mRNA_P-littoralis_Contig1544.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1544.9.1
Unique NamemRNA_P-littoralis_Contig1544.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1544.9.1 vs. uniprot
Match: O78799_PYLLI (Uncharacterized protein n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=O78799_PYLLI)

HSP 1 Score: 124 bits (312), Expect = 3.410e-34
Identity = 58/62 (93.55%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    1 DDLKELQVYPELRQLFETQIIGPKNGKGNVHANNSVKYIKMIFLDVNNEKCRVDSILPPEKL 186
            DDLKE++VYPELRQLFE+QIIGPKNGKGNVHANNSVKYIKMIFLDVNN+KCRVDSILPPEKL
Sbjct:  172 DDLKEIKVYPELRQLFESQIIGPKNGKGNVHANNSVKYIKMIFLDVNNKKCRVDSILPPEKL 233
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BLAST of mRNA_P-littoralis_Contig1544.9.1 vs. uniprot
Match: O78802_PYLLI (Uncharacterized protein n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=O78802_PYLLI)

HSP 1 Score: 103 bits (258), Expect = 1.520e-27
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 DDLKELQVYPELRQLFETQIIGPKNGKGNVHANNSVKYIKMIFLDVNNEKCRVDSILP 174
            ++LK  +  PELRQLFE+QIIGPKNGKGNVHANNSVKYIKMIFLDVNN+KCRVDSILP
Sbjct:   46 ENLKNSKSTPELRQLFESQIIGPKNGKGNVHANNSVKYIKMIFLDVNNKKCRVDSILP 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1544.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
O78799_PYLLI3.410e-3493.55Uncharacterized protein n=1 Tax=Pylaiella littoral... [more]
O78802_PYLLI1.520e-2784.48Uncharacterized protein n=1 Tax=Pylaiella littoral... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1544contigP-littoralis_Contig1544:12076..12264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size189
Hectar predicted targeting categoryother localisation
Exons1
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789739.3746579-CDS-P-littoralis_Contig1544:12075..122641680789739.3746579-CDS-P-littoralis_Contig1544:12075..12264Pylaiella littoralis U1_48CDSP-littoralis_Contig1544 12076..12264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1544.9.1prot_P-littoralis_Contig1544.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1544 12076..12264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1544.9.1

>prot_P-littoralis_Contig1544.9.1 ID=prot_P-littoralis_Contig1544.9.1|Name=mRNA_P-littoralis_Contig1544.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=63bp
DDLKELQVYPELRQLFETQIIGPKNGKGNVHANNSVKYIKMIFLDVNNEK
CRVDSILPPEKL*
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mRNA from alignment at P-littoralis_Contig1544:12076..12264-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1544.9.1 ID=mRNA_P-littoralis_Contig1544.9.1|Name=mRNA_P-littoralis_Contig1544.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig1544:12076..12264- (Pylaiella littoralis U1_48)
GATGATTTAAAAGAACTCCAAGTCTACCCGGAGTTACGTCAATTATTCGA
GACTCAAATAATCGGTCCAAAGAATGGCAAAGGAAATGTTCATGCCAACA
ACAGCGTTAAATATATAAAAATGATATTTCTTGACGTGAATAATGAAAAA
TGCAGAGTAGATTCGATTCTTCCCCCAGAAAAGCTATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1544:12076..12264-

>mRNA_P-littoralis_Contig1544.9.1 ID=mRNA_P-littoralis_Contig1544.9.1|Name=mRNA_P-littoralis_Contig1544.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig1544:12076..12264- (Pylaiella littoralis U1_48)
GATGATTTAAAAGAACTCCAAGTCTACCCGGAGTTACGTCAATTATTCGA
GACTCAAATAATCGGTCCAAAGAATGGCAAAGGAAATGTTCATGCCAACA
ACAGCGTTAAATATATAAAAATGATATTTCTTGACGTGAATAATGAAAAA
TGCAGAGTAGATTCGATTCTTCCCCCAGAAAAGCTATAA
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