mRNA_P-littoralis_Contig154.83.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig154.83.1
Unique NamemRNA_P-littoralis_Contig154.83.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig154.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig154contigP-littoralis_Contig154:269772..270231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size462
Hectar predicted targeting categorysignal peptide
Exons1
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789735.5509896-CDS-P-littoralis_Contig154:269771..2701011680789735.5509896-CDS-P-littoralis_Contig154:269771..270101Pylaiella littoralis U1_48CDSP-littoralis_Contig154 269772..270101 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789735.5614882-UTR-P-littoralis_Contig154:270101..2702311680789735.5614882-UTR-P-littoralis_Contig154:270101..270231Pylaiella littoralis U1_48UTRP-littoralis_Contig154 270102..270231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig154.83.1prot_P-littoralis_Contig154.83.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig154 269772..270101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig154.83.1

>prot_P-littoralis_Contig154.83.1 ID=prot_P-littoralis_Contig154.83.1|Name=mRNA_P-littoralis_Contig154.83.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
ALVLVLGSSVLLPLPAAVSAKERGGRKVKIATACVRECVCCRPIYPARQS
TLFGTCGASAGDTQEREQPKRFFVLSLPFQVLAYIFTARRVLPSVSLVDI
LVEFCVLPT*
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mRNA from alignment at P-littoralis_Contig154:269772..270231+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig154.83.1 ID=mRNA_P-littoralis_Contig154.83.1|Name=mRNA_P-littoralis_Contig154.83.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=460bp|location=Sequence derived from alignment at P-littoralis_Contig154:269772..270231+ (Pylaiella littoralis U1_48)
GCTTTGGTGCTGGTGCTCGGTAGCTCCGTTCTTCTGCCACTGCCTGCTGC
TGTTTCGGCAAAGGAGCGTGGCGGGAGAAAAGTAAAAATCGCGACCGCGT
GCGTGCGCGAGTGTGTGTGTTGTCGTCCCATCTATCCTGCACGCCAGTCT
ACACTTTTCGGTACATGTGGGGCATCAGCGGGGGACACACAGGAGCGAGA
ACAACCCAAGAGATTTTTTGTCCTCAGCCTTCCTTTTCAGGTGCTAGCCT
ACATTTTTACCGCGAGAAGGGTTCTGCCGTCCGTTTCCCTCGTCGACATT
TTAGTCGAGTTTTGTGTCCTCCCGACCTGACCACCTGACACTGCTTGGTG
AGTGTGAGAAAAAAACGATTTACCGTGATACGACCTCACGACATACATGT
CTGAAGGTTTCGGGGTTTCACCGACTGAACCACCGGGGCGACCGGTACGT
TTTGTGCAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig154:269772..270231+

>mRNA_P-littoralis_Contig154.83.1 ID=mRNA_P-littoralis_Contig154.83.1|Name=mRNA_P-littoralis_Contig154.83.1|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig154:269772..270231+ (Pylaiella littoralis U1_48)
GCTTTGGTGCTGGTGCTCGGTAGCTCCGTTCTTCTGCCACTGCCTGCTGC
TGTTTCGGCAAAGGAGCGTGGCGGGAGAAAAGTAAAAATCGCGACCGCGT
GCGTGCGCGAGTGTGTGTGTTGTCGTCCCATCTATCCTGCACGCCAGTCT
ACACTTTTCGGTACATGTGGGGCATCAGCGGGGGACACACAGGAGCGAGA
ACAACCCAAGAGATTTTTTGTCCTCAGCCTTCCTTTTCAGGTGCTAGCCT
ACATTTTTACCGCGAGAAGGGTTCTGCCGTCCGTTTCCCTCGTCGACATT
TTAGTCGAGTTTTGTGTCCTCCCGACCTGA
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