mRNA_P-littoralis_Contig156.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.22.1
Unique NamemRNA_P-littoralis_Contig156.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig156.22.1 vs. uniprot
Match: D7G4Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z8_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.940e-20
Identity = 52/99 (52.53%), Postives = 67/99 (67.68%), Query Frame = 2 
Query:   77 MSALSKRSPLKRKQQ-GSNTAAKSRALFSAGNSDWPCLDFKDCPDGRLKVCLRKKDKKEYVTCDQNVWSDKDMCKVTLSMLLASKDHPHGYQLCLCDIG 370
            M+ LSK SPLKRKQQ  S    K RAL + G   WPC D  +  DG LKV ++KK+  +++TCDQN+W D+  CKV+LS+L  S+DHPH   LCL D+G
Sbjct:  624 MNTLSKASPLKRKQQQASAPIVKPRALLTLGVEGWPCPDD-NSTDGLLKV-VKKKNGGDFLTCDQNIWKDETSCKVSLSLLKPSQDHPHECSLCLKDVG 720
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4Z8_ECTSI1.940e-2052.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:106111..108021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G4Z8
PFAMsDimer_Tnp_hAT
Model size371
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.02e-22
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789744.5168808-CDS-P-littoralis_Contig156:106110..1061821680789744.5168808-CDS-P-littoralis_Contig156:106110..106182Pylaiella littoralis U1_48CDSP-littoralis_Contig156 106111..106182 -
1680789744.5285153-CDS-P-littoralis_Contig156:107723..1079451680789744.5285153-CDS-P-littoralis_Contig156:107723..107945Pylaiella littoralis U1_48CDSP-littoralis_Contig156 107724..107945 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789744.5389056-UTR-P-littoralis_Contig156:107945..1080211680789744.5389056-UTR-P-littoralis_Contig156:107945..108021Pylaiella littoralis U1_48UTRP-littoralis_Contig156 107946..108021 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.22.1prot_P-littoralis_Contig156.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 106111..107945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.22.1

>prot_P-littoralis_Contig156.22.1 ID=prot_P-littoralis_Contig156.22.1|Name=mRNA_P-littoralis_Contig156.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=98bp
MSALSKRSPLKRKQQGSNTAAKSRALFSAGNSDWPCLDFKDCPDGRLKVC
LRKKDKKEYVTCDQNVWSDKDMCKVTLSMLLASKDHPHGYQLCLCDIG
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mRNA from alignment at P-littoralis_Contig156:106111..108021-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.22.1 ID=mRNA_P-littoralis_Contig156.22.1|Name=mRNA_P-littoralis_Contig156.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1911bp|location=Sequence derived from alignment at P-littoralis_Contig156:106111..108021- (Pylaiella littoralis U1_48)
GGCGGTAGTGAGCTAATGTGAGAATCAACAACAAACAACACCCATTACAT
AGAGCACCAAACACCTTATAAGCAGAATGAGCGCGTTGTCAAAGCGTTCA
CCACTGAAGCGCAAGCAACAAGGTAGCAACACGGCAGCCAAGTCTAGGGC
TCTCTTCTCGGCTGGCAACTCAGACTGGCCCTGTCTGGATTTCAAGGACT
GCCCTGACGGGCGTCTGAAGGTCTGCCTTCGTAAGAAGGATAAAAAAGAG
TACGTTACCTGCGACCAAAACGTGTGGAGCGACAAGGACATGTGCAAGGT
ATGACTACGGTTGTGTTGGAAACGTCATCTGTGATTACCTTTTGCCCTCA
TTATCGTGATTGTGCTCTTCGATCACCCTCACGAATTTTGTGGTGTTTGC
ATCCGTGTCCTGTGTGTGCTGCTGTGTTTTATTTTGCAGTCTCCCCGAGC
ACCACCGCCACCAGCACCTTTCCCATGAATATGTTGCTCGTTTGTTTCAG
TGCTGCAGACCGTGTGTTGCCGGTAACAATGTGTCCGTGGATTGCACGTG
CTTTACCGCATGTGTGTTAGGCCCTTTTTAATCAGGAGGCCTGATTTCGC
CGAACGGCGAAATCATTTCCCCGAAAGGTGGAGAGAAATTTGCTCCGTTC
TAATCGGAGAGGTCATGGTGCTTTTCTGCTATAAAATCAGACAAAGATCA
CTACACAACAGCAGACAGCAACAGAGACCGACGACCTCCCAAGTCCTCAT
TCTTTCGGAACGTAGGTCTACATGATATTGACCCTCGGTATTGTTGCCGC
TGCGTGGTTGTGGTAGCTCGTGTGAGGCTCACCAAGGGACGCAAGAAGAT
GGTGTGTGCTGCTAGACGCTTCCAAATCGCGCTGGTGGTGTTTTTTGGTT
GCAGTCACAAGCTTCACTTGACGGCATCAGATAGCATCAGAGCTACAAGG
CCTCCGAACTCCTGATTCTTTTGAAACGGGCGTCTACATGATAGTGGCCC
TCGACCACGCTGGTGCTACGCGGTCGTCGCAGCTTGATTGCTGGCTTCAA
TGGGGTTGCCAGCAGGGTGTGTGTTGGCGGAGCAAGAAAAAGAGGCAGAC
AAGCGGCGAAATCAAGGATTCCGGTTCCTTCTCGTCGCTTCTGCTCTAAT
TTTGTTCACCAACCTCTCACCGCGCCTGCCGGAATGTGAACATCAGGGGT
GGGTTTGCTCGCCAGAGTGATTGTCTCGGGTAGCCTGCTCTTTATTTTGC
TATCTGCACTGCTGTTGCTGCTGTAGGGCGAGTTTGGTGTGTGTTATATA
CGTTTCTGGAAATCGTTGGAAAAATTCACCTTTCGGCGAAATCGAATATC
CGCCGTTTTTTTGCTGTCGCTCAATTTCACCTTTCGGGGGAAGAAAGCCT
TCATATTGTCGACCATTTCGCCGATCGGTGAAAAAAAAAGCCGTTCGGCC
AATTCAGGCCTCCTGATTAAAAAGGGCCTTAGACTAATATTGTGAGCACA
CTTTTTTTTCATGCCTTGCACAATTTTTCAAGGTCGCGCTGTACCGCCAC
CAGCACATTTCCCATGAATCTATTGCTTTTTTCTCATGCCTCGCACATTT
TTCAAGGTCACGCTGTACCGCCACCAGCACCTTTCCCATGAATCTGTTGC
TCGTTTGTTGTGCTGCAGATCGTGTGTTGCCGGTAACAATGAGGTGTCCG
TCGATTGCATGCGCTTTCTGTGACCGACCGTGCCTCTTTCATGACCCTCA
CGGATGATGTGATTTTTGCATCTGTTCCTCCCTCTTTCAACATTTTCAGC
ACTTCGCTTTTTTTTTTGTCATGCCTCGCACATTTCAAGGTCACGCTGTC
CATGCTGCTCGCCAGCAAGGATCACCCGCACGGCTACCAGCTGTGCCTGT
GTGACATCGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig156:106111..108021-

>mRNA_P-littoralis_Contig156.22.1 ID=mRNA_P-littoralis_Contig156.22.1|Name=mRNA_P-littoralis_Contig156.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig156:106111..108021- (Pylaiella littoralis U1_48)
ATGAGCGCGTTGTCAAAGCGTTCACCACTGAAGCGCAAGCAACAAGGTAG
CAACACGGCAGCCAAGTCTAGGGCTCTCTTCTCGGCTGGCAACTCAGACT
GGCCCTGTCTGGATTTCAAGGACTGCCCTGACGGGCGTCTGAAGGTCTGC
CTTCGTAAGAAGGATAAAAAAGAGTACGTTACCTGCGACCAAAACGTGTG
GAGCGACAAGGACATGTGCAAGGTCACGCTGTCCATGCTGCTCGCCAGCA
AGGATCACCCGCACGGCTACCAGCTGTGCCTGTGTGACATCGGG
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