mRNA_P-littoralis_Contig157.88.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig157.88.1
Unique NamemRNA_P-littoralis_Contig157.88.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig157.88.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig157contigP-littoralis_Contig157:439377..439972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size596
Hectar predicted targeting categorysignal peptide
Exons1
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789747.7506-CDS-P-littoralis_Contig157:439376..4397121680789747.7506-CDS-P-littoralis_Contig157:439376..439712Pylaiella littoralis U1_48CDSP-littoralis_Contig157 439377..439712 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789747.7633173-UTR-P-littoralis_Contig157:439712..4399721680789747.7633173-UTR-P-littoralis_Contig157:439712..439972Pylaiella littoralis U1_48UTRP-littoralis_Contig157 439713..439972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig157.88.1prot_P-littoralis_Contig157.88.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig157 439377..439712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig157.88.1

>prot_P-littoralis_Contig157.88.1 ID=prot_P-littoralis_Contig157.88.1|Name=mRNA_P-littoralis_Contig157.88.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
MIAVLIPGVLYILRTRKVFVAGLAGLGACFFFCCCCRLRSAVGGPIRGSC
SSSCVALAYGRAPWEQACNYEAHGQGYEKAVRCVVVSTGLHGGMSVKRCR
CWWSPVRVCGL*
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mRNA from alignment at P-littoralis_Contig157:439377..439972+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig157.88.1 ID=mRNA_P-littoralis_Contig157.88.1|Name=mRNA_P-littoralis_Contig157.88.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=596bp|location=Sequence derived from alignment at P-littoralis_Contig157:439377..439972+ (Pylaiella littoralis U1_48)
ATGATCGCGGTTTTGATACCGGGTGTCCTTTACATACTTCGTACCCGAAA
AGTTTTTGTTGCTGGCCTGGCTGGTCTCGGGGCGTGTTTTTTTTTTTGCT
GCTGCTGCAGGCTGCGGTCGGCGGTCGGCGGTCCAATTCGCGGCAGCTGC
TCCAGTAGTTGTGTTGCCCTCGCATATGGGCGGGCTCCGTGGGAGCAGGC
ATGCAACTATGAAGCTCACGGGCAAGGGTACGAGAAGGCGGTGAGGTGTG
TCGTCGTGTCAACGGGTTTGCACGGGGGCATGTCCGTTAAGCGCTGCCGC
TGTTGGTGGTCTCCCGTGCGTGTGTGTGGGTTGTGATGCCCGTTAATTCC
CCGCATTTTTCGAAGAATTTGTTTTTTTCTTGATAGAATGGTTTAGACAA
GATTCGTGCGTCATGCTTTTTGTTCCATCCGGAAATGGTGAATGGACTAT
TGTAGATTATCAGGGCGCGTTGTTTTGTGCAGCCTTTCTCGTGACGTTTG
TGTTCCTCTTTTTTCTATCTCAACACAAGCAGCTGATGCTGAACGCTTTG
GACGCGCACCGTCTTCCCCACGCTCACTCGTGGCTGAGAGTCGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig157:439377..439972+

>mRNA_P-littoralis_Contig157.88.1 ID=mRNA_P-littoralis_Contig157.88.1|Name=mRNA_P-littoralis_Contig157.88.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig157:439377..439972+ (Pylaiella littoralis U1_48)
ATGATCGCGGTTTTGATACCGGGTGTCCTTTACATACTTCGTACCCGAAA
AGTTTTTGTTGCTGGCCTGGCTGGTCTCGGGGCGTGTTTTTTTTTTTGCT
GCTGCTGCAGGCTGCGGTCGGCGGTCGGCGGTCCAATTCGCGGCAGCTGC
TCCAGTAGTTGTGTTGCCCTCGCATATGGGCGGGCTCCGTGGGAGCAGGC
ATGCAACTATGAAGCTCACGGGCAAGGGTACGAGAAGGCGGTGAGGTGTG
TCGTCGTGTCAACGGGTTTGCACGGGGGCATGTCCGTTAAGCGCTGCCGC
TGTTGGTGGTCTCCCGTGCGTGTGTGTGGGTTGTGA
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