mRNA_P-littoralis_Contig156.126.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.126.1
Unique NamemRNA_P-littoralis_Contig156.126.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig156.126.1 vs. uniprot
Match: Q8QN67_ESV1K (EsV-1-223 n=2 Tax=root TaxID=1 RepID=Q8QN67_ESV1K)

HSP 1 Score: 149 bits (377), Expect = 3.000e-44
Identity = 76/128 (59.38%), Postives = 96/128 (75.00%), Query Frame = 1
Query:    1 MSRRVAVACAIALGLKSLSASGASGAIVSFRL*VDRLLMGGILSNLIVVAVFEEIYWQVDRSTADSPDQEHFGFGSVLDAYYYFVVTSSSVGYGDILPRTRKAKMLTIAHIMSMFFIMLPIVLKALER 384
            MSRR+   C IA+ L+ L  SG    IVSFR  +D  L+GGILSNLI++ VF E+YWQ+D+      D  HFGF S +DAYY+  VTSSSVGYGD+LP+T KAK+LTIAHI++MFF+MLP+V KALE+
Sbjct:    1 MSRRLFATCGIAIALRGLVVSGGVKEIVSFRPLIDTSLVGGILSNLILLVVFAELYWQLDQGD----DHTHFGFSSAIDAYYFSAVTSSSVGYGDLLPKTPKAKLLTIAHILAMFFVMLPVVAKALEK 124          
BLAST of mRNA_P-littoralis_Contig156.126.1 vs. uniprot
Match: Q7T6V0_9PHYC (Potassium channel protein n=7 Tax=Chlorovirus TaxID=181083 RepID=Q7T6V0_9PHYC)

HSP 1 Score: 57.0 bits (136), Expect = 3.820e-8
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 1
Query:  133 NLIVVAVFEEIY------WQVDRSTADSPDQEHFGFGSVLDAYYYFVVTSSSVGYGDILPRTRKAKMLTIAHIMSMFFIMLPI 363
            +L+V+A+F  IY      ++ + S A+ PD++     S +D  Y+ V T S+VG+GDILP+T  AK+ TIAHI+ +FFI+L +
Sbjct:   17 HLVVLAMFVTIYRFFPGGFENNFSVAN-PDKK----ASWIDCLYFGVTTHSTVGFGDILPKTTGAKLCTIAHIVMVFFIVLTL 94          
BLAST of mRNA_P-littoralis_Contig156.126.1 vs. uniprot
Match: KCV_PBCV1 (Potassium channel protein kcv n=15 Tax=Chlorovirus TaxID=181083 RepID=KCV_PBCV1)

HSP 1 Score: 55.8 bits (133), Expect = 1.070e-7
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = 1
Query:  133 NLIVVAVFEEIY------WQVDRSTADSPDQEHFGFGSVLDAYYYFVVTSSSVGYGDILPRTRKAKMLTIAHIMSMFFIMLPI 363
            +L ++A+F  IY      ++ + S A+ PD++     S +D  Y+ V T S+VG+GDILP+T  AK+ TIAHI+++FFI+L +
Sbjct:   17 HLFILAMFVMIYKFFPGGFENNFSVAN-PDKK----ASWIDCIYFGVTTHSTVGFGDILPKTTGAKLCTIAHIVTVFFIVLTL 94          
BLAST of mRNA_P-littoralis_Contig156.126.1 vs. uniprot
Match: A0A1J0F9D0_9PHYC (Potassium ion channel protein n=1 Tax=Only Syngen Nebraska virus 5 TaxID=1917232 RepID=A0A1J0F9D0_9PHYC)

HSP 1 Score: 55.1 bits (131), Expect = 2.120e-7
Identity = 33/82 (40.24%), Postives = 51/82 (62.20%), Query Frame = 1
Query:  133 NLIVVAVFEEIYWQV-----DRSTADSPDQEHFGFGSVLDAYYYFVVTSSSVGYGDILPRTRKAKMLTIAHIMSMFFIMLPI 363
            +L+V+ +F  IY        +  T  +PD++     S +D  Y+ V T S+VG+GDILP+T  AK+ TIAHI+ +FFI+L +
Sbjct:   17 HLLVLMMFVMIYRFFPGGFENNFTVANPDKK----ASFVDCLYFGVTTHSTVGFGDILPKTTGAKLCTIAHIVVVFFIVLTL 94          
BLAST of mRNA_P-littoralis_Contig156.126.1 vs. uniprot
Match: A0A6C0F5P2_9ZZZZ (Ion_trans_2 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0F5P2_9ZZZZ)

HSP 1 Score: 54.3 bits (129), Expect = 4.620e-7
Identity = 29/81 (35.80%), Postives = 48/81 (59.26%), Query Frame = 1
Query:  124 ILSNLIVVAVFEEIYWQVDRSTADSPDQEHFGFGSVLDAYYYFVVTSSSVGYGDILPRTRKAKMLTIAHIMSMFFIMLPIV 366
            I+ N++++ +F  IY Q++         E FGF   +D +Y+ + T S+VGYGD +P+T +AK+  + H    F I+L IV
Sbjct:   12 IIINILLIVLFGIIYGQMN---------EDFGFTQTIDPFYFSLTTLSTVGYGDFMPKTTRAKIAVMFH---QFIILLQIV 80          
BLAST of mRNA_P-littoralis_Contig156.126.1 vs. uniprot
Match: A0A7C5AGX5_9BACT (Ion_trans_2 domain-containing protein n=2 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7C5AGX5_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 2.320e-6
Identity = 30/84 (35.71%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  100 VDRLLMGGILSNLIVVAVFEEIYWQVDRSTADSPDQEHFGFGSVLDAYYYFVVTSSSVGYGDILPRTRKAKMLTIAHIMSMFFI 351
            +++ L+  +++  + +AV   ++W  +R+   SP   H G     DA +++VVTSS+VGYGDI+PRT   +++ +A I++ FFI
Sbjct:    1 MNKRLLIPLIAIAVSLAVNGWLFWHFERNA--SPP--HPGLTKPFDAVWWWVVTSSTVGYGDIVPRTTAGRLVGVATILAGFFI 80          
BLAST of mRNA_P-littoralis_Contig156.126.1 vs. uniprot
Match: A0A7T3FXG0_9EURY (Ion transporter n=1 Tax=Halosimplex litoreum TaxID=1198301 RepID=A0A7T3FXG0_9EURY)

HSP 1 Score: 53.1 bits (126), Expect = 1.190e-5
Identity = 27/72 (37.50%), Postives = 47/72 (65.28%), Query Frame = 1
Query:  124 ILSNLIVVAVFEEIYWQVDRSTADSPDQEHFGFGSVLDAYYYFVVTSSSVGYGDILPRTRKAKMLTIAHIMS 339
            +L+ L+V+ V   +++ V+     +P+ EHFG     DA+YY VVT S+VG+GDI+P TR  + +T+  +++
Sbjct:  159 LLTVLVVLFVSAGLFYTVEHRA--NPNVEHFG-----DAFYYVVVTLSTVGFGDIVPVTRAGRWVTVTSVLA 223          
BLAST of mRNA_P-littoralis_Contig156.126.1 vs. uniprot
Match: M4QZP6_9PHYC (Ion_trans_2 domain-containing protein n=1 Tax=Micromonas pusilla virus 12T TaxID=755272 RepID=M4QZP6_9PHYC)

HSP 1 Score: 50.1 bits (118), Expect = 1.260e-5
Identity = 27/68 (39.71%), Postives = 38/68 (55.88%), Query Frame = 1
Query:  127 LSNLIVVAVFEEIYWQVDRSTADSPDQEHFGFGSVLDAYYYFVVTSSSVGYGDILPRTRKAKMLTIAH 330
            + NLI+++    I +        S +  HF F SVLD +Y+   T SSVGYGDI P+T  AK+L +  
Sbjct:    1 MRNLIIISTLFGIIYS-------SLEPGHFQFKSVLDPFYFSFTTMSSVGYGDITPKTNLAKVLVMCQ 61          
BLAST of mRNA_P-littoralis_Contig156.126.1 vs. uniprot
Match: UPI000A2A894F (potassium voltage-gated channel protein Shal n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A894F)

HSP 1 Score: 51.6 bits (122), Expect = 5.260e-5
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 1
Query:  115 MGGIL-SNLIVVAVFEEIYWQVDRSTADSPDQEHFGFGSVLDAYYYFVVTSSSVGYGDILPRTRKAKML 318
            +GGIL S L ++ VF  I + V+   AD+PD    GF S+  A++Y +VT +++GYGD+ P T   K++
Sbjct:  312 LGGILFSFLALMVVFSSIIYFVEDGGADNPD----GFTSIPSAFWYTLVTMTTLGYGDMYPTTTVGKLI 376          
BLAST of mRNA_P-littoralis_Contig156.126.1 vs. uniprot
Match: A0A7D5PC80_9EURY (Potassium channel family protein n=2 Tax=Halosimplex TaxID=171163 RepID=A0A7D5PC80_9EURY)

HSP 1 Score: 50.8 bits (120), Expect = 7.860e-5
Identity = 26/72 (36.11%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  124 ILSNLIVVAVFEEIYWQVDRSTADSPDQEHFGFGSVLDAYYYFVVTSSSVGYGDILPRTRKAKMLTIAHIMS 339
            +L+ L+V+ V   +++  +  T  +P  EHFG     DA+YY V+T S+VG+GDI+P TR  + +T+  +++
Sbjct:  159 LLTVLVVLFVSAGLFYAAE--TRANPGVEHFG-----DAFYYVVITLSTVGFGDIVPVTRPGRWVTVISVLA 223          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
Q8QN67_ESV1K3.000e-4459.38EsV-1-223 n=2 Tax=root TaxID=1 RepID=Q8QN67_ESV1K[more]
Q7T6V0_9PHYC3.820e-842.17Potassium channel protein n=7 Tax=Chlorovirus TaxI... [more]
KCV_PBCV11.070e-740.96Potassium channel protein kcv n=15 Tax=Chlorovirus... [more]
A0A1J0F9D0_9PHYC2.120e-740.24Potassium ion channel protein n=1 Tax=Only Syngen ... [more]
A0A6C0F5P2_9ZZZZ4.620e-735.80Ion_trans_2 domain-containing protein n=1 Tax=vira... [more]
A0A7C5AGX5_9BACT2.320e-635.71Ion_trans_2 domain-containing protein n=2 Tax=Lent... [more]
A0A7T3FXG0_9EURY1.190e-537.50Ion transporter n=1 Tax=Halosimplex litoreum TaxID... [more]
M4QZP6_9PHYC1.260e-539.71Ion_trans_2 domain-containing protein n=1 Tax=Micr... [more]
UPI000A2A894F5.260e-540.58potassium voltage-gated channel protein Shal n=1 T... [more]
A0A7D5PC80_9EURY7.860e-536.11Potassium channel family protein n=2 Tax=Halosimpl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:373502..373888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog864702.OsccyDRAFT_2843
PFAMsIon_trans
Model size387
Max annot lvl1117|Cyanobacteria
KEGG koko:K10716
KEGG TC1.A.1.1,1.A.1.13,1.A.1.17,1.A.1.24,1.A.1.25,1.A.1.6
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.35e-06
EggNOG OGsCOG0569@1|root,COG0569@2|Bacteria,1GR3U@1117|Cyanobacteria
Ec32 ortholog descriptionEsV-1-223 potassium channel
Ec32 orthologEc-06_006740.1
DescriptionIon transport protein
Cds size273
COG categoryU
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789746.6470363-CDS-P-littoralis_Contig156:373501..3737741680789746.6470363-CDS-P-littoralis_Contig156:373501..373774Pylaiella littoralis U1_48CDSP-littoralis_Contig156 373502..373774 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789746.661678-UTR-P-littoralis_Contig156:373774..3738881680789746.661678-UTR-P-littoralis_Contig156:373774..373888Pylaiella littoralis U1_48UTRP-littoralis_Contig156 373775..373888 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.126.1prot_P-littoralis_Contig156.126.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 373502..373774 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.126.1

>prot_P-littoralis_Contig156.126.1 ID=prot_P-littoralis_Contig156.126.1|Name=mRNA_P-littoralis_Contig156.126.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=91bp
MGGILSNLIVVAVFEEIYWQVDRSTADSPDQEHFGFGSVLDAYYYFVVTS
SSVGYGDILPRTRKAKMLTIAHIMSMFFIMLPIVLKALER*
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mRNA from alignment at P-littoralis_Contig156:373502..373888-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.126.1 ID=mRNA_P-littoralis_Contig156.126.1|Name=mRNA_P-littoralis_Contig156.126.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=387bp|location=Sequence derived from alignment at P-littoralis_Contig156:373502..373888- (Pylaiella littoralis U1_48)
ATGTCACGACGCGTCGCAGTGGCCTGTGCCATCGCGCTGGGTCTGAAATC TCTGTCGGCGAGCGGTGCCTCCGGCGCGATTGTTTCCTTCCGTCTGTGAG TTGACAGGTTGCTGATGGGAGGTATCCTGTCCAATCTCATTGTCGTCGCC GTTTTTGAAGAAATTTACTGGCAGGTTGACAGGAGCACAGCGGACTCGCC GGACCAAGAGCACTTTGGCTTTGGGTCGGTTCTCGATGCTTATTATTATT TCGTGGTTACTTCTTCGAGCGTGGGCTATGGCGACATCCTACCGCGAACC CGCAAGGCGAAAATGTTGACGATAGCCCACATCATGTCCATGTTTTTCAT CATGTTACCTATAGTACTCAAGGCACTTGAGCGCTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig156:373502..373888-

>mRNA_P-littoralis_Contig156.126.1 ID=mRNA_P-littoralis_Contig156.126.1|Name=mRNA_P-littoralis_Contig156.126.1|organism=Pylaiella littoralis U1_48|type=CDS|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig156:373502..373888- (Pylaiella littoralis U1_48)
ATGGGAGGTATCCTGTCCAATCTCATTGTCGTCGCCGTTTTTGAAGAAAT
TTACTGGCAGGTTGACAGGAGCACAGCGGACTCGCCGGACCAAGAGCACT
TTGGCTTTGGGTCGGTTCTCGATGCTTATTATTATTTCGTGGTTACTTCT
TCGAGCGTGGGCTATGGCGACATCCTACCGCGAACCCGCAAGGCGAAAAT
GTTGACGATAGCCCACATCATGTCCATGTTTTTCATCATGTTACCTATAG
TACTCAAGGCACTTGAGCGCTAG
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