mRNA_P-littoralis_Contig1594.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1594.3.1
Unique NamemRNA_P-littoralis_Contig1594.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1594.3.1 vs. uniprot
Match: D7FXZ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ3_ECTSI)

HSP 1 Score: 342 bits (878), Expect = 3.750e-107
Identity = 158/216 (73.15%), Postives = 183/216 (84.72%), Query Frame = 1
Query:    1 SVDDFMLELRGIFNRFTKHRRQYKTQRIAFNELKLTIQDGEVLCVVDFQERLQLQDQDEVQSQHWGKLATTIFPCAIFFRCDGRVWVYSFQILSDDMTQDNAWVQYVMTKLLSDDIPALLRRVGAEPMERATIFTDNCAKQFKCRFHFGWVADADIGALDKRGDATGKRVHLEHHYFGACHGKNVSDSEGAITKEYARQMVTNTRWTVASSEDLCK 648
            +VD+FM EL+     F KHRR YKTQR AF E KLTI++GEVLC+VDFQERLQ+ +QDEVQSQHW + ATTIFPC IFF+ DGRVW YSFQILSDDM QDNAWVQ+VM+KLL++DIPALLR++GA+PM R TI+TDNCAKQFKCRFHFGWVADA I  LDK G+ TG RVH+EHHYFGACHGKNVSD+EG +TKEY R+M+ N  W VASS DLC+
Sbjct:  532 TVDEFMAELKDHRASFGKHRRSYKTQRAAFTEKKLTIEEGEVLCIVDFQERLQVGEQDEVQSQHWDREATTIFPCPIFFKVDGRVWAYSFQILSDDMAQDNAWVQFVMSKLLNEDIPALLRKIGAKPMTRCTIWTDNCAKQFKCRFHFGWVADAQIMGLDKDGEPTGIRVHMEHHYFGACHGKNVSDAEGGMTKEYVRRMILNMMWRVASSRDLCE 747          
BLAST of mRNA_P-littoralis_Contig1594.3.1 vs. uniprot
Match: D7FWS2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS2_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 8.000e-83
Identity = 129/216 (59.72%), Postives = 159/216 (73.61%), Query Frame = 1
Query:    1 SVDDFMLELRGIFNRFTKHRRQYKTQRIAFNELKLTIQDGEVLCVVDFQERLQLQDQDEVQSQHWGKLATTIFPCAIFFRCDGRVWVYSFQILSDDMTQDNAWVQYVMTKLLSDDIPALLRRVGAEPMERATIFTDNCAKQFKCRFHFGWVADADIGALDKRGDATGKRVHLEHHYFGACHGKNVSDSEGAITKEYARQMVTNTRWTVASSEDLCK 648
            +VD+F  E+R I   + KHRRQ+  QR  FNE   T+++G+V+ VVDFQE+LQL +QDEVQSQHW   + TIFP  I+F+  GRVW YSFQ+L+DD TQDN WVQYVM +LLS  +P LLR+VGA PM +A IFTDNCAKQFKCRFHFGWVA + +   D  G+AT  R+ +EHHYFG+CHGK+ SDSEGAITK   R  V N  W V + E LC+
Sbjct:  522 TVDEFFEEVREIQGVYRKHRRQFHHQRSTFNETLATLEEGQVVFVVDFQEQLQLSEQDEVQSQHWQHESVTIFPAPIYFKMRGRVWCYSFQVLTDDRTQDNVWVQYVMNQLLSVHVPGLLRKVGAAPMTKAIIFTDNCAKQFKCRFHFGWVAQSGVMIRDSDGNATDMRLVVEHHYFGSCHGKSNSDSEGAITKLAERTNVMNGSWVVRNPEHLCE 737          
BLAST of mRNA_P-littoralis_Contig1594.3.1 vs. uniprot
Match: D7G3S2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S2_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 8.730e-82
Identity = 123/215 (57.21%), Postives = 155/215 (72.09%), Query Frame = 1
Query:    1 SVDDFMLELRGIFNRFTKHRRQYKTQRIAFNELKLTIQDGEVLCVVDFQERLQLQDQDEVQSQHWGKLATTIFPCAIFFRCDGRVWVYSFQILSDDMTQDNAWVQYVMTKLLSDDIPALLRRVGAEPMERATIFTDNCAKQFKCRFHFGWVADADIGALDKRGDATGKRVHLEHHYFGACHGKNVSDSEGAITKEYARQMVTNTRWTVASSEDLC 645
            +VDDF  E + IF R+  HRRQY  QR AF+E   T+++G V+ V DFQE+LQL +QDEVQ+QHW   + TIFPC I+F+  GRVW YSFQ+LSDD TQD+AWVQ+VM K+L++ +PAL+R++GA  M  A  FTDNCAKQFKCRFHFGW+A   +   D  G++T   VH+EHHYFG+CHGK+ SDSEGA TK   R  + N  W V S   LC
Sbjct:  392 TVDDFTKEFKDIFRRYIPHRRQYHNQRSAFHETLRTLEEGTVVFVFDFQEQLQLIEQDEVQAQHWQHESVTIFPCPIYFKWKGRVWSYSFQVLSDDRTQDHAWVQHVMFKILTEHVPALMRKLGAPAMVLAIFFTDNCAKQFKCRFHFGWLASRAVMVCDTNGESTNVPVHIEHHYFGSCHGKSSSDSEGANTKGVTRHNIINQSWVVQSPRHLC 606          
BLAST of mRNA_P-littoralis_Contig1594.3.1 vs. uniprot
Match: A0A6H5K4U5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U5_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 1.340e-49
Identity = 88/170 (51.76%), Postives = 109/170 (64.12%), Query Frame = 1
Query:  133 VVDFQERLQLQDQDEVQSQHWGKLATTIFPCAIFFRCDGRVWVYSFQILSDDMTQDNAWVQYVMTKLLSDDIPALLRRVGAEPMERATIFTDNCAKQFKCRFHFGWVADADIGALDKRGDATGKRVHLEHHYFGACHGKNVSDSEGAITKEYARQMVTNTRWTVASSEDL 642
            V DFQE+L+L +QDEVQSQHW     TIFPC I  +  GR               DNAWVQ+VM K++++ +PAL+R++GA  M RA  FTDNCAKQFKCRFHFGW+A  ++   D  G +T   VH+EHHYFG+CHG + SDSEGA TK   RQ + N  W V     L
Sbjct:  455 VFDFQEQLKLMEQDEVQSQHWQHERVTIFPCPIHCKWKGR---------------DNAWVQHVMFKIMTEHVPALMRKLGAPAMVRAIFFTDNCAKQFKCRFHFGWLASHEVMIRDNNGGSTNVPVHVEHHYFGSCHGNSGSDSEGANTKSTTRQNIINQTWVVQGPRHL 609          
BLAST of mRNA_P-littoralis_Contig1594.3.1 vs. uniprot
Match: A0A6H5L1G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G9_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 1.590e-43
Identity = 79/163 (48.47%), Postives = 101/163 (61.96%), Query Frame = 1
Query:   67 YKTQRIAFNELKLTIQDGEVLCVVDFQERLQLQDQDEVQSQHWGKLATTIFPCAIFFRCDGRVWVYSFQILSDDMTQDNAWVQYVMTKLLSDDIPALLRRVGAEPMERATIFTDNCAKQFKCRFHFGWVADADIGALDKRGDATGKRVHLEHHYFGACHGKNV 555
            + T+RI      LT+++G V+ V DFQE+ QL +QDEVQSQHW   + TIF C I+ +   R+W YS+Q+LSDD TQDNAW                     A P      FTDNCAKQFKCRFHFGW+A  ++   D  G++T   VH+EHHYFG+CHGK+V
Sbjct:    6 HPTERIQ--RTSLTLEEGTVVYVFDFQEQRQLMEQDEVQSQHWQHDSVTIFRCPIYLKWKARMWAYSYQVLSDDRTQDNAW---------------------ALPPWCELFFTDNCAKQFKCRFHFGWLASYEVMIRDNHGESTNVPVHVEHHYFGSCHGKSV 145          
BLAST of mRNA_P-littoralis_Contig1594.3.1 vs. uniprot
Match: A0A6H5KFD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFD4_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 9.540e-39
Identity = 65/117 (55.56%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  229 IFFRCDGRVWVYSFQILSDDMTQDNAWVQYVMTKLLSDDIPALLRRVGAEPMERATIFTDNCAKQFKCRFHFGWVADADIGALDKRGDATGKRVHLEHHYFGACHGKNVSDSEGAIT 579
            I+F+  GRVW  SFQ+LSDD TQDNAW Q VM KL+++ +P L+R++GA  M RA  FTDNCAK+FKCR HFGW+A  ++   D  G++T   VH EHHYFG+CHGK+V       T
Sbjct:  120 IYFKWKGRVWANSFQVLSDDRTQDNAWAQDVMFKLMTEHVPVLMRKLGAPAMVRAIFFTDNCAKRFKCRLHFGWLASHEVIIRDINGESTNVPVHAEHHYFGSCHGKSVQSPRHLCT 236          
BLAST of mRNA_P-littoralis_Contig1594.3.1 vs. uniprot
Match: A0A6H5JXK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK3_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 3.250e-38
Identity = 89/226 (39.38%), Postives = 108/226 (47.79%), Query Frame = 1
Query:   67 YKTQRIAFNELKLTIQDGEVLCV-VDFQERLQLQDQDEVQSQHWGKLATTIFPCAIFFRCDGRVWVYSFQILSDDMTQDNAWVQYVMTKLLSDDIPALLRRVGAE---PMERATIFTDNCAKQFKCRFHFGWVADADIGALDKRGDATGKRVHLEHHYFGACHGK-----------------------------NVSDSEGAITKEYARQMVTNTRWTVASSEDLC 645
            + T+RI  N   L    G   C  +  QE+LQL +QDEVQ QHW     TIFPC I+F+  GRVW YSFQ+LSD                         +RVGA     M RA  FTDNCAKQFKCRFHFGW+A  ++   D  G +T   VH+EHH+FG+CHGK                             + SD +GA TK    Q + N  W V     LC
Sbjct:   10 HPTERIQRNSPYLR---GRYGCFRLRLQEKLQLMEQDEVQLQHWQHENVTIFPCPIYFKWKGRVWAYSFQVLSDYRKSG--------------------QRVGAACAPTMMRAIFFTDNCAKQFKCRFHFGWLASHEVIIRDNNGGSTNVPVHVEHHHFGSCHGKRDDXFAITTAGLPTYQCMWSITTLGAATGSGSDIKGANTKGTTTQNIINQTWVVQGPRHLC 212          
BLAST of mRNA_P-littoralis_Contig1594.3.1 vs. uniprot
Match: A0A815R815_9BILA (Hypothetical protein n=2 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A815R815_9BILA)

HSP 1 Score: 71.2 bits (173), Expect = 6.220e-11
Identity = 45/171 (26.32%), Postives = 79/171 (46.20%), Query Frame = 1
Query:   70 KTQRIAFNELKLTIQDGEVLCVVDFQERLQLQDQDEVQSQHWGKLATTIFPCAIFFRCDGRVWVYSFQILSDDMTQDNAWVQYVMTKLLSDDIPALLRRVGAEPMERATIFTDNCAKQFKCRFHFGWVADADIGALDKRGDATGKRVHLEHHYFGACHGKNVSDSEGAITK 582
            + Q   F ++K   +D  V+C VD+ E   + +QD++QS HWGK   +IF    +F   G     SF ++S+ +T +   V   +  ++++ I  +L       +     F+DN + QFK R+   ++ +  +  +D         +     YF + HGK V D  G   K
Sbjct:  139 RKQSQYFEDIKTNARDNTVVCQVDYAENFSMDNQDQIQSAHWGKKFVSIFTAYAWFGGSGGDG-QSFGLVSNSITHNKYSVITCLEIIINEIISMIL------DVNEVIFFSDNASSQFKNRYVINYLTNM-LDTMD---------IDFNWSYFASAHGKGVVDGVGGTLK 292          
BLAST of mRNA_P-littoralis_Contig1594.3.1 vs. uniprot
Match: A0A816W7B1_9BILA (Hypothetical protein n=3 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816W7B1_9BILA)

HSP 1 Score: 71.2 bits (173), Expect = 7.840e-11
Identity = 45/171 (26.32%), Postives = 79/171 (46.20%), Query Frame = 1
Query:   70 KTQRIAFNELKLTIQDGEVLCVVDFQERLQLQDQDEVQSQHWGKLATTIFPCAIFFRCDGRVWVYSFQILSDDMTQDNAWVQYVMTKLLSDDIPALLRRVGAEPMERATIFTDNCAKQFKCRFHFGWVADADIGALDKRGDATGKRVHLEHHYFGACHGKNVSDSEGAITK 582
            + Q   F ++K   +D  V+C VD+ E   + +QD++QS HWGK   +IF    +F   G     SF ++S+ +T +   V   +  ++++ I  +L       +     F+DN + QFK R+   ++ +  +  +D         +     YF + HGK V D  G   K
Sbjct:  286 RKQSQYFEDIKTNARDNTVVCQVDYAENFSMDNQDQIQSAHWGKKFVSIFTAYAWFGGSGGDG-QSFGLVSNSITHNKYSVITCLEIIINEIISMIL------DVNEVIFFSDNASSQFKNRYVINYLTNM-LDTMD---------IDFNWSYFASAHGKGVVDGVGGTLK 439          
BLAST of mRNA_P-littoralis_Contig1594.3.1 vs. uniprot
Match: A0A816PPR9_9BILA (Hypothetical protein n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816PPR9_9BILA)

HSP 1 Score: 63.9 bits (154), Expect = 1.350e-8
Identity = 43/171 (25.15%), Postives = 75/171 (43.86%), Query Frame = 1
Query:   70 KTQRIAFNELKLTIQDGEVLCVVDFQERLQLQDQDEVQSQHWGKLATTIFPCAIFFRCDGRVWVYSFQILSDDMTQDNAWVQYVMTKLLSDDIPALLRRVGAEPMERATIFTDNCAKQFKCRFHFGWVADADIGALDKRGDATGKRVHLEHHYFGACHGKNVSDSEGAITK 582
            + Q   F ++K   +D  V+C VD+ E   + +QD++QS HWGK    IF    +F   G     SF ++S+ +  +   V   +  ++S+ I  +        +     F+DN + +FK R+   ++    +  +D         +     YF + HGK V D  G   K
Sbjct:   40 RKQSQYFEDIKTNARDNTVVCQVDYAENFSMDNQDKIQSAHWGKNFVPIFTAYGWFGGSGGDG-QSFGLVSNSIIHNKYSVITCLEIIISEIISMM------PDVNEVIFFSDNASSEFKNRYVINYLTSM-LDTMD---------IDFSWSYFASAHGKGVVDGVGGTLK 193          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1594.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FXZ3_ECTSI3.750e-10773.15Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7FWS2_ECTSI8.000e-8359.72Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G3S2_ECTSI8.730e-8257.21Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5K4U5_9PHAE1.340e-4951.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L1G9_9PHAE1.590e-4348.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFD4_9PHAE9.540e-3955.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXK3_9PHAE3.250e-3839.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A815R815_9BILA6.220e-1126.32Hypothetical protein n=2 Tax=Rotaria magnacalcarat... [more]
A0A816W7B1_9BILA7.840e-1126.32Hypothetical protein n=3 Tax=Rotaria magnacalcarat... [more]
A0A816PPR9_9BILA1.350e-825.15Hypothetical protein n=1 Tax=Rotaria magnacalcarat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1594contigP-littoralis_Contig1594:8416..9063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog6500.XP_005094568.1
Model size648
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.08e-16
EggNOG OGs2CNQC@1|root,2QXFF@2759|Eukaryota,39Y03@33154|Opisthokonta,3BMKX@33208|Metazoa,3D3RP@33213|Bilateria
Cds size633
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789762.6800404-UTR-P-littoralis_Contig1594:8415..84301680789762.6800404-UTR-P-littoralis_Contig1594:8415..8430Pylaiella littoralis U1_48UTRP-littoralis_Contig1594 8416..8430 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789762.6898131-CDS-P-littoralis_Contig1594:8430..90631680789762.6898131-CDS-P-littoralis_Contig1594:8430..9063Pylaiella littoralis U1_48CDSP-littoralis_Contig1594 8431..9063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1594.3.1prot_P-littoralis_Contig1594.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1594 8431..9063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1594.3.1

>prot_P-littoralis_Contig1594.3.1 ID=prot_P-littoralis_Contig1594.3.1|Name=mRNA_P-littoralis_Contig1594.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=211bp
MLELRGIFNRFTKHRRQYKTQRIAFNELKLTIQDGEVLCVVDFQERLQLQ
DQDEVQSQHWGKLATTIFPCAIFFRCDGRVWVYSFQILSDDMTQDNAWVQ
YVMTKLLSDDIPALLRRVGAEPMERATIFTDNCAKQFKCRFHFGWVADAD
IGALDKRGDATGKRVHLEHHYFGACHGKNVSDSEGAITKEYARQMVTNTR
WTVASSEDLCK
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mRNA from alignment at P-littoralis_Contig1594:8416..9063+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1594.3.1 ID=mRNA_P-littoralis_Contig1594.3.1|Name=mRNA_P-littoralis_Contig1594.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=648bp|location=Sequence derived from alignment at P-littoralis_Contig1594:8416..9063+ (Pylaiella littoralis U1_48)
TCTGTAGACGACTTCATGCTTGAGCTGAGGGGCATCTTCAACCGCTTCAC CAAACACCGGAGGCAGTACAAGACCCAGCGGATCGCCTTCAACGAATTGA AGCTCACCATCCAGGATGGAGAAGTTCTTTGCGTCGTCGACTTCCAGGAA CGGCTGCAACTTCAGGATCAAGACGAAGTCCAGTCCCAACACTGGGGTAA GCTAGCCACGACGATTTTCCCCTGCGCGATATTCTTCAGATGTGATGGCC GTGTCTGGGTATACTCGTTCCAGATCCTCAGCGACGACATGACTCAAGAT AACGCTTGGGTGCAGTATGTCATGACGAAGCTGCTGAGCGACGATATTCC GGCCTTGCTCAGGAGGGTAGGGGCTGAACCGATGGAGCGGGCAACCATTT TCACGGACAACTGCGCCAAGCAATTCAAGTGCCGGTTTCACTTCGGCTGG GTCGCGGACGCCGACATAGGAGCGCTTGACAAGCGCGGGGACGCCACCGG CAAGAGAGTGCACCTTGAACATCATTACTTTGGGGCGTGCCACGGCAAGA ATGTGTCGGACAGCGAGGGTGCAATCACGAAGGAGTATGCCAGACAGATG GTTACGAACACGAGGTGGACTGTCGCCAGCTCGGAAGACCTCTGCAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1594:8416..9063+

>mRNA_P-littoralis_Contig1594.3.1 ID=mRNA_P-littoralis_Contig1594.3.1|Name=mRNA_P-littoralis_Contig1594.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=633bp|location=Sequence derived from alignment at P-littoralis_Contig1594:8416..9063+ (Pylaiella littoralis U1_48)
ATGCTTGAGCTGAGGGGCATCTTCAACCGCTTCACCAAACACCGGAGGCA
GTACAAGACCCAGCGGATCGCCTTCAACGAATTGAAGCTCACCATCCAGG
ATGGAGAAGTTCTTTGCGTCGTCGACTTCCAGGAACGGCTGCAACTTCAG
GATCAAGACGAAGTCCAGTCCCAACACTGGGGTAAGCTAGCCACGACGAT
TTTCCCCTGCGCGATATTCTTCAGATGTGATGGCCGTGTCTGGGTATACT
CGTTCCAGATCCTCAGCGACGACATGACTCAAGATAACGCTTGGGTGCAG
TATGTCATGACGAAGCTGCTGAGCGACGATATTCCGGCCTTGCTCAGGAG
GGTAGGGGCTGAACCGATGGAGCGGGCAACCATTTTCACGGACAACTGCG
CCAAGCAATTCAAGTGCCGGTTTCACTTCGGCTGGGTCGCGGACGCCGAC
ATAGGAGCGCTTGACAAGCGCGGGGACGCCACCGGCAAGAGAGTGCACCT
TGAACATCATTACTTTGGGGCGTGCCACGGCAAGAATGTGTCGGACAGCG
AGGGTGCAATCACGAAGGAGTATGCCAGACAGATGGTTACGAACACGAGG
TGGACTGTCGCCAGCTCGGAAGACCTCTGCAAA
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