mRNA_P-littoralis_Contig1511.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1511.3.1
Unique NamemRNA_P-littoralis_Contig1511.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1511.3.1 vs. uniprot
Match: A0A6H5K4R3_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R3_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 3.740e-36
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 1 
Query:    1 QAEREEAERIFGEEQLEQXXXXXXXXXXXXRQAEESDQACWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVPNGD 249
            QAEREEAERIFGEEQLE XXXXXXXXXXXXRQAEESD+ACWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVP+GD
Sbjct:  505 QAEREEAERIFGEEQLEXXXXXXXXXXXXXRQAEESDRACWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVPDGD 587
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BLAST of mRNA_P-littoralis_Contig1511.3.1 vs. uniprot
Match: A0A812TNR4_9DINO (Baz2a protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TNR4_9DINO)

HSP 1 Score: 50.8 bits (120), Expect = 2.110e-5
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:  118 CWKCGEVDHRSDGDLIILCDGA--DCSGASHVGCCDPPLQGVPNGD 249
            C  CG  DH    + ++LCDG    C G +H+GCC+PPL+ VP GD
Sbjct:  164 CSVCGRSDHP---ETLLLCDGGLPGCEGTTHLGCCNPPLKAVPEGD 206
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1511.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K4R3_9PHAE3.740e-3696.39PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A812TNR4_9DINO2.110e-547.83Baz2a protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1511contigP-littoralis_Contig1511:14307..14567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2903.EOD16051
PFAMsPHD,PWWP
Model size261
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.74e-06
EggNOG OGs294SK@1|root,2RBQ1@2759|Eukaryota
DescriptionPHD-finger
Cds size261
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789724.8369603-CDS-P-littoralis_Contig1511:14306..145671680789724.8369603-CDS-P-littoralis_Contig1511:14306..14567Pylaiella littoralis U1_48CDSP-littoralis_Contig1511 14307..14567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1511.3.1prot_P-littoralis_Contig1511.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1511 14307..14567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1511.3.1

>prot_P-littoralis_Contig1511.3.1 ID=prot_P-littoralis_Contig1511.3.1|Name=mRNA_P-littoralis_Contig1511.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
QAEREEAERIFGEEQLEQEQREEEEAAERERQAEESDQACWKCGEVDHRS
DGDLIILCDGADCSGASHVGCCDPPLQGVPNGDVSI*
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mRNA from alignment at P-littoralis_Contig1511:14307..14567+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1511.3.1 ID=mRNA_P-littoralis_Contig1511.3.1|Name=mRNA_P-littoralis_Contig1511.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig1511:14307..14567+ (Pylaiella littoralis U1_48)
CAGGCGGAGCGGGAAGAGGCGGAGCGCATATTTGGCGAGGAACAGCTGGA
ACAGGAGCAGAGAGAGGAGGAGGAAGCAGCAGAGAGGGAGAGGCAGGCGG
AGGAGAGCGACCAAGCGTGTTGGAAATGTGGAGAGGTGGATCATCGCTCG
GATGGAGACCTCATAATTTTGTGCGATGGTGCCGATTGCTCGGGCGCCAG
CCATGTTGGGTGCTGCGACCCCCCTCTCCAGGGCGTTCCCAATGGAGATG
TGAGTATTTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1511:14307..14567+

>mRNA_P-littoralis_Contig1511.3.1 ID=mRNA_P-littoralis_Contig1511.3.1|Name=mRNA_P-littoralis_Contig1511.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig1511:14307..14567+ (Pylaiella littoralis U1_48)
CAGGCGGAGCGGGAAGAGGCGGAGCGCATATTTGGCGAGGAACAGCTGGA
ACAGGAGCAGAGAGAGGAGGAGGAAGCAGCAGAGAGGGAGAGGCAGGCGG
AGGAGAGCGACCAAGCGTGTTGGAAATGTGGAGAGGTGGATCATCGCTCG
GATGGAGACCTCATAATTTTGTGCGATGGTGCCGATTGCTCGGGCGCCAG
CCATGTTGGGTGCTGCGACCCCCCTCTCCAGGGCGTTCCCAATGGAGATG
TGAGTATTTAG
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