mRNA_P-littoralis_Contig102.50.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig102.50.3
Unique NamemRNA_P-littoralis_Contig102.50.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig102.50.3 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 4.490e-96
Identity = 185/454 (40.75%), Postives = 254/454 (55.95%), Query Frame = 1
Query:   64 DGHPVGRRGAGKVFGIDKKLIRDWESQEAEL-VAFSKKENASKQRSLHTGREADTKEVEVAIVDEINTLRKNGAA-VTRDLVMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSED 1239
            DG PVG  GA KV  + +K I +W   EA+L    S     SK + +H+G +  T + E      ++      A  +    VM KLL   P   GGMP+  +PE+   F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KL  +L + A E                               +F  + NMDQ P+Q EMP +TT++KTG K A I+TGG  EK R+T+VLAV  DG+KV PRII++G PF                           R   G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH +E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG+V+TW KE W++I+  T+++C K+CGLTL LDGSED
Sbjct:  113 DGQPVGNNGAAKVLQVPRKRIIEWLKPEAQLREKVSANPKLSKAKQVHSGGKVSTVDAEQPFPCGLHQRATQAAPRLGNREVMNKLLELKPDALGGMPANAKPEEAIDFKFKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSPSAVADARSG-KLKPPERGVVSTWCKEAWESITPETVKTCSKICGLTLALDGSED 565          
BLAST of mRNA_P-littoralis_Contig102.50.3 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE)

HSP 1 Score: 303 bits (777), Expect = 3.750e-94
Identity = 193/473 (40.80%), Postives = 257/473 (54.33%), Query Frame = 1
Query:    7 AYENAQKLEVLKFSRLTCGDGHPVGRRGAGKVFGIDKKLIRDWESQEAELVAFSK-KENASKQRSLHTGREADTKEVEVAIVDEINTLRKNGAAVTRDLVMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSED 1239
            +Y    KL+ + F+R+ C DG PVG  GA KV  +D++ I  W  +EA +    K K   SK +S+H G    T EVE  + D IN  R+         VM KLL   P   GG+ +    E+   F+ +F  WY+RF +RH  SIRR+TSVGQK P G+EG A+A + KLR++L E A E                               +F  L NMDQTP+Q EMP +TT+EK G K A I+TGG+ EK R+T+ LAV  DG KV  RII+KG PF                           +T+FGYP  G+S GVQ+ SW D  +   W+++ +  RP  GS  + QR S+LVLDDFR +              T V+++ GGLTP+ QPLDR ++KE KR +R RYT ++       ++G K+  P RGLV+TW KE W  I+  T++ CFKVCGLTL LDGSED
Sbjct:   74 SYPMRFKLKAVAFTRVLCEDGQPVGNSGAAKVLAVDRRRIITWVGEEATMKNLVKEKPKLSKAKSIHAGVAPPTAEVEQDLEDYINEQRREHRGCGSMEVMNKLLELKPDALGGLTAAASAEETLAFRTKFKNWYHRFRERHGLSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGK-EKERFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIK-QRHSILVLDDFRTN--------------TTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRYTQYMASAIADPKTG-KLQPPGRGLVSTWCKESWAAITAETVKMCFKVCGLTLALDGSED 529          
BLAST of mRNA_P-littoralis_Contig102.50.3 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 4.410e-93
Identity = 187/458 (40.83%), Postives = 254/458 (55.46%), Query Frame = 1
Query:   76 VGRRGAGKV-FGIDKKLIRDWESQEAEL-VAFSKKENASKQRSLHTGREADTKEVEVAIVDEINTLRKNGAAVTRDLVMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDF--------MRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSED 1239
            VG +G+  +   + +K I +W  QE +L    S     SK + +H+G +A T + E A+VD IN  RK         VM KLL   P   GGMP+  +PE+   F+ +FN+WY RF KR+ FSIRR+ SVGQK P+G+EG AWA + KLR +L + A E                               +F  L NMDQTP+Q EMP +TT+E TG K A I+TGG+ EK R+T+VLAV  DG+ V P II+KG PF                           R   G+PA G+S GVQ+ SW    + + W+   +        M RP + S   QRP +LVLDDF+CH++E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG+V+TW KE W+ ++  T+ +CFK+CGLTL LDGSED
Sbjct:   77 VGGKGSYPIRLQVPRKRIIEWLKQEGQLREKVSANPKLSKAKQVHSGGKASTVDAEQALVDYINEQRKLHRGCGNREVMNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRASVGQKLPKGYEGMAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGK-EKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSAPAVADARSG-KLKPPERGVVSTWCKEAWEFVTSETVNTCFKICGLTLALDGSED 532          
BLAST of mRNA_P-littoralis_Contig102.50.3 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 298 bits (763), Expect = 2.260e-91
Identity = 195/481 (40.54%), Postives = 259/481 (53.85%), Query Frame = 1
Query:   25 KLEVLKFSRLTCG-DGHPVGRRGAGKVFGIDKKLIRDWESQEAEL-VAFSKKENASKQRSLHTGREADTKEVEVAIVDEINTLRKNGAAVTRDLVMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------RTSFGYPA-----------GGISLGVQ--------------KSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYT----SWIRDNYGRSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSE 1236
            KL    ++R  C  DG PVG  GA  V  +  K I +W  QE +L    S     SK + +H+G +A T + E A+VD +N  RK         VM KLL   P   GGM +  +PE+   F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L + A E                               +F  L NMDQTP+Q EMP +TT+EKTG K A I+TGGE EK R+T+VLAV  DG+KV PRII+KG PF               + S  +             GG    V               + SW D  + + W+   +  RP + S   QRP +LVLDDF+CH++E F   L   AKT V+ + GGLT + QPLDR +NK+ KR +R +YT    S + D   RSG K+  P  G+V+TW KE W++I+ +T+ +CFK+CGLTL LDGSE
Sbjct:   88 KLNAATYTRKICPCDGQPVGNNGAAIVLQVPWKRIIEWLKQEEQLREKVSANPKLSKAKQVHSGGKASTVDAEQALVDYMNEQRKQHRDCGNREVMNKLLELKPDALGGMSTNAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGE-EKERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKVKSTLPRKNSVAWEIHSANXARSGCHGGRQNDVSPRIIFKGTPFIPPTEKSWSDQRECNGWIPGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRGAKT-VIFIPGGLTSLLQPLDRMLNKQMKRLLRGKYTACSASAVAD--ARSG-KLNPPEHGVVSTWCKEAWESITSKTVETCFKICGLTLALDGSE 563          
BLAST of mRNA_P-littoralis_Contig102.50.3 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 302 bits (774), Expect = 2.400e-89
Identity = 185/462 (40.04%), Postives = 251/462 (54.33%), Query Frame = 1
Query:   25 KLEVLKFSRLTCGDGHPVGRRGAGKVFGIDKKLIRDWESQEAELVA-FSKKENASKQRSLHTGREADTKEVEVAIVDEINTLRKNGAAVTRDLVMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWI----RDNYGRSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTL 1218
            KL+V+ F+R+ C DG P G  GA KV  + ++ I +W   E  L A  S     SK + +H   +A   ++E A+V+ IN  RK+         M KLL   P   GG+ ++ +PE+      +F +WY RF KR++FSIRR+TSVGQK P+G EG AWA + KLR +L E A E                               +F  L NMDQTP+Q EMP +TT+E TG K A I TGG+ EK R+T+ LAV  DG+KV  RII+KG PF                           R+  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGL P+ QPLDR +NK+ KR +R  YT+      RD   ++G K+  P RG VATW K  W +I+   +++CFK+CGLTL
Sbjct:   61 KLKVVAFTRVVCEDGKPGGNSGAAKVLDVPRRRIVEWVRDEESLRAKVSANPKLSKAKQIHARGKASRADIEEALVEFINDQRKHHVGCGSMAAMNKLLELKPDALGGLAAKPKPEEALALNSKFKSWYQRFCKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGK-EKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTAHTAKAARDP--KTG-KLVPPGRGAVATWCKNAWASITPEIVKTCFKICGLTL 517          
BLAST of mRNA_P-littoralis_Contig102.50.3 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 1.290e-87
Identity = 163/372 (43.82%), Postives = 219/372 (58.87%), Query Frame = 1
Query:  304 MAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSED 1239
            M KLL   P   GGMP+  +PE+   F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G EG AWA + KLR +L + A E                               +F  L NMDQTP+Q E+P +TT+EKTG K A I+TGG+ EK R+T+VLAV  DG+KV PRII+KG PF                           R   G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+V+ + G LTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG+V+TW KE W++ +  T+++CF +CGLTL LDGSED
Sbjct:    1 MNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGDEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGK-EKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSG-KLKPPERGVVSTWCKEAWESSTPETVKTCFMICGLTLALDGSED 370          
BLAST of mRNA_P-littoralis_Contig102.50.3 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 281 bits (719), Expect = 8.730e-86
Identity = 182/460 (39.57%), Postives = 242/460 (52.61%), Query Frame = 1
Query:  124 IRDWESQEAELVAFSKKENASKQRSLHTGREADTKEVEVAIVDEINTLRKNGAAVTRDLVMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGET-------------------------EKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWI----RDNYGRSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSED 1239
            +RD ES  A + A  K    SK + +H G +A T ++E A+V+ IN  RK+        VM KLL   P   GG+ ++ +PE+   F+ +F +WY RF KR++FSIRR+TSVG + P+G EG AWA + KLR +L E A E                               +F  L NMDQTP+Q EMP +TT+EKTG K A I TG                            EK R+T+ LAV  DG KV  RII+KG PF                           R+  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R  YT+      RD   ++G K+  P RG VATW K  W +I+  T+++CFK+CGLTL LDGSED
Sbjct:   31 VRDEESLRANVSANPK---LSKAKQIHAGGKASTADIEEALVEFINDQRKHHVGCGSMAVMNKLLELKPDTLGGLTAKPKPEEALAFKSKFKSWYQRFRKRNKFSIRRRTSVGIRLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDP--KTG-KLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSED 483          
BLAST of mRNA_P-littoralis_Contig102.50.3 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 268 bits (685), Expect = 1.570e-82
Identity = 163/401 (40.65%), Postives = 218/401 (54.36%), Query Frame = 1
Query:  304 MAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRS-----------------------------CFKVCGLTLNLDGSED 1239
            M KLL   P   GGM +  +P +   F+ + N+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L   A E                               +F  L NMDQTP+Q EMP +TT+EKTG K A I+TGG+ EK R+T+VLAV  DG+KV PRII+KG PF                           R    +PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E +   L   A T+V+++ GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG+V+TW KE W++I+  T+ S                             CFK+CGLTL LDGSED
Sbjct:    1 MNKLLELKPNALGGMSANAKPTEALAFKVKINSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGK-EKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSG-KLKPPERGVVSTWCKEAWESITPETVSSVRKERFALGDVRAWSGENPACSVXETVKTCFKICGLTLALDGSED 399          
BLAST of mRNA_P-littoralis_Contig102.50.3 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 271 bits (693), Expect = 4.380e-78
Identity = 191/517 (36.94%), Postives = 246/517 (47.58%), Query Frame = 1
Query:   25 KLEVLKFSRLTCGDGHPVGRRGAGKVFGIDKKLIRDWESQEAELVAFSK-KENASKQRSLHTGREADTKEVEVAIVDEINTLRKNGAAVTRDLVMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARY----------------------------------------------------TSWIRDNYGRSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSED 1239
            KL   +F+R+ C DG PVG  GA KV G+D++ +  W  +EA +    K K   SK +S+H G    T EVE  + D IN       A +   ++A                        F+ +F  WY+ F +RH FSIRR+TSVGQK P G+EG A+A + KLR++L E A E                               +F  L NMDQTP+Q EMP +TT+EK G K A I+TGG+ EK R+T  LAV  DG KV  RII+KG PF                           RT FGYP  G+   VQ+ SWCD  +   W+++ +  RP  GS  + QR S+LVLDDFRCHR E F K L     T V+++ GGLTP+ QPLDR +NKE KR +R                                                        S I D   ++G K+  P RGLV+T  KE W  I+  T++ CFKVCGLTL LDGSED
Sbjct:    4 KLTAAEFTRVLCEDGQPVGNSGAAKVLGVDRRRVITWIGEEATMKKLVKEKPKLSKAKSIHVGMAPTTAEVEQDLEDCIN----EQLAASAGEILA------------------------FRTKFKNWYHCFRERHGFSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGK-EKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIK-QRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQYMASAIADP--KTG-KLQPPGRGLVSTRYKESWAAITPETVKMCFKVCGLTLALDGSED 487          
BLAST of mRNA_P-littoralis_Contig102.50.3 vs. uniprot
Match: A0A6H5JN68_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN68_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 1.120e-76
Identity = 181/510 (35.49%), Postives = 246/510 (48.24%), Query Frame = 1
Query:   25 KLEVLKFSRLTCG-DGHPVGRRGAGKVFGIDKKLIRDWESQEAEL-VAFSKKENASKQRSLHTGREADTKEVEVAIVDEINTLRKNGAAVTRDLVMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAIFALLYNMDQTPIQAEMP---PDTTVEKTGTKSACITTGGETEKLRYTV------------------------VLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSW-----CDGTQS-----------------------------------------DEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSED 1239
            KL    ++R  C  DG PVG  GA K+  +  K I +W  QE +L    S     SK + + +G +A T + E A+VD IN  RK         V +KLL   P   GGMP+  +PE+   F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G+EG AW  + KLR +L + A E     +Y   Q P   E P    D T E+  +  A  +    T   R +                         VLAV  DG+KV PRII+KG PF                           R   G+PA G+S GVQ+ SW     C+G ++                                         + W +     RP + S   QRP +LVLDDFRCH++E F   L     T+V+ + GGLTP+  PLDR +NK+ KR +R +YT++        RSG K+  P RG+V+TW KE W++I+  T+++CFK+CGLTL LDGSED
Sbjct:   41 KLNAAVYTREICPYDGQPVGNNGAAKLLQVPGKRIIEWLKQEEQLREKVSANPKLSKAKQVQSGGKASTVDTEQALVDYINEQRKQHRGCGNREVTSKLLELKPDALGGMPANTKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWTTVMKLRETLVKRAGE-----IYARRQPPAPDESPIKGEDLTSEQLVSVEAEDSRNSATWIRRQSSTRCRWRPLWRRPVRRMLASAQEERVLAVMADGKKVSPRIIFKGMPFIPPTVSGKGESILPRTNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGARASWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERGVVSTWCKEAWESTPETXRPNNGSIVQQRPCILVLDDFRCHKDEGFIAALNRDPNTIVIFIPGGLTPLFHPLDRMLNKQMKRLLRGKYTAYSASAVADARSG-KLKPPERGVVSTWCKEAWESITPETVKTCFKICGLTLALDGSED 544          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig102.50.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHT8_9PHAE4.490e-9640.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQM5_9PHAE3.750e-9440.80DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JTG5_9PHAE4.410e-9340.83DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ8_9PHAE2.260e-9140.54DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE2.400e-8940.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6L9_9PHAE1.290e-8743.82DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE8.730e-8639.57DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE1.570e-8240.65DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K583_9PHAE4.380e-7836.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JN68_9PHAE1.120e-7635.49DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig102contigP-littoralis_Contig102:265715..267672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7668.SPU_015022-tr
Preferred namePOGK
PFAMsBrkDBD,DDE_1,HTH_Tnp_Tc5,KRAB
Model size1239
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.72e-50
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota,38I47@33154|Opisthokonta,3BMCH@33208|Metazoa,3CYY1@33213|Bilateria
Descriptionpogo transposable element with KRAB domain
Cds size1239
COG categoryBD
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789359.2738094-CDS-P-littoralis_Contig102:265714..2662001680789359.2738094-CDS-P-littoralis_Contig102:265714..266200Pylaiella littoralis U1_48CDSP-littoralis_Contig102 265715..266200 -
1680789359.2837713-CDS-P-littoralis_Contig102:266295..2663821680789359.2837713-CDS-P-littoralis_Contig102:266295..266382Pylaiella littoralis U1_48CDSP-littoralis_Contig102 266296..266382 -
1680789359.2941725-CDS-P-littoralis_Contig102:266901..2670181680789359.2941725-CDS-P-littoralis_Contig102:266901..267018Pylaiella littoralis U1_48CDSP-littoralis_Contig102 266902..267018 -
1680789359.3084219-CDS-P-littoralis_Contig102:267123..2676721680789359.3084219-CDS-P-littoralis_Contig102:267123..267672Pylaiella littoralis U1_48CDSP-littoralis_Contig102 267124..267672 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig102.50.3prot_P-littoralis_Contig102.50.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig102 265715..267672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig102.50.3

>prot_P-littoralis_Contig102.50.3 ID=prot_P-littoralis_Contig102.50.3|Name=mRNA_P-littoralis_Contig102.50.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=413bp
RCAYENAQKLEVLKFSRLTCGDGHPVGRRGAGKVFGIDKKLIRDWESQEA
ELVAFSKKENASKQRSLHTGREADTKEVEVAIVDEINTLRKNGAAVTRDL
VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRK
TSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAIFALLYNMDQTPIQAEM
PPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNP
FRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSRDQRPSV
LVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKR
GVRARYTSWIRDNYGRSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFK
VCGLTLNLDGSED
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mRNA from alignment at P-littoralis_Contig102:265715..267672-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig102.50.3 ID=mRNA_P-littoralis_Contig102.50.3|Name=mRNA_P-littoralis_Contig102.50.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=1958bp|location=Sequence derived from alignment at P-littoralis_Contig102:265715..267672- (Pylaiella littoralis U1_48)
CGGTGCGCATACGAGAACGCGCAGAAGCTCGAGGTGCTGAAGTTCAGCCG GCTAACGTGTGGTGACGGGCACCCAGTCGGAAGGCGTGGTGCGGGGAAGG TGTTCGGCATCGACAAGAAGCTGATCCGGGACTGGGAGAGCCAGGAGGCA GAGCTTGTGGCGTTTTCGAAGAAGGAGAACGCAAGCAAGCAGCGGTCGTT GCACACTGGACGCGAGGCTGACACGAAGGAGGTGGAGGTGGCCATAGTGG ACGAGATCAACACGCTCAGGAAAAACGGTGCTGCTGTGACCCGGGACCTC GTCATGGCCAAGCTTCTCTCCGAGATGCCAACCTTTTCAGGGGGCATGCC GTCCCAAGACGAGCCGGAGAAGATGGAAAAATTTCAGAAGCGTTTCAACG CCTGGTACTACAGGTTCCTCAAGAGGCACCGGTTCTCGATCCGACGCAAG ACGAGCGTGGGGCAGAAGAAGCCGGAAGGATGGGAGGGCAAGGCGTGGGC ATTCATCCAGAAGCTTCGCTCAAGCCTGCGTGAGCACGCGCAGGAAGCCG TTCTCTTGGAGAGGGCAGCCCAGGCAGCGAAGGACGGAGGGACCGTTGAG ATCGAGATGGACGTCATCGCAACTGCGGAGGAACTTCTGGCTGTTCAGGG CAAGATCTTCGCCCTTCTGTACAACATGGACCAGACCCCGATCCAGGCTG AGATGCCGCCGGACACCACGGTGGAGAAGACTGGTACGAAGAGCGCTTGC ATCACGACAGGAGGTGAGACGGTGTACTAAAGGTATTTCGATTGTTGAAA TTCAGTTCAAACCAACATGGTGGAGATTTTCTGACGATGGAACAAGCGGG GAATTACAAATTTGCCGACGGCGGAAAAACGGGGAATTATAATATTTTGC ATTGCTTCTGCCGTCACGTGCACGCTTTCGTTCTTCTATTGCCTGCAAGT ACGGTACGTACTGCTGTATCGCCTGTCCCTTCGAACTACCGGTACACAGC GATGAAATTATTCATATGGTATTCCGCTGAAGTATTTTTTTTAATATACA TATGTTTTGGGGGGCAATATATATTTTACCGTATACACCGGAGTTTGTTT TATTTTACTTTTTATGTTGTGGTAGGCATTACACCCCAGGAGTTAAAGGT GTGTGTTTGTTTTTTATTATTATTTATTTTTTGTTTGTTGTGGCAGGCAA TACGATTAATAATTGTACTGCTTTGCGGAGTATTTTCTTTTAACACAATT TCCTTTGTTTGCATACGCCCCAATTTTCGCACCAGGCAAGGAGAAGCTGC GGTACACCGTGGTGCTAGCTGTCCGGGGTGATGGACAGAAGGTGCGGCCG CGCATCATCTACAAGGGGAACCCTTTTGTCGGGGGAACCCTTTTGTCGGG GGTACCAACAAGTCAGGCTCAGCCAAGAAGCCTGGCAAGAACAGCCTGTC GTACGAGCACCTCCCAGACAAGCGGACGAGCTTCGGCTACCCGGCTGGCG GCATCAGCCTCGGGGTGCAGAAGTCGTCGTGGTGCGACGGCACCCAGTCC GACGAGTGGGTAACCCAGGACTTCATGCGCCGCCCAGGGTCTACCTCCAG AGATCAGCGTCCCAGCGTTCTCGTGCTCGACGACTTCAGGTGCCACCGGG AAGAGAGGTTCCAAAAGAAGCTAATGGACCTGGCCAAGACGCTGGTGGTG ATGCTTGGTGGAGGGCTGACCCCGGTGTGCCAGCCGCTCGACCGGAACAT CAACAAGGAGTTCAAGCGAGGTGTTCGGGCCAGGTACACCAGCTGGATCC GGGACAACTACGGGCGCTCGGGGCAGAAGGTGACCGCGCCGAGCAGGGGG CTGGTCGCGACGTGGGTAAAGGAGGTGTGGGACAACATCTCGGAGCGGAC CATCCGCTCGTGCTTCAAGGTCTGCGGTCTCACCCTCAACCTCGACGGAA GCGAGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig102:265715..267672-

>mRNA_P-littoralis_Contig102.50.3 ID=mRNA_P-littoralis_Contig102.50.3|Name=mRNA_P-littoralis_Contig102.50.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1239bp|location=Sequence derived from alignment at P-littoralis_Contig102:265715..267672- (Pylaiella littoralis U1_48)
CGGTGCGCATACGAGAACGCGCAGAAGCTCGAGGTGCTGAAGTTCAGCCG
GCTAACGTGTGGTGACGGGCACCCAGTCGGAAGGCGTGGTGCGGGGAAGG
TGTTCGGCATCGACAAGAAGCTGATCCGGGACTGGGAGAGCCAGGAGGCA
GAGCTTGTGGCGTTTTCGAAGAAGGAGAACGCAAGCAAGCAGCGGTCGTT
GCACACTGGACGCGAGGCTGACACGAAGGAGGTGGAGGTGGCCATAGTGG
ACGAGATCAACACGCTCAGGAAAAACGGTGCTGCTGTGACCCGGGACCTC
GTCATGGCCAAGCTTCTCTCCGAGATGCCAACCTTTTCAGGGGGCATGCC
GTCCCAAGACGAGCCGGAGAAGATGGAAAAATTTCAGAAGCGTTTCAACG
CCTGGTACTACAGGTTCCTCAAGAGGCACCGGTTCTCGATCCGACGCAAG
ACGAGCGTGGGGCAGAAGAAGCCGGAAGGATGGGAGGGCAAGGCGTGGGC
ATTCATCCAGAAGCTTCGCTCAAGCCTGCGTGAGCACGCGCAGGAAGCCA
TCTTCGCCCTTCTGTACAACATGGACCAGACCCCGATCCAGGCTGAGATG
CCGCCGGACACCACGGTGGAGAAGACTGGTACGAAGAGCGCTTGCATCAC
GACAGGAGGTGAGACGGAGAAGCTGCGGTACACCGTGGTGCTAGCTGTCC
GGGGTGATGGACAGAAGGTGCGGCCGCGCATCATCTACAAGGGGAACCCT
TTTCGGACGAGCTTCGGCTACCCGGCTGGCGGCATCAGCCTCGGGGTGCA
GAAGTCGTCGTGGTGCGACGGCACCCAGTCCGACGAGTGGGTAACCCAGG
ACTTCATGCGCCGCCCAGGGTCTACCTCCAGAGATCAGCGTCCCAGCGTT
CTCGTGCTCGACGACTTCAGGTGCCACCGGGAAGAGAGGTTCCAAAAGAA
GCTAATGGACCTGGCCAAGACGCTGGTGGTGATGCTTGGTGGAGGGCTGA
CCCCGGTGTGCCAGCCGCTCGACCGGAACATCAACAAGGAGTTCAAGCGA
GGTGTTCGGGCCAGGTACACCAGCTGGATCCGGGACAACTACGGGCGCTC
GGGGCAGAAGGTGACCGCGCCGAGCAGGGGGCTGGTCGCGACGTGGGTAA
AGGAGGTGTGGGACAACATCTCGGAGCGGACCATCCGCTCGTGCTTCAAG
GTCTGCGGTCTCACCCTCAACCTCGACGGAAGCGAGGAC
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