mRNA_P-littoralis_Contig1019.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1019.5.1
Unique NamemRNA_P-littoralis_Contig1019.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1019.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1019contigP-littoralis_Contig1019:21048..21324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size240
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size141
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789357.105417-UTR-P-littoralis_Contig1019:21047..210751680789357.105417-UTR-P-littoralis_Contig1019:21047..21075Pylaiella littoralis U1_48UTRP-littoralis_Contig1019 21048..21075 +
1680789357.1372828-UTR-P-littoralis_Contig1019:21253..213241680789357.1372828-UTR-P-littoralis_Contig1019:21253..21324Pylaiella littoralis U1_48UTRP-littoralis_Contig1019 21254..21324 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789357.117241-CDS-P-littoralis_Contig1019:21075..211981680789357.117241-CDS-P-littoralis_Contig1019:21075..21198Pylaiella littoralis U1_48CDSP-littoralis_Contig1019 21076..21198 +
1680789357.1290386-CDS-P-littoralis_Contig1019:21235..212531680789357.1290386-CDS-P-littoralis_Contig1019:21235..21253Pylaiella littoralis U1_48CDSP-littoralis_Contig1019 21236..21253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1019.5.1prot_P-littoralis_Contig1019.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1019 21076..21253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1019.5.1

>prot_P-littoralis_Contig1019.5.1 ID=prot_P-littoralis_Contig1019.5.1|Name=mRNA_P-littoralis_Contig1019.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=47bp
MRRQTSYFSTFFSFFWSLHYVPNSHFSVLHGTFLTTRNATMLFSYE*
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mRNA from alignment at P-littoralis_Contig1019:21048..21324+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1019.5.1 ID=mRNA_P-littoralis_Contig1019.5.1|Name=mRNA_P-littoralis_Contig1019.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=277bp|location=Sequence derived from alignment at P-littoralis_Contig1019:21048..21324+ (Pylaiella littoralis U1_48)
GCATAGCACATTCTTGACAACACGGAAAATGCGACGACAGACAAGTTATT
TTTCTACTTTTTTTTCTTTCTTCTGGTCTCTTCATTACGTGCCAAACAGC
CACTTTAGTGTACTGCATGGCACATTCTTGACAACAAGGAATGCGACGAT
GGTATCATTTTTTTAATATTATTCTTGATCGTTCAAAGTTGTTTTCGTAT
GAATGACGCAGCAGTATTGCATATTACATTCCTCATGGCGTTCCATATGT
GCCAAACAGCCACTTGCGTGTACTGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1019:21048..21324+

>mRNA_P-littoralis_Contig1019.5.1 ID=mRNA_P-littoralis_Contig1019.5.1|Name=mRNA_P-littoralis_Contig1019.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=141bp|location=Sequence derived from alignment at P-littoralis_Contig1019:21048..21324+ (Pylaiella littoralis U1_48)
ATGCGACGACAGACAAGTTATTTTTCTACTTTTTTTTCTTTCTTCTGGTC
TCTTCATTACGTGCCAAACAGCCACTTTAGTGTACTGCATGGCACATTCT
TGACAACAAGGAATGCGACGATGTTGTTTTCGTATGAATGA
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