mRNA_P-littoralis_Contig152.87.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig152.87.1 vs. uniprot
Match: D8LID5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LID5_ECTSI) HSP 1 Score: 76.3 bits (186), Expect = 3.910e-12 Identity = 93/301 (30.90%), Postives = 129/301 (42.86%), Query Frame = 1
Query: 4 LATGTNKGIGLATVRGLPWTLTRIPSCFSAVKTSQG*LPKTPTRTQDRLRPSSLTSLL---------LCHGPPKLCTRLQRG-----DGEPESG-----TLNNNAGMVPDDGSTPYGFAPA---SLRQLPRRGEDDPHVSPAPEAV*GKGCHPSSAV-PPFVAVY--RRVQL*AEGPHDRPRRGPPLDRGARQRMRVHRVCQRQPSGEVHG---CRLVRGIEGRIDVYGLTKRKPALDHVYPTHPPRKYPALTINELTPSFVKFDLTT--------RLGEVGGVTPAEGASVLIHLATARL 798
+ TG NKGIGL V+GL T + ++G Q+ S L + + TRLQ G DG S L NNAGM+P+D S+P GFA + R + R E P E G+ + SS + P FVA R L + P + R+ + G + G + GI+G + VYGL+K AL ++Y R++P+LTIN P F+K D+T L E+G TPAEGA VL+HLATA++
Sbjct: 87 VVTGANKGIGLEIVKGLLETNKNAFVFLGSRDAARGQNAVQSLLEQNSESYSGRVEALEIDVSDASSVLQASETVRTRLQSGGCGGGDGAGVSSPAYLDALINNAGMMPEDASSPTGFASCIDVNFRGVVRTTEA---FLPLLEPWKGRIVNTSSTLGPSFVAKCSPERQALMTD---------PDVTHAQITRLVDECLAIASADGSLRGKFAAAGLSGIDGNMGVYGLSK---ALVNMYTVQLAREHPSLTINAAHPGFIKTDMTAPFEQSAGRTLEEMGAKTPAEGARVLVHLATAKV 372
BLAST of mRNA_P-littoralis_Contig152.87.1 vs. uniprot
Match: D8LID4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LID4_ECTSI) HSP 1 Score: 74.3 bits (181), Expect = 1.810e-11 Identity = 91/301 (30.23%), Postives = 127/301 (42.19%), Query Frame = 1
Query: 4 LATGTNKGIGLATVRGLPWTLTRIPSCFSAVKTSQG*LPKTPTRTQDRLRPSSLTSLL---------LCHGPPKLCTRLQRG-----DGEPESG-----TLNNNAGMVPDDGSTPYGFAPA---SLRQLPRRGEDD-PHVSPAPEAV*GKGCHPSSAVPPFVAVY--RRVQL*AEGPHDRPRRGPPLDRGARQRMRVHRVCQRQPSG---EVHGCRLVRGIEGRIDVYGLTKRKPALDHVYPTHPPRKYPALTINELTPSFVKFDLTT--------RLGEVGGVTPAEGASVLIHLATARL 798
+ TG NKGIGL V+GL T + ++G Q+ S L + + TRLQ G DG S L NNAGM+P+D S+P GFA + R + R E P + P+ V SS+ P FVA R L + P + R+ + G E + G++G++ VYGL+K AL ++Y R++PAL +N TP F+K D+T L E+G TPAEGA VL+HLAT +
Sbjct: 78 VVTGANKGIGLEIVKGLLETNKNAFVFLGSRDAARGQNAVQSLLEQNSESYSGRVEALEIDVSDASSVLQASETVRTRLQSGGCGGSDGAGVSSPAYLDALINNAGMIPEDASSPTGFASCIDVNFRGVVRTTEAFLPLLEPSKGRV---AITSSSSGPSFVAKCSPERQALMTD---------PDVTHAQITRLVDECLAIASADGGLEEKFAAVGLSGMDGKMGVYGLSK---ALVNMYTVQLAREHPALIVNACTPGFIKTDMTAPFEKTMGKSLDEMGAKTPAEGAKVLVHLATGEV 363
BLAST of mRNA_P-littoralis_Contig152.87.1 vs. uniprot
Match: A0A6H5JJF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJF8_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 9.560e-10 Identity = 71/224 (31.70%), Postives = 100/224 (44.64%), Query Frame = 1
Query: 208 RLQRGDGEPESGT----------LNNNAGMVPDDGSTPYGFAPA---SLRQLPRRGEDD-PHVSPAPEAV*GKGCHPSSAVPPFVAVY--RRVQL*AEGPHDRPRRGPPLDRGARQRMRVHRVCQRQPSG---EVHGCRLVRGIEGRIDVYGLTKRKPALDHVYPTHPPRKYPALTINELTPSFVKFDLTT--------RLGEVGGVTPAEGASVLIHLATARL 798
RLQ G G GT L NNAGM+P+D S+P GFA + R + R E P + P+ V SS+ P FVA R L + P + + + G E + G++G++ VYGL+K AL ++Y R++P L +N TP F+K D+T L E+G TPAEGA V++HLAT +
Sbjct: 175 RLQSGGGGGSDGTGAPSPAYLDALINNAGMIPEDASSPTGFASCIDVNFRGVVRTTEAFLPLLKPSKGRV---AITSSSSGPSFVAKCSPERQALMTD---------PDVTHAQITALVDECLAIASADGSLEEKFAAVGLSGMDGKMGVYGLSK---ALVNMYTIQLAREHPTLIVNACTPGFIKTDMTAPFEKTMGKSLDEMGAKTPAEGAKVVVHLATGEV 383 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig152.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig152.87.1 >prot_P-littoralis_Contig152.87.1 ID=prot_P-littoralis_Contig152.87.1|Name=mRNA_P-littoralis_Contig152.87.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp MVSPNRAPSITTPEWSPTTGLLPTDSRLRPYVNSHGVVKMTRTFLPLLKPback to top mRNA from alignment at P-littoralis_Contig152:402603..403781+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig152.87.1 ID=mRNA_P-littoralis_Contig152.87.1|Name=mRNA_P-littoralis_Contig152.87.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1179bp|location=Sequence derived from alignment at P-littoralis_Contig152:402603..403781+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig152:402603..403781+ >mRNA_P-littoralis_Contig152.87.1 ID=mRNA_P-littoralis_Contig152.87.1|Name=mRNA_P-littoralis_Contig152.87.1|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig152:402603..403781+ (Pylaiella littoralis U1_48)back to top |