mRNA_P-littoralis_Contig1541.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1541.1.1
Unique NamemRNA_P-littoralis_Contig1541.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1541.1.1 vs. uniprot
Match: A0A6H5KHU8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHU8_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 7.690e-16
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 ISDLKARFGDEAVEKSFRVWQILISKILYEPILRLILACESPQRGWKIFLEFY 159
            I DL+  FG+E V+KSF++W ILISK+LY PI  LILA ESPQ+GWKI  EFY
Sbjct:  163 IGDLRRLFGNEVVDKSFKLWNILISKVLYPPIQSLILAFESPQKGWKIVTEFY 215
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BLAST of mRNA_P-littoralis_Contig1541.1.1 vs. uniprot
Match: A0A6H5KDM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM9_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.160e-15
Identity = 31/53 (58.49%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 ISDLKARFGDEAVEKSFRVWQILISKILYEPILRLILACESPQRGWKIFLEFY 159
            +++L+  FG++ ++KSF+ W IL+SK+LY PI  LILACESPQ+GWKI  EFY
Sbjct:   29 VAELRRPFGNDVIDKSFKPWNILMSKVLYPPIQSLILACESPQKGWKIVTEFY 81
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BLAST of mRNA_P-littoralis_Contig1541.1.1 vs. uniprot
Match: A0A6H5L5I8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5I8_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.380e-14
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 ISDLKARFGDEAVEKSFRVWQILISKILYEPILRLILACESPQRGWKIFLEFY 159
            +++L+  FG + V+KS +VW I+ISKILY PI  LI+ACESPQ+GWKI   FY
Sbjct:  171 LAELRGIFGTDVVDKSLKVWNIIISKILYPPIQNLIMACESPQQGWKIVTNFY 223
[Close]
BLAST of mRNA_P-littoralis_Contig1541.1.1 vs. uniprot
Match: A0A6H5JL48_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL48_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.450e-14
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 ISDLKARFGDEAVEKSFRVWQILISKILYEPILRLILACESPQRGWKIFLEFY 159
            +++L+  FG + V+KS ++W I+ISKILY PI  LI+ACESPQ+GWKI  +FY
Sbjct:  171 LAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTKFY 223
[Close]
BLAST of mRNA_P-littoralis_Contig1541.1.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.460e-14
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 ISDLKARFGDEAVEKSFRVWQILISKILYEPILRLILACESPQRGWKIFLEFY 159
            +++L+  FG + V+KS ++W I+ISKILY PI  LI+ACESPQ+GWKI  +FY
Sbjct:  171 LAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTKFY 223
[Close]
BLAST of mRNA_P-littoralis_Contig1541.1.1 vs. uniprot
Match: A0A6H5JW99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW99_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 6.010e-14
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 ISDLKARFGDEAVEKSFRVWQILISKILYEPILRLILACESPQRGWKIFLEFY 159
            +++L+  FG + V+KS ++W I+ISKILY PI  LI+ACESPQ+GWKI   FY
Sbjct:  257 LAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTNFY 309
[Close]
BLAST of mRNA_P-littoralis_Contig1541.1.1 vs. uniprot
Match: A0A6H5K2E9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E9_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 6.070e-14
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 ISDLKARFGDEAVEKSFRVWQILISKILYEPILRLILACESPQRGWKIFLEFY 159
            +++L+  FG + V+KS ++W I+ISKILY PI  LI+ACESPQ+GWKI   FY
Sbjct:  171 LAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTNFY 223
[Close]
BLAST of mRNA_P-littoralis_Contig1541.1.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 6.080e-14
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 ISDLKARFGDEAVEKSFRVWQILISKILYEPILRLILACESPQRGWKIFLEFY 159
            +++L+  FG + V+KS ++W I+ISKILY PI  LI+ACESPQ+GWKI   FY
Sbjct:  317 LAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTNFY 369
[Close]
BLAST of mRNA_P-littoralis_Contig1541.1.1 vs. uniprot
Match: A0A6H5L867_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 6.080e-14
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 ISDLKARFGDEAVEKSFRVWQILISKILYEPILRLILACESPQRGWKIFLEFY 159
            +++L+  FG + V+KS ++W I+ISKILY PI  LI+ACESPQ+GWKI   FY
Sbjct:  171 LAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTNFY 223
[Close]
BLAST of mRNA_P-littoralis_Contig1541.1.1 vs. uniprot
Match: A0A6H5JC89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC89_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.940e-13
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 ISDLKARFGDEAVEKSFRVWQILISKILYEPILRLILACESPQRGWKIFLEFY 159
            +++L+  FG + V+KS ++W I+ISKILY PI  LI+ACESPQ+GWKI    Y
Sbjct:   36 LAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTNIY 88
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1541.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5KHU8_9PHAE7.690e-1666.04Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KDM9_9PHAE1.160e-1558.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5I8_9PHAE2.380e-1458.49Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JL48_9PHAE4.450e-1456.60Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KBD4_9PHAE4.460e-1456.60Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JW99_9PHAE6.010e-1456.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2E9_9PHAE6.070e-1456.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J4N2_9PHAE6.080e-1456.60Integrase catalytic domain-containing protein n=18... [more]
A0A6H5L867_9PHAE6.080e-1456.60Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JC89_9PHAE3.940e-1354.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1541contigP-littoralis_Contig1541:7263..7422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789739.132401-CDS-P-littoralis_Contig1541:7262..74211680789739.132401-CDS-P-littoralis_Contig1541:7262..7421Pylaiella littoralis U1_48CDSP-littoralis_Contig1541 7263..7421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1541.1.1prot_P-littoralis_Contig1541.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1541 7263..7421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1541.1.1

>prot_P-littoralis_Contig1541.1.1 ID=prot_P-littoralis_Contig1541.1.1|Name=mRNA_P-littoralis_Contig1541.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
ISDLKARFGDEAVEKSFRVWQILISKILYEPILRLILACESPQRGWKIFL
EFY
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mRNA from alignment at P-littoralis_Contig1541:7263..7422+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1541.1.1 ID=mRNA_P-littoralis_Contig1541.1.1|Name=mRNA_P-littoralis_Contig1541.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=160bp|location=Sequence derived from alignment at P-littoralis_Contig1541:7263..7422+ (Pylaiella littoralis U1_48)
ATTTCAGATTTAAAGGCACGATTTGGAGACGAGGCTGTAGAGAAGTCCTT
TCGCGTGTGGCAGATCTTGATATCGAAAATACTCTATGAACCCATCCTGC
GGCTGATTTTGGCTTGTGAAAGCCCGCAGAGAGGCTGGAAGATATTCCTT
GAATTCTACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1541:7263..7422+

>mRNA_P-littoralis_Contig1541.1.1 ID=mRNA_P-littoralis_Contig1541.1.1|Name=mRNA_P-littoralis_Contig1541.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig1541:7263..7422+ (Pylaiella littoralis U1_48)
ATTTCAGATTTAAAGGCACGATTTGGAGACGAGGCTGTAGAGAAGTCCTT
TCGCGTGTGGCAGATCTTGATATCGAAAATACTCTATGAACCCATCCTGC
GGCTGATTTTGGCTTGTGAAAGCCCGCAGAGAGGCTGGAAGATATTCCTT
GAATTCTAC
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