mRNA_P-littoralis_Contig153.126.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig153.126.1
Unique NamemRNA_P-littoralis_Contig153.126.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig153.126.1 vs. uniprot
Match: A0A6H5K0U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U7_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 5.000e-29
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 3 
Query:    6 KRTTATCPGFESLRLQSERASAVMGYLQDGLKETMPKRDFKNHGWGVDPKAKGREAEELTGSNCVSWLSEHSYIGTDRKAKTLTCDCNPDL 278
            K+TTATCP + +LR+Q+ER +A+  Y Q+GL+ETMP  +F   GWGVDP+ KG   +ELT  NCV  LSE+SYIG DRK  TL C CNP++
Sbjct:  304 KKTTATCPSYFALRMQAERGNAIFRYWQNGLRETMPATEFAGKGWGVDPRGKGSNGDELTAGNCVLRLSEYSYIGPDRKTVTLACGCNPEM 394
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BLAST of mRNA_P-littoralis_Contig153.126.1 vs. uniprot
Match: A0A6H5JJH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJH5_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 5.520e-27
Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = 3 
Query:    6 KRTTATCPGFESLRLQSERASAVMGYLQDGLKETMPKRDFKNHGWGVDPKAKGREAEELTGSNCVSWLSEHSYIGTDRKAKTLTCDCNPD 275
            K+TTATCP   +L  Q+ER +A+  Y Q+GL+E MP  +F   GWGVDP+ KG +++EL   NCV WLSE+SYIG +RK  TL C CNPD
Sbjct:  401 KKTTATCPSSFALCKQAERGNAIFRYWQNGLREAMPTTEFAYEGWGVDPRGKGSDSDELIAENCVLWLSEYSYIGPNRKTVTLACGCNPD 490
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BLAST of mRNA_P-littoralis_Contig153.126.1 vs. uniprot
Match: A0A6H5KUW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUW9_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.810e-26
Identity = 49/89 (55.06%), Postives = 58/89 (65.17%), Query Frame = 3 
Query:    6 KRTTATCPGFESLRLQSERASAVMGYLQDGLKETMPKRDFKNHGWGVDPKAKGREAEELTGSNCVSWLSEHSYIGTDRKAKTLTCDCNP 272
            KR T+TCP FES+RLQSER   V+GY QDG  E +P RDF   GWG+DP   G     +T  NCV WLSE+ Y+GTD K +T  C C P
Sbjct:  341 KRATSTCPEFESMRLQSERGHQVLGYWQDGCLEVVPARDFNGGGWGIDPTGVGGSPGHMTAENCVLWLSEYPYVGTDNKTQTEKCGCKP 429
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BLAST of mRNA_P-littoralis_Contig153.126.1 vs. uniprot
Match: A0A6H5JVZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVZ4_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 3.320e-26
Identity = 56/107 (52.34%), Postives = 67/107 (62.62%), Query Frame = 3 
Query:    9 RTTATCPGFESLRLQSERASAVMGYLQDGLKE------------------TMPKRDFKNHGWGVDPKAKGREAEELTGSNCVSWLSEHSYIGTDRKAKTLTC-DCNP 272
            R+T+ CP +ES+RLQ  RA+AV+GY QDG KE                  T+P RDFK+ GWGVDP  K   + ELT  NCV WLSEHSY+G+D K KTL C DC P
Sbjct:  458 RSTSVCPAYESMRLQCLRANAVLGYWQDGCKESXXXXXXXXXXXXXXXXXTVPPRDFKDQGWGVDPTLKNFASLELTKENCVMWLSEHSYVGSDNKTKTLACKDCRP 564
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BLAST of mRNA_P-littoralis_Contig153.126.1 vs. uniprot
Match: A0A6H5JK56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK56_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.070e-24
Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = 3 
Query:    6 KRTTATCPGFESLRLQSERASAVMGYLQDGLKETMPKRDFKNHGWGVDPKAKGREAEELTGSNCVSWLSEHSYIGTDRKAKTLTCD 263
            K+TTA CP   +LR  +ER +A+  Y Q+GL E MP  +F   GWGVDP+ KG +++ELT  NCV WLSE+SYIG DRK  TL C+
Sbjct:  817 KKTTANCPSSFALRKHAERGNAIFRYWQNGLTEAMPTTEFAGKGWGVDPRGKGSDSDELTAENCVLWLSEYSYIGPDRKTATLACE 902
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BLAST of mRNA_P-littoralis_Contig153.126.1 vs. uniprot
Match: A0A6H5JL06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL06_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.250e-14
Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 3 
Query:    6 KRTTATCPGFESLRLQSERASAVMGYLQDGLKETMPKRDFKNHGWGVDPKAKGREAEELTGSNCVSWLSEHSYIGTDR 239
            ++TTATCP   +LR Q+ER +A+  Y Q+GL+ET+P  +F   GWGVDP+ KG +++ELT       +  H+ +G  +
Sbjct:  554 EKTTATCPSSVALRKQAERGNAIFRYWQNGLRETLPTTEFAGKGWGVDPRGKGSDSDELTAEKSRGEVCVHAMVGASQ 631
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig153.126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K0U7_9PHAE5.000e-2957.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJH5_9PHAE5.520e-2755.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUW9_9PHAE1.810e-2655.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVZ4_9PHAE3.320e-2652.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK56_9PHAE1.070e-2454.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL06_9PHAE2.250e-1442.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig153contigP-littoralis_Contig153:484574..485056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size483
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789734.5202346-UTR-P-littoralis_Contig153:484573..4846671680789734.5202346-UTR-P-littoralis_Contig153:484573..484667Pylaiella littoralis U1_48UTRP-littoralis_Contig153 484574..484667 -
1680789734.545429-UTR-P-littoralis_Contig153:484982..4850561680789734.545429-UTR-P-littoralis_Contig153:484982..485056Pylaiella littoralis U1_48UTRP-littoralis_Contig153 484983..485056 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789734.5331728-CDS-P-littoralis_Contig153:484667..4849821680789734.5331728-CDS-P-littoralis_Contig153:484667..484982Pylaiella littoralis U1_48CDSP-littoralis_Contig153 484668..484982 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig153.126.1prot_P-littoralis_Contig153.126.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig153 484668..484982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig153.126.1

>prot_P-littoralis_Contig153.126.1 ID=prot_P-littoralis_Contig153.126.1|Name=mRNA_P-littoralis_Contig153.126.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MGYLQDGLKETMPKRDFKNHGWGVDPKAKGREAEELTGSNCVSWLSEHSY
IGTDRKAKTLTCDCNPDLPPPPHVQIVRLQREEMLARLRLQGSVQPTPCD
RGRT*
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mRNA from alignment at P-littoralis_Contig153:484574..485056-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig153.126.1 ID=mRNA_P-littoralis_Contig153.126.1|Name=mRNA_P-littoralis_Contig153.126.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=483bp|location=Sequence derived from alignment at P-littoralis_Contig153:484574..485056- (Pylaiella littoralis U1_48)
GTGGCAAGCGGACTACGGCCACTTGTCCGGGTTTCGAGTCGTTGCGTCTG
CAGAGCGAGCGAGCCAGCGCCGTCATGGGGTACTTGCAAGATGGCCTGAA
AGAGACGATGCCAAAAAGAGACTTCAAAAACCACGGGTGGGGTGTCGACC
CGAAAGCTAAGGGGCGCGAGGCGGAAGAACTAACAGGGAGCAACTGCGTG
TCGTGGTTGTCGGAGCATTCGTACATCGGCACTGACAGGAAGGCGAAAAC
GCTTACATGCGATTGCAACCCGGACCTGCCCCCCCCACCGCATGTGCAGA
TCGTGCGACTGCAGAGGGAGGAAATGCTCGCTCGCCTGCGGCTGCAGGGG
TCGGTGCAACCTACCCCATGCGACCGTGGCCGAACCTAGTGCGCCTGCGC
CCGGGCCGACGAACGGCGCGACGAACGGCGCGCCTGTATCCGTGGCAGCG
TCCGGTGAGCCTGCGACTAAGGCATCGCCTGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig153:484574..485056-

>mRNA_P-littoralis_Contig153.126.1 ID=mRNA_P-littoralis_Contig153.126.1|Name=mRNA_P-littoralis_Contig153.126.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig153:484574..485056- (Pylaiella littoralis U1_48)
ATGGGGTACTTGCAAGATGGCCTGAAAGAGACGATGCCAAAAAGAGACTT
CAAAAACCACGGGTGGGGTGTCGACCCGAAAGCTAAGGGGCGCGAGGCGG
AAGAACTAACAGGGAGCAACTGCGTGTCGTGGTTGTCGGAGCATTCGTAC
ATCGGCACTGACAGGAAGGCGAAAACGCTTACATGCGATTGCAACCCGGA
CCTGCCCCCCCCACCGCATGTGCAGATCGTGCGACTGCAGAGGGAGGAAA
TGCTCGCTCGCCTGCGGCTGCAGGGGTCGGTGCAACCTACCCCATGCGAC
CGTGGCCGAACCTAG
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