mRNA_P-littoralis_Contig158.69.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig158.69.1
Unique NamemRNA_P-littoralis_Contig158.69.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig158.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig158contigP-littoralis_Contig158:272756..273399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size598
Hectar predicted targeting categoryother localisation
Exons2
Cds size462
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789752.611381-UTR-P-littoralis_Contig158:272755..2728051680789752.611381-UTR-P-littoralis_Contig158:272755..272805Pylaiella littoralis U1_48UTRP-littoralis_Contig158 272756..272805 -
1680789752.6431105-UTR-P-littoralis_Contig158:273313..2733991680789752.6431105-UTR-P-littoralis_Contig158:273313..273399Pylaiella littoralis U1_48UTRP-littoralis_Contig158 273314..273399 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789752.6231759-CDS-P-littoralis_Contig158:272805..2729651680789752.6231759-CDS-P-littoralis_Contig158:272805..272965Pylaiella littoralis U1_48CDSP-littoralis_Contig158 272806..272965 -
1680789752.633379-CDS-P-littoralis_Contig158:273011..2733131680789752.633379-CDS-P-littoralis_Contig158:273011..273313Pylaiella littoralis U1_48CDSP-littoralis_Contig158 273012..273313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig158.69.1prot_P-littoralis_Contig158.69.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig158 272806..273313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig158.69.1

>prot_P-littoralis_Contig158.69.1 ID=prot_P-littoralis_Contig158.69.1|Name=mRNA_P-littoralis_Contig158.69.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=154bp
MNGKVTRALFIVKSHCSTSSARRGGLIPGERWHHLHRNKLNPSVTTTDRA
PKTMFFSTHSNVSLHPQHQWHRSGGGERAQRVRVRFFLSHILLPTGGGSV
GESSKLCFQCKYFIFSLQQQKTTNRIKPLFLPKWLSATNSRHPTRTSNSH
PWC*
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mRNA from alignment at P-littoralis_Contig158:272756..273399-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig158.69.1 ID=mRNA_P-littoralis_Contig158.69.1|Name=mRNA_P-littoralis_Contig158.69.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=644bp|location=Sequence derived from alignment at P-littoralis_Contig158:272756..273399- (Pylaiella littoralis U1_48)
GTGATGAGGGCTAATCCTAAACACCACATAGTCAGCTGACTACGTGGTGC
GCGTTCTTTCTCCATCTCTGACTAAACTGGGAACAGATGAATGGAAAAGT
GACGCGCGCTCTCTTCATTGTAAAGAGTCACTGTTCCACGAGCAGCGCAC
GGCGAGGGGGATTAATCCCCGGTGAAAGGTGGCACCACCTCCATCGCAAC
AAATTAAACCCCTCTGTAACAACAACAGACAGAGCACCGAAAACCATGTT
TTTTTCAACACACTCAAATGTATCTCTGCACCCACAGCATCAATGGCATC
GCAGCGGTGGTGGAGAAAGAGCACAAAGGGTTCGTGTGCGGTTCTTCCTG
TCACACATATTGCTGCCAACCGGGGGGGGCAGCGTGGGGTTGTCCTGAAA
CCCCCCACTCAATCGGCGCCCCTCGAACACCAAGTGAGAGTTCCAAGCTG
TGTTTTCAATGCAAGTACTTTATTTTCTCTCTGCAACAGCAAAAAACGAC
CAACCGAATCAAACCATTATTCCTGCCCAAATGGCTCTCTGCAACGAACA
GCAGGCATCCCACTAGAACAAGTAACTCTCACCCTTGGTGTTGATGCAAA
AGCTGAAGTGGACAGCAAAGCGAGTACACTGCGTGAAGACAAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig158:272756..273399-

>mRNA_P-littoralis_Contig158.69.1 ID=mRNA_P-littoralis_Contig158.69.1|Name=mRNA_P-littoralis_Contig158.69.1|organism=Pylaiella littoralis U1_48|type=CDS|length=462bp|location=Sequence derived from alignment at P-littoralis_Contig158:272756..273399- (Pylaiella littoralis U1_48)
ATGAATGGAAAAGTGACGCGCGCTCTCTTCATTGTAAAGAGTCACTGTTC
CACGAGCAGCGCACGGCGAGGGGGATTAATCCCCGGTGAAAGGTGGCACC
ACCTCCATCGCAACAAATTAAACCCCTCTGTAACAACAACAGACAGAGCA
CCGAAAACCATGTTTTTTTCAACACACTCAAATGTATCTCTGCACCCACA
GCATCAATGGCATCGCAGCGGTGGTGGAGAAAGAGCACAAAGGGTTCGTG
TGCGGTTCTTCCTGTCACACATATTGCTGCCAACCGGGGGGGGCAGCGTG
GGTGAGAGTTCCAAGCTGTGTTTTCAATGCAAGTACTTTATTTTCTCTCT
GCAACAGCAAAAAACGACCAACCGAATCAAACCATTATTCCTGCCCAAAT
GGCTCTCTGCAACGAACAGCAGGCATCCCACTAGAACAAGTAACTCTCAC
CCTTGGTGTTGA
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