCTTACAACAAGTACACGA
CCTCGACCCATGGTCTAAATTTCTTGAAACAAACAAAATCAGCTTGGGGG
ATCTGAGAAATGATCATTGGGCAAAAAAAGAAAAGGATTTAGCCCAGGAT
TTAAATGATATGATCTCTGATTGGGTGTTAACGAGGGAAGCTATTGATTT
TAAAAGACCTAGATCTAACCGAATCCTTAGTTAA
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