mRNA_P-littoralis_Contig152.64.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig152.64.1
Unique NamemRNA_P-littoralis_Contig152.64.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig152.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig152contigP-littoralis_Contig152:338440..339587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1035
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_008750.2
Cds size624
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789725.4476006-UTR-P-littoralis_Contig152:338439..3385221680789725.4476006-UTR-P-littoralis_Contig152:338439..338522Pylaiella littoralis U1_48UTRP-littoralis_Contig152 338440..338522 -
1680789725.4797344-UTR-P-littoralis_Contig152:339259..3395871680789725.4797344-UTR-P-littoralis_Contig152:339259..339587Pylaiella littoralis U1_48UTRP-littoralis_Contig152 339260..339587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789725.4571843-CDS-P-littoralis_Contig152:338522..3389971680789725.4571843-CDS-P-littoralis_Contig152:338522..338997Pylaiella littoralis U1_48CDSP-littoralis_Contig152 338523..338997 -
1680789725.4687176-CDS-P-littoralis_Contig152:339110..3392591680789725.4687176-CDS-P-littoralis_Contig152:339110..339259Pylaiella littoralis U1_48CDSP-littoralis_Contig152 339111..339259 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig152.64.1prot_P-littoralis_Contig152.64.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig152 338523..339259 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig152.64.1

>prot_P-littoralis_Contig152.64.1 ID=prot_P-littoralis_Contig152.64.1|Name=mRNA_P-littoralis_Contig152.64.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=208bp
MVHSFLSETRQGFESVSVSGNTCIYVRYKMCHVPVRGSTTCYTYEMNSES
VSVFVCACVRVCVYPVYSWHQSTPASITWGAPQPGSHKRKNTHTGYFSFL
DLNPPSAVLAFFALISAFFYREKGCSRPFALVNCCVALRGKNLMPRMTYS
EGGEVRKNFCVDHLTQSCTSKYYFRSHTLSRILQSRSTPLPGCLWRFAYT
TDDVPAG*
back to top

mRNA from alignment at P-littoralis_Contig152:338440..339587-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig152.64.1 ID=mRNA_P-littoralis_Contig152.64.1|Name=mRNA_P-littoralis_Contig152.64.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1148bp|location=Sequence derived from alignment at P-littoralis_Contig152:338440..339587- (Pylaiella littoralis U1_48)
GGGGGGATATGCAAGATGTGCACGGGCAGCGGATGTTTCGCCTGCGCGTG
AAATATTTGTCTCCATTTCTTTGTGGGCCTGCATACGCAGTAACCGTGGC
CGTATCTAAGGATGAGTCTGTTGTGCTCGGGCACGCGCAGTAAACAGATC
TTTCACAGCAGGCGATTACATCCATTGTACTTCGAAGTATATATTTGTTT
CGTACAGTATTTGCTCTGTTTCGGCCTCCATTGGGACAAAGGGCACAACA
GCAAGAACTACACCATGGTACATAGCTTTTTATCGGAGACAAGGCAAGGA
CAAAGGGCACAACAGCAAGAACTACACCATGGTACATAGCTTTTTATCGG
AGACAAGGCAAGGTTTTGAGTCTGTGAGTGTGAGTGGCAATACATGTATA
TATGTACGATATAAAATGTGTCATGTACCGGTACGCGGCAGCACCACCTG
CTATACGTACGAAATGAACTCCGAATCATCCCTCGAAGGTTCACGTTCGG
TCGCGGCTATTTTCTCAGATCAGTGTGTGGCGTGCGTGTGTGTGTGTGTG
TGTTTGTGTGTGTGTGTGTATGTGTGTGTGTGTTTGTGTGTGTGTCTGTG
TTTGTGTGTGCTTGCGTGCGTGTGTGTGTTTATCCCGTTTATTCTTGGCA
CCAGTCTACACCTGCCAGCATTACGTGGGGTGCACCCCAGCCGGGGTCAC
ACAAAAGGAAGAACACACACACAGGATATTTTTCTTTTCTTGATCTCAAC
CCACCTTCTGCTGTGCTTGCCTTTTTTGCCTTGATTTCAGCTTTTTTTTA
TCGCGAGAAAGGGTGCAGCCGTCCCTTCGCCCTCGTCAACTGTTGTGTTG
CTCTGCGCGGGAAAAACTTGATGCCTCGTATGACGTACTCAGAAGGGGGG
GAGGTGAGAAAAAACTTTTGCGTGGATCACCTCACGCAGTCTTGTACTTC
GAAGTATTATTTTAGATCACATACCCTTTCTCGTATTTTGCAATCCAGGT
CGACGCCACTACCCGGGTGCCTTTGGCGTTTCGCGTACACCACCGACGAC
GTGCCTGCCGGATAAAGTATTTTGTTATTCGGCTTTTCTGAAAGAAAATG
TTGCAGCTACCTCGCTTGGAAAACCTCAACCCCATTTCTACGATGGAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig152:338440..339587-

>mRNA_P-littoralis_Contig152.64.1 ID=mRNA_P-littoralis_Contig152.64.1|Name=mRNA_P-littoralis_Contig152.64.1|organism=Pylaiella littoralis U1_48|type=CDS|length=624bp|location=Sequence derived from alignment at P-littoralis_Contig152:338440..339587- (Pylaiella littoralis U1_48)
ATGGTACATAGCTTTTTATCGGAGACAAGGCAAGGTTTTGAGTCTGTGAG
TGTGAGTGGCAATACATGTATATATGTACGATATAAAATGTGTCATGTAC
CGGTACGCGGCAGCACCACCTGCTATACGTACGAAATGAACTCCGAATCT
GTGTCTGTGTTTGTGTGTGCTTGCGTGCGTGTGTGTGTTTATCCCGTTTA
TTCTTGGCACCAGTCTACACCTGCCAGCATTACGTGGGGTGCACCCCAGC
CGGGGTCACACAAAAGGAAGAACACACACACAGGATATTTTTCTTTTCTT
GATCTCAACCCACCTTCTGCTGTGCTTGCCTTTTTTGCCTTGATTTCAGC
TTTTTTTTATCGCGAGAAAGGGTGCAGCCGTCCCTTCGCCCTCGTCAACT
GTTGTGTTGCTCTGCGCGGGAAAAACTTGATGCCTCGTATGACGTACTCA
GAAGGGGGGGAGGTGAGAAAAAACTTTTGCGTGGATCACCTCACGCAGTC
TTGTACTTCGAAGTATTATTTTAGATCACATACCCTTTCTCGTATTTTGC
AATCCAGGTCGACGCCACTACCCGGGTGCCTTTGGCGTTTCGCGTACACC
ACCGACGACGTGCCTGCCGGATAA
back to top