mRNA_P-littoralis_Contig156.103.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.103.1
Unique NamemRNA_P-littoralis_Contig156.103.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig156.103.1 vs. uniprot
Match: A0A6H5JNX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX1_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 3.650e-41
Identity = 78/173 (45.09%), Postives = 107/173 (61.85%), Query Frame = 2 
Query:  401 MASKNIFAATTTPSKRSASDIKREVVGNCIVPACNGADVTRHSPTFGGCSNFEKSGCKFKISILTAPSVCITCHGSINPGVKCLGVPHPTAERGPTGRVVYINNHLEWDQCLGARIAV--RGKDVCKFVEPTEEGDERVEKPCERCSEFIAVGDFIISAWRSVTTPLLPRATP 913
            MAS+NIFAAT   SKR  +    EV+G C    C+ A+VTR S TFGGC N+  SGC++KISIL+A + C+TC   +NPGV CLGVP+    +   G+  Y+N HL W+ CLG ++ +   GK   KF+E  ++ D R+  PC RC++ I  GDF+IS ++      LP   P
Sbjct:    1 MASRNIFAATPPSSKRKTA----EVLGKCA--RCDNAEVTRCSATFGGCENYNSSGCRYKISILSAAARCVTCLADVNPGVLCLGVPNLKGTKNTRGKTAYVNTHLRWEDCLGQKVKLGKEGKSAFKFIERVDQEDSRIGVPCARCTDEIVEGDFVISTYQPDAENPLPANNP 167
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JNX1_9PHAE3.650e-4145.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:320399..324922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2053
Hectar predicted targeting categoryother localisation
Exons5
Cds size846
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.103.1prot_P-littoralis_Contig156.103.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 321206..324491 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789746.3126988-UTR-P-littoralis_Contig156:320398..3212051680789746.3126988-UTR-P-littoralis_Contig156:320398..321205Pylaiella littoralis U1_48UTRP-littoralis_Contig156 320399..321205 -
1680789746.362299-UTR-P-littoralis_Contig156:324491..3247281680789746.362299-UTR-P-littoralis_Contig156:324491..324728Pylaiella littoralis U1_48UTRP-littoralis_Contig156 324492..324728 -
1680789746.3746161-UTR-P-littoralis_Contig156:324759..3249221680789746.3746161-UTR-P-littoralis_Contig156:324759..324922Pylaiella littoralis U1_48UTRP-littoralis_Contig156 324760..324922 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789746.3234491-CDS-P-littoralis_Contig156:321205..3214121680789746.3234491-CDS-P-littoralis_Contig156:321205..321412Pylaiella littoralis U1_48CDSP-littoralis_Contig156 321206..321412 -
1680789746.3320196-CDS-P-littoralis_Contig156:323198..3234231680789746.3320196-CDS-P-littoralis_Contig156:323198..323423Pylaiella littoralis U1_48CDSP-littoralis_Contig156 323199..323423 -
1680789746.340751-CDS-P-littoralis_Contig156:323785..3239011680789746.340751-CDS-P-littoralis_Contig156:323785..323901Pylaiella littoralis U1_48CDSP-littoralis_Contig156 323786..323901 -
1680789746.3528473-CDS-P-littoralis_Contig156:324193..3244911680789746.3528473-CDS-P-littoralis_Contig156:324193..324491Pylaiella littoralis U1_48CDSP-littoralis_Contig156 324194..324491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.103.1

>prot_P-littoralis_Contig156.103.1 ID=prot_P-littoralis_Contig156.103.1|Name=mRNA_P-littoralis_Contig156.103.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=282bp
MASKNIFAATTTPSKRSASDIKREVVGNCIVPACNGADVTRHSPTFGGCS
NFEKSGCKFKISILTAPSVCITCHGSINPGVKCLGVPHPTAERGPTGRVV
YINNHLEWDQCLGARIAVRGKDVCKFVEPTEEGDERVEKPCERCSEFIAV
GDFIISAWRSVTTPLLPRATPFTPSSAPGRCLTTTSTNLLTPCSSRGSRT
KQSTPPPSTSTFEIHPSHRNPFYPRPRSRVIPTRTRTVAGSRPRGLHSRF
IVVSRRVRRVPTLSASILFGGRVFLARRFPC*
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mRNA from alignment at P-littoralis_Contig156:320399..324922-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.103.1 ID=mRNA_P-littoralis_Contig156.103.1|Name=mRNA_P-littoralis_Contig156.103.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4524bp|location=Sequence derived from alignment at P-littoralis_Contig156:320399..324922- (Pylaiella littoralis U1_48)
GTGGTGGTCACAACCGATCTCAACTCTGTCCCGATACATGATATACAGAC
CACGGCGGGATACTGCTGTAGTACGGGATTGCGAAATGATGACATCATTT
CGCTACTCAGAGATATATTCCGCACGACCACGTTGCGGATGATTTATCAT
GGAACCCAAAACAGCAGGATGATTTATCATGGAACCCAAAACAGCAGTCA
TATCTCCTCGTCAGACTAGGATTTGCTGACATTGGATCATGTATCCGCCC
CTCTATATCTTTAAAGATTTCCTGTGCTAACGATCACATTGCGGATGATT
TATCATAGACCAGCAGCGTTAACAAGTAACCCTCTCCAGTAGTAGGAGCC
AGGAATCTACCCCTACTGTCGAAGGTCGGAGGTCTTTGGGGCGCCTCCCC
CCACCCCTTCACACCAACACACCCCGCTCAAATGGCGTCAAAGAATATCT
TCGCCGCAACTACCACTCCGTCGAAGCGCTCCGCCAGCGACATCAAGCGG
GAGGTAGTCGGCAACTGCATTGTGCCAGCGTGCAACGGCGCGGACGTCAC
TCGCCATTCGCCCACTTTTGGAGGCTGCTCAAACTTCGAGAAGTCAGGCT
GCAAGTTTAAGATATCCATCCTCACAGCCCCATCCGTGTGCATCACCTGC
CACGGCTCCATTAACCCGGGCGTCAAGTGCCTTGGTGTCCCTCATCCCAC
GGCCGAGCGTGGACCGACGGGACGAGTGGGTTGAGTCTGGCATGTGCAGG
AGCGTGTGTGTGCCTACTTCCTGTTGGCCGTACTACGAAACAAAGACCGA
GGATATCTCTCTACACTTTCGCCCTGCGGCAGACTCGCAGAAGTTGCATG
ACGTGTAAAGAAGCGAAGTAGAATTTAGTCGCGCGTGAGCCATGTCTACC
GCTGTACCTCCTTCTACCCACACCCAACGGGCGGCGCCTGATCGCACACC
GGTCCCGCCAAAATTCGCGTTCGTTGTCAAACCCCGTAACAAGCCCCTCT
TATTTTCTCCTCTTCTCGCAGTGTACATCAACAACCACCTCGAGTGGGAT
CAGTGCCTCGGCGCGCGCATCGCCGTTAGGGGCAAGGACGTCTGCAAGTT
CGTGGAGCCCACCGAAGAAGGCGACGAAAGGGTCGAGGTACGTACGTATT
CCACAGAACATGAAAAAAGAAATTTCGGAATGTGTGAAGGTTGCCAAGAC
TACGAGTCTACATACATATCCGTAAAAAATATGCGTCATCCCCGTCGAGG
TACGTATTCCTACAGAACATGATATACTCTGAGTATTTTTTTTCGGAGTG
TGAAGTTGCCAAGACTACGAGTCTTCATACAAATCCGTATAAAATATGCT
TCATCCCCACAGATATGTTGATTGATGTTAAAATATCACTCATGGCGCAA
AATTTCAAATATTTTCATCACCCCCATGCACGCTACGTTGCTTTCCGTAC
GAACTAAATTTACGCCGCTGCTCATCTTGCCCCCTCCCTTTTCGGTCAGA
AACCCTGCGAGCGCTGCAGCGAGTTCATCGCCGTCGGCGACTTCATCATC
AGCGCGTGGCGGTCGGTAACAACCCCACTCCTCCCGCGAGCAACCCCCTT
CACGCCAAGCTCTGCGCCAGGGCGGTGTTTGACGACAACGTCAACCAATT
TGTTGACTCCATGCTCTTCGAGGGGGTCCCGGACAAAGCAGTCGACGCCG
CCACCCTCGACTTCGACTTTTGAGGTGAGGCCTCTCACCTTTTACAATTT
TTAACAAGGACCACGTTTGACTGGCCTTCCTTTTCATGCCCATTTCGGCC
TCAAAGCCACAAGGTTTTATGAGCCCATTTCGGCCTCAAAGCCACAAAGG
TATTATATCCTTCGAAAACCTCGAGACACAAGTAAAAGCTATCCGAAAAC
ATGCCAAGGCCCACGACGGTAGGGTTAACGCCGCAGATGCTAAAATCATG
CGCATGTACCACACACCCAAGGCCATGCGACGTCGGAGTAGGGCACGTAT
TCATTCCGAGGAAAGCGTATTTGAGTCCATTAGTTTGCTTGCCACCCAGG
GCCCTTTACCGGGTATGCTATCAACTGCCATGCGTCGTCACACGAGTCTC
AGGGAAGCCTCAGCCCTTATGCGTTCGGAGAGCAACGTACCCCGTCTTTC
AGGTTTTCTGTCTGCGGCGTTATTTGAGTCCATTAGTTCGCTTGCCACCC
AGGGCCCTTTACCGGATATGCTATCGCCTGCCATGCGTCGTCACACGAGT
CTCAGGGAAGCTTCAGCCCTTCTGCGTTCGGAGAGCAACGTACCCCGTCT
TTCAGGTTTCCTGTCTGCGGCGTTACTTGAGTCCATTAGTTCGCTTGCCA
CCCAGAGCCCTTTACCGGATATGCTATCGCCTGCCATGCGTCGTCACACG
AGTCTCAGGGAAGCTTCAGCCCTTCTGCGTTCGGAGAGCAACGTATCCCG
TTTGTCAGGTTTTCTGTCTGCGGCGTTATTTGAGTCCATTAGTTCGCTTG
CCACCCAGGGTCCTTTACCGGGTATGCTATCAACTGCCATGCGTCGTCAC
ACGAGTCTCAGGGAAGCTTCAGCCCTTCTGCGTTCGGAGAGCAACGTACC
CCGTTTTTCAGGTTTCCTGTCTGCGGCGTTATTTGAGTCCATTAGTTCGC
TTGCCACCCAGGGCCCTTTACCGGATATGCTATCGACTGCCATGCGTCGT
CACACGAGTATCAGGAGTTGGTCCATTTCGTCTACCCTGATATTCTCCAC
GCTGACCCCACCGCCTTTGCTTCTCGGGCTATCCTTTCCTCTACAAATGC
CTCCATCGACACTATCAACGCCCACGTCCTTAACATTCTGCCGGGAAACC
TTCTCACTGCTTACAGCTGTGATTCCGTCGATCCACATGCGTCTGGCAAT
AGTATAATCGACTTCGTGCACGAATCTGACCTCAACGCCATCGACGTCGC
AGGGGTACCACCTCACGCTTTACAACTAAAGCTTAACTCCATGGTCATGA
TTACTCGCAACCTCAATTTCAAGCAGGGTCTCGTCAACGGTCAAAAGACT
ATTGTTCGTGCCTTTTCTACCCGTGTTGTGCATGTTCAGCTACTAGATAC
GGCTTCCACGCTCGTCCTTATCCCTCGCATTAGGTTCCGGTCCAAGGTCG
GTCGAAATGGTATCACATTTTCCCGGTTACAGCTTCCGCTTCGCGTGTGC
TATGCCCTTACCATCAACAAAAGTCAAGGACAAACTCTTTCCAAAAATGG
CCTTGATCTCCGCAACGATGTCTTTACGCATGGTCAGCTGCACGTGGCAC
TCAGTCGTGCACAGAAGCGCTCGTCGCTCATGTGCCTCACGTCACCCTCA
CGGTTGCGTGGCGCTGTCAACCGGGCTGCTTTTGTCGCCAACATAACCTT
TCCTGCTTTTGTAGCTGCTGCCGCCGAATCCCTCGTTACGTCACCCGCCC
TACCGCCTGCGTATATTGATTTCCTCGGATGCATCCCCTCCCTCCAACCC
CCCCATCCAGATCCATCCCAGCCACCGGAACCCGTTCTACCCGCGGCCGC
GGAGCCGCGTCATCCCAACCAGGACACGGACGGTGGCTGGTTCGAGGCCA
AGGGGTCTTCATAGTCGTTTCATAGTCGTTTCGCGACGGGTCCGTCGCGT
TCCCACCCTTTCGGCTTCCATACTTTTCGGCGGTCGGGTTTTTCTCGCGC
GTAGGTTTCCGTGTTAGAGGGTTGTGTTTCCTGACTGGTGCGTGGCATGT
TCTTAGTTTGCTTCGCTTTCGTCTGTGTGGTTTCGCGACGTTTTTATTTC
TTACCTTGGGTTTGGTTATCACGTATTTTCTGATCTATTCGGGGTTCGGG
CGTGCCACCGCGGGAATGTCGTGACCCTTCCCCTTCGGGGCTGTTTTCCC
TCTCTCGGGCGTAAGTCTTGCTTCGATTTGCCTTTCTCGGGCAAACTTTC
TTGCAATAGGGCATGAGTAATGCATGCACGCGTGTCGTTCCTGGCCTTAC
CTGCTGTTTTCGGTTATGCGGTTCGTCGGTGGTTCCCGTACGCGGGGCAC
ACGTCGTACATAAACTATTATGCCACCTGGGTTCTGCCTGGGTTCTGCTT
TTCATTTATGGCAGCACGATCTTTCCTGCTGCAAATCATACATCGAGGTT
GGTGAGGTCGGCCTTTTCTTCTGACACACGTGTGTGTCCATCCCATCGCC
GCCGTTTCGGGCTTTCCTGCCATGGTCCGTGGAAATTGGCTTTTTGACAC
ATACGTGCCAATCTGGGAATAGCCTTTTTGACACATACGTGCCAATCTGG
GAATAGCCTTTTTGACACATTCGTGCCTACCAATCTGTACACCTACGATA
CGCACCGCTACTCTCCATACATGCACACCATGTACTTCGACATGAGTTCT
CCGTATTCTACGCCTGTATTTGTCAGCCCCTCGTCGGCATTATCACCAGG
CCATGTCCCACCATCACGCCTTCCGCGTGCCTCTATATCTTGGATTCGGT
CAGGACCGTGGCGGCGTCAGCCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig156:320399..324922-

>mRNA_P-littoralis_Contig156.103.1 ID=mRNA_P-littoralis_Contig156.103.1|Name=mRNA_P-littoralis_Contig156.103.1|organism=Pylaiella littoralis U1_48|type=CDS|length=846bp|location=Sequence derived from alignment at P-littoralis_Contig156:320399..324922- (Pylaiella littoralis U1_48)
ATGGCGTCAAAGAATATCTTCGCCGCAACTACCACTCCGTCGAAGCGCTC
CGCCAGCGACATCAAGCGGGAGGTAGTCGGCAACTGCATTGTGCCAGCGT
GCAACGGCGCGGACGTCACTCGCCATTCGCCCACTTTTGGAGGCTGCTCA
AACTTCGAGAAGTCAGGCTGCAAGTTTAAGATATCCATCCTCACAGCCCC
ATCCGTGTGCATCACCTGCCACGGCTCCATTAACCCGGGCGTCAAGTGCC
TTGGTGTCCCTCATCCCACGGCCGAGCGTGGACCGACGGGACGAGTGGTG
TACATCAACAACCACCTCGAGTGGGATCAGTGCCTCGGCGCGCGCATCGC
CGTTAGGGGCAAGGACGTCTGCAAGTTCGTGGAGCCCACCGAAGAAGGCG
ACGAAAGGGTCGAGAAACCCTGCGAGCGCTGCAGCGAGTTCATCGCCGTC
GGCGACTTCATCATCAGCGCGTGGCGGTCGGTAACAACCCCACTCCTCCC
GCGAGCAACCCCCTTCACGCCAAGCTCTGCGCCAGGGCGGTGTTTGACGA
CAACGTCAACCAATTTGTTGACTCCATGCTCTTCGAGGGGGTCCCGGACA
AAGCAGTCGACGCCGCCACCCTCGACTTCGACTTTTGAGATCCATCCCAG
CCACCGGAACCCGTTCTACCCGCGGCCGCGGAGCCGCGTCATCCCAACCA
GGACACGGACGGTGGCTGGTTCGAGGCCAAGGGGTCTTCATAGTCGTTTC
ATAGTCGTTTCGCGACGGGTCCGTCGCGTTCCCACCCTTTCGGCTTCCAT
ACTTTTCGGCGGTCGGGTTTTTCTCGCGCGTAGGTTTCCGTGTTAG
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