mRNA_P-littoralis_Contig151.69.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig151.69.1
Unique NamemRNA_P-littoralis_Contig151.69.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig151.69.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 8.790e-31
Identity = 67/134 (50.00%), Postives = 84/134 (62.69%), Query Frame = 1 
Query:    1 CRRKCLPTG-RMSWEYKGRTQAGVDVDWISENQIMKAKSFTPLQLDGFIALWHLYHPNITPSEEANHDPRAATALSRKAALQLYPIHTHVQKDFGSGLTLNGQVFDYKDRYWRVRYTDNNWEEVPRTELKRLLR 399
            CRR    +G R  WEYKG++  GV  DW+ E  + +  SFTPLQLD F+ALWHLY P +  +  A    +  T LSR  AL ++PI    QK+   G+ L GQV+DY   YWRVRYTD NWEE+ R EL+RL R
Sbjct: 1751 CRRVQPASGMRTVWEYKGKSGNGVVSDWLPEETMRR--SFTPLQLDCFVALWHLYFPQLA-NASAPDSVKPRTPLSRAQALHVFPIGFTFQKELAGGILLQGQVYDYVSPYWRVRYTDGNWEELSRRELERLAR 1881
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BLAST of mRNA_P-littoralis_Contig151.69.1 vs. uniprot
Match: A0A6H5JMP6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP6_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 4.860e-30
Identity = 65/135 (48.15%), Postives = 89/135 (65.93%), Query Frame = 1 
Query:    1 CRRKCLPTGRMSWEYKGRTQAGVDVDWISENQIMKAKSFTPLQLDGFIALWHLYHPNITPSEEANHDP----RAATALSRKAALQLYPIHTHVQKDFGSGLTLNGQVFDYKDRYWRVRYTDNNWEEVPRTELKRL 393
            CRR    T ++ WEY+G+  +G   DW+SE+ +++  SFTPLQLDGF+ALWHLYHP     ++AN  P    +    LSR  AL+L+PI   ++K+   G+ L GQVFD+   YWRV Y+D NWEE+ R EL+RL
Sbjct:  747 CRRSRSRT-QVVWEYRGKLGSGAVSDWLSEDVMLR--SFTPLQLDGFVALWHLYHP-----QQANDLPPVSVKPRAPLSRAEALKLFPIDFTLRKELDGGVNLQGQVFDFLQPYWRVGYSDQNWEELARRELERL 873
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BLAST of mRNA_P-littoralis_Contig151.69.1 vs. uniprot
Match: A0A6H5KNP4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP4_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 7.500e-17
Identity = 52/127 (40.94%), Postives = 74/127 (58.27%), Query Frame = 1 
Query:   34 SWEYKGRTQAGVDVDWISENQIMKAKSFTPLQLDGFIALWHLYHPNITPSEEANHDPRAAT-----ALSRKAALQLYPIHTHVQK---DFGSGLTLN-GQVFDYKDRYWRVRYTDNNWEEVPRTELK 387
            +WEY+G+ Q G    W++E+ +    SF+PLQLD F ALW  YH     S+ A   P A T       +R+AALQ +P++T V K   D    + L+ G+V D+ D YWRV ++D +WEE  R EL+
Sbjct: 1565 AWEYRGKYQDGTTSSWLTEDTVKD--SFSPLQLDVFHALWEDYHG----SDVAPRPPGAPTRGEREVATREAALQEFPLNTEVAKELRDKDDNIILSRGKVCDFYDPYWRVEFSDGDWEEFTRRELR 1685
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BLAST of mRNA_P-littoralis_Contig151.69.1 vs. uniprot
Match: A0A6H5K3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V4_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.600e-15
Identity = 45/123 (36.59%), Postives = 72/123 (58.54%), Query Frame = 1 
Query:   34 SWEYKGRTQAGVDVDWISENQIMKAKSFTPLQLDGFIALWHLYH-PNITPSEEANHDPRAATALSRKAALQLYPIHTHVQKDF----GSGLTLNGQVFDYKDRYWRVRYTDNNWEEVPRTELK 387
            +WEYKG+ Q G   DW++E+ +    SF+PLQL  F AL   YH  ++ P              +R+AAL+ +P+ T V ++     G+ +   G+V D+ D YWRV+++D++WEE+ R EL+
Sbjct: 2110 AWEYKGKYQEGTPSDWLTEDTVKD--SFSPLQLGIFHALCEDYHGTDVAPRPPGALSRGEHEVATREAALKEFPLDTEVARELLDSDGNVVVSRGKVCDFYDPYWRVKFSDDDWEELTRRELR 2230
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BLAST of mRNA_P-littoralis_Contig151.69.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.530e-9
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:  268 QKDFGSGLTLNGQVFDYKDRYWRVRYTDNNWEEVPRTELKRLL 396
            QKDFG G  L GQVF ++DRYWRVRY++ NWEE+ R EL+R L
Sbjct: 1084 QKDFGGGQKLQGQVFGHRDRYWRVRYSNQNWEELTRQELERCL 1126
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig151.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KEH2_9PHAE8.790e-3150.00RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5JMP6_9PHAE4.860e-3048.15Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KNP4_9PHAE7.500e-1740.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K3V4_9PHAE1.600e-1536.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBF4_9PHAE1.530e-965.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig151contigP-littoralis_Contig151:369162..369905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size744
Hectar predicted targeting categoryother localisation
Exons1
Cds size375
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789723.9203374-UTR-P-littoralis_Contig151:369161..3691911680789723.9203374-UTR-P-littoralis_Contig151:369161..369191Pylaiella littoralis U1_48UTRP-littoralis_Contig151 369162..369191 +
1680789723.941057-UTR-P-littoralis_Contig151:369566..3699051680789723.941057-UTR-P-littoralis_Contig151:369566..369905Pylaiella littoralis U1_48UTRP-littoralis_Contig151 369567..369905 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789723.9323132-CDS-P-littoralis_Contig151:369191..3695661680789723.9323132-CDS-P-littoralis_Contig151:369191..369566Pylaiella littoralis U1_48CDSP-littoralis_Contig151 369192..369566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig151.69.1prot_P-littoralis_Contig151.69.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig151 369192..369566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig151.69.1

>prot_P-littoralis_Contig151.69.1 ID=prot_P-littoralis_Contig151.69.1|Name=mRNA_P-littoralis_Contig151.69.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp
MSWEYKGRTQAGVDVDWISENQIMKAKSFTPLQLDGFIALWHLYHPNITP
SEEANHDPRAATALSRKAALQLYPIHTHVQKDFGSGLTLNGQVFDYKDRY
WRVRYTDNNWEEVPRTELKRLLRA*
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mRNA from alignment at P-littoralis_Contig151:369162..369905+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig151.69.1 ID=mRNA_P-littoralis_Contig151.69.1|Name=mRNA_P-littoralis_Contig151.69.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=744bp|location=Sequence derived from alignment at P-littoralis_Contig151:369162..369905+ (Pylaiella littoralis U1_48)
TGCCGCAGAAAATGTCTACCGACAGGCCGAATGAGTTGGGAATACAAAGG
TCGCACTCAAGCAGGAGTAGACGTGGACTGGATATCGGAGAATCAGATTA
TGAAGGCTAAATCGTTCACACCGCTCCAGTTAGATGGTTTCATAGCTCTT
TGGCATCTGTACCACCCCAATATCACCCCCTCGGAAGAGGCGAACCATGA
TCCCCGCGCCGCTACTGCCCTCTCTCGCAAAGCCGCCTTGCAATTGTATC
CGATACATACCCACGTGCAGAAGGATTTCGGTTCTGGTCTAACCCTGAAC
GGACAGGTGTTCGACTATAAAGATCGATACTGGAGGGTGCGCTACACGGA
CAACAACTGGGAGGAAGTCCCCCGCACCGAACTCAAGCGTTTACTGCGGG
CTTGATAGACTTAGGGTTTTGTTCGCGAAGGTCACGGGAAATGGCGAAGG
AATTTTGGTCCTCTTACTTTCTGTCTACTTTTGGTTCATCTATGCAGCAT
CAGGCGTTGTTGGAATTCGTGTAACGTTCCTTGGTTCAGCAAGGATGCAT
GAAAGATGCTTGACGCCTGTCGTACCAACAGTAACTGATGGTTTCGCCTT
CATAGAGTTGTTAACCGTCGTACGTCCTTTCTCTTGTCTTTTCTCTTGTC
TTTCTTACATCCAGAACGTAAATTGAGGGGTTTTTCCATGAATGGTTTTT
ACCCTCCCTGCAAGTAGTTTCGGGCGTTTGCTTCCTTTTGTCTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig151:369162..369905+

>mRNA_P-littoralis_Contig151.69.1 ID=mRNA_P-littoralis_Contig151.69.1|Name=mRNA_P-littoralis_Contig151.69.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig151:369162..369905+ (Pylaiella littoralis U1_48)
ATGAGTTGGGAATACAAAGGTCGCACTCAAGCAGGAGTAGACGTGGACTG
GATATCGGAGAATCAGATTATGAAGGCTAAATCGTTCACACCGCTCCAGT
TAGATGGTTTCATAGCTCTTTGGCATCTGTACCACCCCAATATCACCCCC
TCGGAAGAGGCGAACCATGATCCCCGCGCCGCTACTGCCCTCTCTCGCAA
AGCCGCCTTGCAATTGTATCCGATACATACCCACGTGCAGAAGGATTTCG
GTTCTGGTCTAACCCTGAACGGACAGGTGTTCGACTATAAAGATCGATAC
TGGAGGGTGCGCTACACGGACAACAACTGGGAGGAAGTCCCCCGCACCGA
ACTCAAGCGTTTACTGCGGGCTTGA
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