mRNA_P-littoralis_Contig156.137.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.137.1
Unique NamemRNA_P-littoralis_Contig156.137.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:398469..398963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size495
Hectar predicted targeting categorymitochondrion
Exons1
Cds size477
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789743.475813-UTR-P-littoralis_Contig156:398468..3984861680789743.475813-UTR-P-littoralis_Contig156:398468..398486Pylaiella littoralis U1_48UTRP-littoralis_Contig156 398469..398486 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789743.5333958-CDS-P-littoralis_Contig156:398486..3989631680789743.5333958-CDS-P-littoralis_Contig156:398486..398963Pylaiella littoralis U1_48CDSP-littoralis_Contig156 398487..398963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.137.1prot_P-littoralis_Contig156.137.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 398487..398963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.137.1

>prot_P-littoralis_Contig156.137.1 ID=prot_P-littoralis_Contig156.137.1|Name=mRNA_P-littoralis_Contig156.137.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=159bp
MLGSYSVLQKGTLLCMKSFSARHRSTWTPTRAHPLSRRSRAWRRIREMPL
ATSMGTPPTSCTPNLRLARQQNVWGTSSSPGKKVGLRRSFRGKTSQMRKV
VLPCPAKASTASSPKSGGLLVCPLWHPGSGCSTRRTSSTDAPSLKHRKTM
VERSRSTS*
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mRNA from alignment at P-littoralis_Contig156:398469..398963+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.137.1 ID=mRNA_P-littoralis_Contig156.137.1|Name=mRNA_P-littoralis_Contig156.137.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=495bp|location=Sequence derived from alignment at P-littoralis_Contig156:398469..398963+ (Pylaiella littoralis U1_48)
AGATGGGCACGCCAAAATATGCTTGGAAGCTATTCAGTCTTGCAGAAAGG
GACCCTCTTGTGCATGAAGAGTTTTTCCGCAAGGCACAGGAGTACATGGA
CTCCAACCCGGGCACATCCGCTATCCAGGCGTTCGAGAGCGTGGAGACGT
ATCAGAGAAATGCCTTTGGCGACGTCGATGGGAACACCGCCTACATCATG
TACGCCAAACCTCAGGTTGGCAAGACAACAGAATGTCTGGGGCACCTCCT
CAAGTCCTGGGAAAAAAGTGGGCTTGCGCCGGTCCTTTCGAGGCAAAACT
TCTCAGATGAGAAAGGTCGTTTTGCCCTGTCCTGCGAAGGCTTCAACCGC
TTCATCGCCAAAATCTGGAGGTTTGCTGGTGTGCCCGCTTTGGCACCCAG
GATCAGGTTGTTCGACTCGTAGGACAAGTTCTACAGACGCTCCCTCATTG
AAGCATAGAAAAACAATGGTGGAGAGGTCCCGTTCCACATCATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig156:398469..398963+

>mRNA_P-littoralis_Contig156.137.1 ID=mRNA_P-littoralis_Contig156.137.1|Name=mRNA_P-littoralis_Contig156.137.1|organism=Pylaiella littoralis U1_48|type=CDS|length=477bp|location=Sequence derived from alignment at P-littoralis_Contig156:398469..398963+ (Pylaiella littoralis U1_48)
ATGCTTGGAAGCTATTCAGTCTTGCAGAAAGGGACCCTCTTGTGCATGAA
GAGTTTTTCCGCAAGGCACAGGAGTACATGGACTCCAACCCGGGCACATC
CGCTATCCAGGCGTTCGAGAGCGTGGAGACGTATCAGAGAAATGCCTTTG
GCGACGTCGATGGGAACACCGCCTACATCATGTACGCCAAACCTCAGGTT
GGCAAGACAACAGAATGTCTGGGGCACCTCCTCAAGTCCTGGGAAAAAAG
TGGGCTTGCGCCGGTCCTTTCGAGGCAAAACTTCTCAGATGAGAAAGGTC
GTTTTGCCCTGTCCTGCGAAGGCTTCAACCGCTTCATCGCCAAAATCTGG
AGGTTTGCTGGTGTGCCCGCTTTGGCACCCAGGATCAGGTTGTTCGACTC
GTAGGACAAGTTCTACAGACGCTCCCTCATTGAAGCATAGAAAAACAATG
GTGGAGAGGTCCCGTTCCACATCATGA
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