mRNA_P-littoralis_Contig151.45.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig151.45.1
Unique NamemRNA_P-littoralis_Contig151.45.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig151.45.1 vs. uniprot
Match: D8LMV2_ECTSI (GSH-dependent dehydroascorbate reductase, monomeric enzymes catalyzing the reduction of DHA into asc n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMV2_ECTSI)

HSP 1 Score: 573 bits (1477), Expect = 5.500e-203
Identity = 282/329 (85.71%), Postives = 304/329 (92.40%), Query Frame = 1 
Query:   55 MVSAGIVASCLALLAPARGFVSPIVTRTPGAEIVAATRASSVRQRAVTR-GDLSMRKTGKFVLSKKALNDESGPKAITVNIKSGEVIKTEKKEEVKQEMAKAGPGLIEPDMELFCKAAADGNALGDCPFAHYIQMVLHYKGLPFKLTPVAPDAKPDWLVEDYEGQLPCLVDSKEAYTESANVVDYIEYFYPEPTLSIKDSDAVAKAKDVTSGVFGALAKCVKNLDVKKDPPLVAAVMTELTKIDAFLKKSKGPYLCGEELTLADCSFAPKLYHASTCLAHFKNAVISPDLESLHKYMDAVYSHEAFVKSSYPPDVVVWGWNQARGTDAK 1038
            MVS  +VASCLALLAPARGFVSPIVTRTPGA+I A +RASSVR RAV R GDLSMRKTGKFVLSKKALND+SGP +ITVN+KSGE+IK EKKE  K+EMAKAGPGL+EPDMELFCKAAADGNALGDCPF HY+ MVL YKGLPFKLTPVAPDAKPDWLVEDYEGQ+PCLVDSKEAYTESAN+VDY+EYFYPEPTLSIKDSDAVAKAK+VTSGVFG+LAKC+KNL+ K+DP L+A  M EL K+DAFLKK KGPYLCGEELTLADCSFAPKLYHASTCLAHFKN VISPDLESLHKYMDA+YSHEAF KSSYPPDV+VWGWN ARGT AK
Sbjct:    1 MVSPTVVASCLALLAPARGFVSPIVTRTPGAQIAATSRASSVRHRAVARRGDLSMRKTGKFVLSKKALNDDSGPTSITVNMKSGEMIKEEKKEAPKEEMAKAGPGLLEPDMELFCKAAADGNALGDCPFTHYVHMVLQYKGLPFKLTPVAPDAKPDWLVEDYEGQMPCLVDSKEAYTESANIVDYVEYFYPEPTLSIKDSDAVAKAKEVTSGVFGSLAKCIKNLNPKEDPMLIADAMAELKKVDAFLKKGKGPYLCGEELTLADCSFAPKLYHASTCLAHFKNTVISPDLESLHKYMDAIYSHEAFTKSSYPPDVIVWGWNNARGTQAK 329
[Close]
BLAST of mRNA_P-littoralis_Contig151.45.1 vs. uniprot
Match: A0A835ZA14_9STRA (Glutathione dehydrogenase (ascorbate) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA14_9STRA)

HSP 1 Score: 321 bits (823), Expect = 7.220e-104
Identity = 159/272 (58.46%), Postives = 199/272 (73.16%), Query Frame = 1 
Query:  229 KFVLSKKALNDESGPKAITVNIKSGEVIKTEKKEEVKQEMAKAGPGLIEPD-MELFCKAAADGNALGDCPFAHYIQMVLHYKGLPFKLTPVAPDAKPDWLVEDYEGQLPCLVDSKEAYTESANVVDYIEYFYPEPTLSIKDSDA-VAKAKDVTSGVFGALAKCVKNLDVKKDPPLVAAVMTELTKIDAFLKKSKGPYLCGEELTLADCSFAPKLYHASTCLAHFKNAVISPDLESLHKYMDAVYSHEAFVKSSYPPDVVVWGWNQARGTDAK 1038
            KF +S KA     G   I +N+K+G++ K   KE   Q    A PG +E   MEL+CKA  D  +LGDCPF HY  MVL YKGLP  L P APDAKPDWLVED+EG++PCLV   EAYTES+ +V YIEYF+PEPTLS + + A +A+A + TSG+F  +A+CVKNLD  +D  +V A+ +EL  +DA L+K+ GP+LCG++LTLADCSFAPKLYH  T LA FKN +I+PD  +LHKYMD +++H AFV+SSYPPDVVVWGWN ARGT AK
Sbjct:   61 KFKISPKAQILADG--VIEMNVKTGQITKDAPKEVKNQ----AKPGSVEVGTMELYCKAGPDSKSLGDCPFTHYAHMVLRYKGLPVTLVPCAPDAKPDWLVEDHEGKMPCLVHDGEAYTESSEIVRYIEYFFPEPTLSPQGASAQMAEAMEATSGLFPLMARCVKNLDAAQDAEMVRAIESELKGVDALLRKNGGPFLCGKDLTLADCSFAPKLYHTKTALAQFKNTIINPDFAALHKYMDTIFAHPAFVESSYPPDVVVWGWNSARGTSAK 326
[Close]
BLAST of mRNA_P-littoralis_Contig151.45.1 vs. uniprot
Match: A0A4D9D9T1_9STRA (Glutathione dehydrogenase (ascorbate) n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9T1_9STRA)

HSP 1 Score: 253 bits (647), Expect = 1.620e-78
Identity = 115/217 (53.00%), Postives = 155/217 (71.43%), Query Frame = 1 
Query:  382 MELFCKAAADGNALGDCPFAHYIQMVLHYKGLPFKLTPVAPDAKPDWLVEDYEGQLPCLVDSKEAYTESANVVDYIEYFYP-EPTLSIKDS--DAVAKAKDVTSGVFGALAKCVKNLDVKKDPPLVAAVMTELTKIDAFLKKSKGPYLCGEELTLADCSFAPKLYHASTCLAHFKNAVISPDLESLHKYMDAVYSHEAFVKSSYPPDVVVWGWNQAR 1023
            +EL CKA  DG ALGDCPF HY+QMVL YKGL ++L P+ P+ KP+WLVE Y G++PCLV  +EAYT+S  +  Y+EYF+P E  L+++D   +   + K  TSGVFGA A+ +KN+D ++DPPL AA+  EL K+D+FL+ +KGP+L GE +TL D + APKLYH    +AHFKN +I P L +L  YM  ++  + F +SSYPPDV+ WGW  AR
Sbjct:   31 IELLCKAGPDGAALGDCPFCHYVQMVLRYKGLRYRLIPLTPEDKPEWLVEGYGGKMPCLVHDEEAYTDSGTITQYLEYFFPGEEPLTVEDEKPELAEEVKTATSGVFGAFARYMKNMDKEQDPPLQAALFEELDKVDSFLQTTKGPFLAGERITLDDMALAPKLYHIKVGVAHFKNVIIPPSLTALAAYMQHMFDMDIFQESSYPPDVITWGWGNAR 247
[Close]
BLAST of mRNA_P-littoralis_Contig151.45.1 vs. uniprot
Match: W7U001_9STRA (Glutathione dehydrogenase (ascorbate) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U001_9STRA)

HSP 1 Score: 254 bits (650), Expect = 5.090e-78
Identity = 115/217 (53.00%), Postives = 155/217 (71.43%), Query Frame = 1 
Query:  382 MELFCKAAADGNALGDCPFAHYIQMVLHYKGLPFKLTPVAPDAKPDWLVEDYEGQLPCLVDSKEAYTESANVVDYIEYFYP-EPTLSIKDS--DAVAKAKDVTSGVFGALAKCVKNLDVKKDPPLVAAVMTELTKIDAFLKKSKGPYLCGEELTLADCSFAPKLYHASTCLAHFKNAVISPDLESLHKYMDAVYSHEAFVKSSYPPDVVVWGWNQAR 1023
            +EL CKA  DG ALGDCPF HY+QMVL YKGL ++L P+ P+ KP+WLVE Y G++PCLV  +EAYT+S  +  Y+EYF+P E  L+++D   +   + K  TSGVFGA A+ +KN+D ++DPPL AA++ EL K+D  L+K+KGP+L GE +TL D + APKLYH    +AHFKN +I P L +L  YM  ++  + F +SSYPPDV+ WGW  AR
Sbjct:   99 IELLCKAGPDGAALGDCPFCHYVQMVLRYKGLRYRLIPLTPEDKPEWLVEGYGGKMPCLVHDEEAYTDSGTITQYLEYFFPGEEPLTVEDENPELAEEVKTATSGVFGAFARYMKNMDKEQDPPLQAALVEELNKVDTLLQKTKGPFLAGERITLDDMALAPKLYHIKVGVAHFKNVIIPPSLTALAAYMQHIFDMDIFQESSYPPDVITWGWGNAR 315
[Close]
BLAST of mRNA_P-littoralis_Contig151.45.1 vs. uniprot
Match: A0A7S2SR18_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR18_9STRA)

HSP 1 Score: 216 bits (550), Expect = 2.390e-64
Identity = 105/221 (47.51%), Postives = 142/221 (64.25%), Query Frame = 1 
Query:  382 MELFCKAAADGNALGDCPFAHYIQMVLHYKGLPFKLTPVAPDAKPDWLVEDYEGQLPCLVDSKEAYTESANVVDYIEYFYPEPTLSIKDSDAVAKAKDVTSGVFGALAKCVKNLDVKKDPPLVAAVMTELTKIDAFLKKSKGP------YLCGEELTLADCSFAPKLYHASTCLAHFKNAVISPDLESLHKYMDAVYSHEAFVKSSYPPDVVVWGWNQARG 1026
            + LF KA  DG ++GDCPFAH ++MVL  KGL + L+P APD KP WLV+ Y+G++PCLV   EAYTES+++VDY+ +F+ EP L+      +A A++ TS  F ALAK +KN D   DP L  A+ TELTKID  L+  +        ++ G    ++DC+ APKLYH      HFKN  I  +  +L KY+  V++H AF K+ YP DVV+WGW  ARG
Sbjct:    6 LHLFVKAGPDGESVGDCPFAHSVRMVLEAKGLEYVLSPCAPDGKPQWLVDGYDGKMPCLVHDGEAYTESSHIVDYLNFFFQEPKLAAP----MAAAQEATSQFFPALAKYLKNTDESADPDLREALETELTKIDMHLQDLQAQHDTEDLFIAGPTFGISDCALAPKLYHMDVAAKHFKNFQIPTECTALEKYLAKVFAHPAFAKTQYPEDVVLWGWGNARG 222
[Close]
BLAST of mRNA_P-littoralis_Contig151.45.1 vs. uniprot
Match: A0A7S2SQ66_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQ66_9STRA)

HSP 1 Score: 216 bits (551), Expect = 1.210e-63
Identity = 117/275 (42.55%), Postives = 165/275 (60.00%), Query Frame = 1 
Query:  220 KTGKFVLSKKALNDESGPKAITVNIKSGEVIKTEKKEEVKQEMAKAGPGLIEPDMELFCKAAADGNALGDCPFAHYIQMVLHYKGLPFKLTPVAPDAKPDWLVEDYEGQLPCLVDSKEAYTESANVVDYIEYFYPEPTLSIKDSDAVAKAKDVTSGVFGALAKCVKNLDVKKDPPLVAAVMTELTKIDAFLKKSKGP------YLCGEELTLADCSFAPKLYHASTCLAHFKNAVISPDLESLHKYMDAVYSHEAFVKSSYPPDVVVWGWNQARG 1026
            K GKF +S  A    S   ++ V   SG+  + + +E+ + + A +        + LF KA  DG ++GDCPFAH ++MVL  KGL + L+P APD KP WLV+ Y+G++PCLV   EAYTES+++VDY+ +F+ EP L+      +A A++ TS  F ALAK +KN D   DP L  A+ TELTKID  L+  +        ++ G    ++DC+ APKLYH      HFKN  I  +  +L KY+  V++H AF K+ YP DVV+WGW  ARG
Sbjct:   19 KKGKFKVSDWAT---SAGDSVVVGDGSGKT-EIQAREQPRVQAAVSSSAKPVQQLHLFVKAGPDGESVGDCPFAHSVRMVLEAKGLEYVLSPCAPDGKPQWLVDGYDGKMPCLVHDGEAYTESSHIVDYLNFFFQEPKLAAP----MAAAQEATSQFFPALAKYLKNTDESADPDLREALETELTKIDMHLQDLQAQHDTEDLFIAGPTFGISDCALAPKLYHMDVAAKHFKNFQIPTECTALEKYLAKVFAHPAFAKTQYPEDVVLWGWGNARG 285
[Close]
BLAST of mRNA_P-littoralis_Contig151.45.1 vs. uniprot
Match: A0A7S3KYN6_9STRA (Glutathione dehydrogenase (ascorbate) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KYN6_9STRA)

HSP 1 Score: 178 bits (452), Expect = 4.310e-49
Identity = 90/232 (38.79%), Postives = 133/232 (57.33%), Query Frame = 1 
Query:  343 EMAKAGPGLIEPDMELFCKAAADGNALGDCPFAHYIQMVLHYKGLPFKLTPVAPDAKPDWLVEDYEGQLPCLVDSKEAYTESANVVDYIEYFYPEPTLSIKDSDAVAKAKDVTSGVFGALAKCVKNLDV--KKDPPLVAAVMTELTKIDAFLKKSKGPYLCGEELTLADCSFAPKLYHASTCLAHFKNAVI--SPDLESLHKYMDAVYSHEAFVKSSYPPDVVVWGWNQARG 1026
            E+ + G    E  M L+ KA  DG ++GDCPFAH+++MVL  KGL ++L P   D KP WLVE Y+G++P L   KE Y ES  + +Y+++F+ +P L + D   +  A+    G+F A+AK +K+       D     A+   L K+++ L    GPY+ G   +L DC  APKLYH  T +  FKN  I  +    ++  YM AV+   +F K++YP +V+ WGW  ARG
Sbjct:   51 EVRREGATPTEGGMTLYLKAGPDGKSVGDCPFAHFVRMVLEEKGLDYELQPCVADTKPAWLVEFYDGKMPALRHRKECYVESDVIAEYVDFFFRDPPLKV-DRPLMEAAETAVEGLFPAIAKYLKHTPDGDADDGEKKTALERSLEKLNSHLAAVDGPYMTGHSFSLVDCGLAPKLYHMKTGVNGFKNGAIDFATQFPAVDAYMTAVFDRPSFQKTAYPTEVITWGWGNARG 281
[Close]
BLAST of mRNA_P-littoralis_Contig151.45.1 vs. uniprot
Match: B7G1X6_PHATC (Glutathione dehydrogenase (ascorbate) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G1X6_PHATC)

HSP 1 Score: 176 bits (447), Expect = 1.440e-48
Identity = 95/237 (40.08%), Postives = 148/237 (62.45%), Query Frame = 1 
Query:  343 EMAKAGPGLIEPDMELFCKAAADGNALGDCPFAHYIQMVLHYKGLPFKLTPVAPDAKPDWLVEDYEGQLPCLVDSKEAYTESANVVDYIEYFYPEPTLS--IKDSDAVAKAKDVTSGVFGALAKCVKNLDV--KKDPPLVAAVMTELTKIDAFLKKSK--GPYLCG--EELTLADCSFAPKLYHASTCLAHFK-NAV-ISPDLESLHKYMDAVYSHEAFVKSSYPPDVVVWGWNQAR 1023
            E+ + G    E  M L+ KAAADG  +GDCPFAH++++VL  KGL ++L P   D KP WL E YEG+LP L   KE Y ES  + DY+++F+P+P+L    K+ D   +A+D  SG F ++AK +K++     +D  +  ++ + L +++  L+     GPYL G  E+LTL DCS +PKLYH  T +  FK NA+ ++    ++++Y+D++   E+F K+ Y  DV++WGW+  R
Sbjct:   30 EIRREGATPTEGGMTLYLKAAADGTLVGDCPFAHFVRLVLEEKGLQYELKPCTEDTKPAWLTEYYEGKLPALRHRKECYVESDVIADYLDFFFPDPSLKGGKKEMD---EAEDAISGFFPSVAKYLKHIPDGDDEDQEMKCSLESVLLRLEEHLQLENRTGPYLVGNGEKLTLLDCSLSPKLYHLRTGIEAFKDNAIDLAQKFPAVNEYLDSMLKRESFQKTVYDKDVIIWGWSNTR 263
[Close]
BLAST of mRNA_P-littoralis_Contig151.45.1 vs. uniprot
Match: A0A7S0AQ91_9STRA (Glutathione dehydrogenase (ascorbate) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AQ91_9STRA)

HSP 1 Score: 174 bits (442), Expect = 5.840e-48
Identity = 99/242 (40.91%), Postives = 144/242 (59.50%), Query Frame = 1 
Query:  331 EVKQEMAKAGPGLIEPDMELFCKAAADGNALGDCPFAHYIQMVLHYKGLPFKLTPVAPDAKPDWLVEDYEGQLPCLVDSKEAYTESANVVDYIEYFYPEPTLSIKDSDAVAKAKDVTSGVFGALAKCVKNLDV--KKDPPLVAAVMTELTKIDAFLKKSK-----GPYLCGE--ELTLADCSFAPKLYHASTCLAHFK-NAV-ISPDLESLHKYMDAVYSHEAFVKSSYPPDVVVWGWNQAR 1023
            E+ +E A   PG     M L+ KA  DG ++GDCPFAHY+++VL+ KGL + L P   + KP WL++ Y+G +P L   KE Y ES  +  Y+++F+ EP LS K    VAKA++VT G+F ++AK +K+     ++D  L  ++M  L++++  L         GPY  G     TL D S APKLYH  T L  FK NA+ ++     L  YMD+V++ ++FV S YP + VVWGW+ AR
Sbjct:   17 EIPEEGATPLPG----GMTLYLKAGPDGTSVGDCPFAHYVRIVLNEKGLEYDLKPSTQETKPQWLIDYYDGSMPALRHRKECYVESDVIAQYLDFFFQEPPLSDKKR-FVAKAQEVTDGLFPSIAKYLKHTPDGDEEDEALKLSLMDALSRLEDHLGDESDGERTGPYFVGNGSTFTLVDASLAPKLYHMQTGLKEFKGNAIDVAAVFPQLRGYMDSVFARQSFVDSIYPEETVVWGWSNAR 253
[Close]
BLAST of mRNA_P-littoralis_Contig151.45.1 vs. uniprot
Match: A0A6U3NUI9_9STRA (Glutathione dehydrogenase (ascorbate) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NUI9_9STRA)

HSP 1 Score: 171 bits (433), Expect = 4.640e-47
Identity = 90/220 (40.91%), Postives = 130/220 (59.09%), Query Frame = 1 
Query:  382 MELFCKAAADGNALGDCPFAHYIQMVLHYKGLPFKLTPVAPDAKPDWLVEDYEGQLPCLVDSKEAYTESANVVDYIEYFYPEPTLSIKDSDAVAKAKDVTSGVFGALAKCVKNLDVKKDPPLVAAVMTE--LTKIDAFLKKSKGPYLCGE--ELTLADCSFAPKLYHASTCLAHFK-NAV-ISPDLESLHKYMDAVYSHEAFVKSSYPPDVVVWGWNQAR 1023
            M L+ KA  DG ++GDCPFAHY+++VLH KGL + + P   D KP WL++ YEG +P L   KE YTES  +  Y+++F+ EP LS K    +A  ++   G F A+AK +K+     D         E  L +I+  L +  GP+L G+  E TLAD S APKL+H    L  FK NA+ +S    ++ +YM A++   +F ++ YP + VVWGW+ AR
Sbjct:    1 MTLYIKAGPDGKSVGDCPFAHYVRIVLHEKGLEYDVRPSTQDTKPQWLIDYYEGSMPALRHRKECYTESDVIAQYLDFFFQEPPLSGKKK-LMAATQEAIDGFFPAVAKYLKHTPDGDDDDAALKQNLEGVLGRIEQHLSEKSGPFLVGDGAEFTLADASLAPKLFHMQVGLQKFKDNAINVSEQFPAVQEYMTAIFDRPSFKETLYPEETVVWGWSNAR 219
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig151.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMV2_ECTSI5.500e-20385.71GSH-dependent dehydroascorbate reductase, monomeri... [more]
A0A835ZA14_9STRA7.220e-10458.46Glutathione dehydrogenase (ascorbate) n=1 Tax=Trib... [more]
A0A4D9D9T1_9STRA1.620e-7853.00Glutathione dehydrogenase (ascorbate) n=1 Tax=Nann... [more]
W7U001_9STRA5.090e-7853.00Glutathione dehydrogenase (ascorbate) n=1 Tax=Nann... [more]
A0A7S2SR18_9STRA2.390e-6447.51Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2SQ66_9STRA1.210e-6342.55Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3KYN6_9STRA4.310e-4938.79Glutathione dehydrogenase (ascorbate) n=1 Tax=Amph... [more]
B7G1X6_PHATC1.440e-4840.08Glutathione dehydrogenase (ascorbate) n=2 Tax=Phae... [more]
A0A7S0AQ91_9STRA5.840e-4840.91Glutathione dehydrogenase (ascorbate) n=1 Tax=Minu... [more]
A0A6U3NUI9_9STRA4.640e-4740.91Glutathione dehydrogenase (ascorbate) n=1 Tax=Dity... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig151contigP-littoralis_Contig151:195869..202425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LMV2
PFAMsGST_C_2,GST_N_3
Model size1387
Max annot lvl2759|Eukaryota
KEGG rclassRC00011,RC00092,RC00948
KEGG koko:K21888
KEGG TC1.A.12.2.1
KEGG ReactionR01108,R03522
KEGG Pathwayko00053,ko00480,ko01100,map00053,map00480,map01100
Hectar predicted targeting categorysignal peptide
Exons8
Evalue4.22e-205
EggNOG OGsKOG1422@1|root,KOG1422@2759|Eukaryota
Ec32 ortholog descriptionGSH-dependent dehydroascorbate reductase
Ec32 orthologEc-02_003740.1
EC1.8.5.1,2.5.1.18
Descriptionchloride channel activity
Cds size987
COG categoryO
BRITEko00000,ko00001,ko01000,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig151.45.1prot_P-littoralis_Contig151.45.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig151 195923..202079 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789722.7712471-UTR-P-littoralis_Contig151:195868..1959221680789722.7712471-UTR-P-littoralis_Contig151:195868..195922Pylaiella littoralis U1_48UTRP-littoralis_Contig151 195869..195922 +
1680789722.8751023-UTR-P-littoralis_Contig151:202079..2024251680789722.8751023-UTR-P-littoralis_Contig151:202079..202425Pylaiella littoralis U1_48UTRP-littoralis_Contig151 202080..202425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789722.7838953-CDS-P-littoralis_Contig151:195922..1960181680789722.7838953-CDS-P-littoralis_Contig151:195922..196018Pylaiella littoralis U1_48CDSP-littoralis_Contig151 195923..196018 +
1680789722.791968-CDS-P-littoralis_Contig151:196942..1971071680789722.791968-CDS-P-littoralis_Contig151:196942..197107Pylaiella littoralis U1_48CDSP-littoralis_Contig151 196943..197107 +
1680789722.8000226-CDS-P-littoralis_Contig151:197753..1978911680789722.8000226-CDS-P-littoralis_Contig151:197753..197891Pylaiella littoralis U1_48CDSP-littoralis_Contig151 197754..197891 +
1680789722.8103461-CDS-P-littoralis_Contig151:198725..1987851680789722.8103461-CDS-P-littoralis_Contig151:198725..198785Pylaiella littoralis U1_48CDSP-littoralis_Contig151 198726..198785 +
1680789722.8263085-CDS-P-littoralis_Contig151:199149..1993021680789722.8263085-CDS-P-littoralis_Contig151:199149..199302Pylaiella littoralis U1_48CDSP-littoralis_Contig151 199150..199302 +
1680789722.8422725-CDS-P-littoralis_Contig151:199662..1997801680789722.8422725-CDS-P-littoralis_Contig151:199662..199780Pylaiella littoralis U1_48CDSP-littoralis_Contig151 199663..199780 +
1680789722.856886-CDS-P-littoralis_Contig151:200303..2004601680789722.856886-CDS-P-littoralis_Contig151:200303..200460Pylaiella littoralis U1_48CDSP-littoralis_Contig151 200304..200460 +
1680789722.8657484-CDS-P-littoralis_Contig151:201979..2020791680789722.8657484-CDS-P-littoralis_Contig151:201979..202079Pylaiella littoralis U1_48CDSP-littoralis_Contig151 201980..202079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig151.45.1

>prot_P-littoralis_Contig151.45.1 ID=prot_P-littoralis_Contig151.45.1|Name=mRNA_P-littoralis_Contig151.45.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=329bp
MVSAGIVASCLALLAPARGFVSPIVTRTPGAEIVAATRASSVRQRAVTRG
DLSMRKTGKFVLSKKALNDESGPKAITVNIKSGEVIKTEKKEEVKQEMAK
AGPGLIEPDMELFCKAAADGNALGDCPFAHYIQMVLHYKGLPFKLTPVAP
DAKPDWLVEDYEGQLPCLVDSKEAYTESANVVDYIEYFYPEPTLSIKDSD
AVAKAKDVTSGVFGALAKCVKNLDVKKDPPLVAAVMTELTKIDAFLKKSK
GPYLCGEELTLADCSFAPKLYHASTCLAHFKNAVISPDLESLHKYMDAVY
SHEAFVKSSYPPDVVVWGWNQARGTDAK*
back to top

mRNA from alignment at P-littoralis_Contig151:195869..202425+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig151.45.1 ID=mRNA_P-littoralis_Contig151.45.1|Name=mRNA_P-littoralis_Contig151.45.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6557bp|location=Sequence derived from alignment at P-littoralis_Contig151:195869..202425+ (Pylaiella littoralis U1_48)
GTCGCAGGACAGCAGGTTCAGCCACACTACACCTTTTTCACATTGCATCA
CACGATGGTCTCCGCTGGAATCGTGGCTTCCTGCCTCGCACTGCTAGCAC
CCGCACGTGGATTCGTCTCCCCCATCGTCACACGAACGCCTGGTGCTGAG
GTGTGTCCTCCTGTTACCAAACAAAAGAGAGCGGTCCGTTTGTCTCCTTG
CAGCTCCCTTCATTACAAACTAACTGCTGTGCGTGTCTCTGATTCATGAT
CGGTAGCTCCTGGATTCTTGACGCCTCCGGACTGTCGTGTGACCGTGGAC
TTGAAAGCAAGCAAATACCAGCTGTCGATCGCATACAGCCTTCCTTGTCC
ACTCGTACGGCTTATAAACCTGCAATATTTCTTTGTCGCATGTGTAGTGT
GTGTGCGGCTTAGAACAGCGTGTGTCCATGCCTGCAGGTGTCCGTGAGAG
CAGATATAACCCTCCCTGCTACGATAAGACACCCGGTAGGCCAGTGCTGA
CAGCCGTCGGCAGACACCCCAAGATGGAGTAAGGCCCCTCGCCGGAGTAT
AGAATGCTCCGCGCGCAAATTGGCGCGCGATTGTGCTCTTGCTGTTGCTC
TGCTGCGCTGTAAGCGTCTGAAGTTTTCGTTTTTGTAGTTCCCTCATCGA
AATGACGTCGCCGATGTTGAATTTGAGACAAAACATGAGCAGATGGAACC
CACATACAGCAGTAATAGAACGCGGTTACTCCTTCGTGTAATGATCGATC
CACCAAGTTCGGCGCAACTTCTGCACCATACCACATCGCGCAGACAGGGT
GCAAAACAGCTACTGCTGTGCTGCACAGCCGTGAGTGCGTGCTTCACGTA
AATGGAAACCAGCTGCTGCCGTGACGTGAAAGTCAGTACCCATGTGTTCC
GTACTCCTTTTATTCAAGTACAGTATAATAGCCGCACATCCCGCCGACAC
CTCTCTCCGTTCACTCATCACTCTTCTGTTTGTTACTACCGCTGCATGAT
TCTTCGTACTGATGTTCCCTGTTGCTGTTGCTGCCGTACCCCTCGTTGCT
GCTGCCGCGTCGGTTTTATGGTAGATCGTGGCCGCCACGCGTGCGTCATC
GGTTCGGCAGCGCGCGGTCACCAGGGGCGATCTTTCCATGCGGAAAACCG
GCAAGTTTGTGCTCAGCAAGAAGGCTTTGAACGACGAGTCGGGGCCCAAG
GCCATCACCGTCAACATCAAGTCGGGGGAAGTCATCAAGGTACAATCACA
GCAGTAGTATACCGTCAGACAGGTGGTCAGCAGAACCTGCTGTGATGTAA
GATTTCAGCTAATTTCTATCTTTTGACGGAGTACAACAGTACAAGAACAC
ATGCACTCGGGAGCATTGACTACTACCCAGCACAGGGTATCACTGTCGGG
AAACGAACTACGTATGTACTCATGAAGCTACTGCTGTACAGCAGTATTTG
AAAGCACGCAGCAGTAGAAATTACTGTTCTCAGGACAGGACCAAACCATG
CTGGGATTCGAGTTTTGCGTTGAGACTCGATTGACACTAGAAAAAGTCGT
CTGGGTAGCACTCAGCACGGAACTATCATTCCGCCCGCAGTGCCGCAAGC
TTAGTCGGGGCGAAAACCACACGCGGATAAAAAAAGCAGGGTTTCCAGGA
AGGGACTGTAGTGCTGTGATACGAAGGTAGAAGTAGGTGTTTCGATATTG
AGATGGGAGCTGTAGTTGAGGAAACAGCCACAGCAGCAGCAACAGCAGCA
GTATATGTAAAAACAACAGCAAGAACAAGATTAACAGCGACAGACACACA
GAACACAACCACAACTGCCATGACATGCTGTCTCGCCCTCTAATTTTCGG
ACATTCGATTGATTCGTGGCGGGCGGCGGCATCAGACGGAGAAGAAGGAG
GAGGTGAAACAAGAGATGGCCAAGGCGGGACCCGGCCTGATCGAGCCGGA
TATGGAGCTGTTCTGCAAGGCAGCCGCCGACGGCAACGCCTTGGGGGACT
GCCCCTTCGCCCACTATATCCAGGTACGTTCTTTCGCGCTATACATCACG
ATTGCTGTTGTTAAATACTTTGAACTACGCACTAGTAGATACACGTCTCT
CTGTGGTGATCTTTTGTTTTTCATTGTGTACGTTTTGTAGCCACAGCGGC
TCCTCTTCGAACCGGGGCGATGCAAGGGAGTGCCTTAGCGTTTTTTCCTG
TAATTTAATGATGCGGGTCGAACGCACCCGCCTCCGATGGACCGTGCCTA
CGGAAACGAAAGGCGTCTCGGCTTCTTGTTGAGAGACAGAATATTTCATT
CCCTTTGGTTTGTTTTTGCCACGGCGGAGTACGCCCAGCTACCGTAGGTC
GCATAATATAACACACCCCCTGGACCGATTTTCAAGCCTCAATTACTCCA
CACCGACGAGGGTGCCAGCATCACACGGCACGGTTTTGGAAAGCTCTCGA
CGAGATGGTTCCAACACCGCCCTTTCCGGCACTCGCACTCTTTCCGCTGT
GGAGTAAGTGTGCTTTGATAATCGGTCCAGGGGGTGTGATATCTTAGGCG
GTACCAGACAGCAAGCAGTCCAAAGTTCTCGTTTGTCGGATGCTGCTGCA
AGGCTTCCGTGTCTTGTTCTCGTCGTGCCGAAGGCGTTCGTTCGTACACA
AAATACAAAATGCAATACATTATTCGTGTGAAGCCACAAGATGGGCGAGA
ACCTCTCCATCAATTTTTAGTGTTCGTCTTTTTTTTTTTGCGTTGTGCTT
ACGCCGGTGTTATGCCTGAAGTAGCACCCGCGGTCTCTTGAGATCGTTCG
CTGTGTTTTCCCTCTCTCTCTCGCTCGCTTTCATGCCCTTCTGTTTCGTT
TCCCCAGATGGTCCTTCACTACAAGGGTCTACCGTTCAAGCTCACCCCTG
TAGCACCGGACGCCAAGGTGCAATGCTGCTGCTGCTGCTGGGTCTGTTTG
TATTGTTGAACAGCATTCTGTAGATGCAAATCATAGCTCTGATGAGCCGA
GGAGCTGTTGAAATGAAGGGTGACAGAGAAAAACGTTTTGTCCCGGCCGC
TCTCCACCCGGCCTGTAGGGATGCTTTGTCGATGGTCAAATGAACGTCAG
GCAAGTGACAGCAGTCGGAAATACCTCCATCACACCCCCCCATGTTGGTA
GTGACTCTAGTAGGAGTAGAAACGGTGCTCTATCTCGGAAGGGATCTATG
GTCAACGGTCGAAATGACGGAAGCAAGCAACCAATGACTACGCCCTCCCC
CTCTCTCGATTATTTTATGTTTTTCACTCAGCCGGATTGGCTGGTTGAGG
ACTACGAGGGTCAGTTGCCGTGCCTCGTCGACAGCAAGGAGGCCTACACG
GAGTCGGCCAACGTGGTCGACTACATCGAGTACTTTTACCCGGAGCCTAC
GCTGAGCATCAAGGACAGCGACGCGGTGGCGAAGGTGTGAGACAGTAGAG
GGCGGGGGGTTTATTTTCTTGAGCCCCATGTTCCTCACCCCAGCCCAACC
CAACCAAACCCAACCGAATCCAACCCAACCCAACCAACCAGACTATGAAC
CGATCATCCCAACCCAGTCCATCCAATCAAATCGAACAAGTTAGGCGGAT
CCGACCCACCCAAACCGCTCCACCCCACCCCACCTCACCCCATCCCACCC
CCCACACCCAACACCCCACACCCCACCCCTACCCCCGTACCCCCACTCCC
ACCCCTACTCTAACCCAATCTCAACCCCAACCCCAACCCCAACGTATTGT
TCTACCCGTCACGTGCCCTATCGTTTGTTTTGTCAATTGCGAAGGCGAAG
GATGTGACTAGCGGCGTGTTCGGAGCCCTGGCGAAGTGCGTGAAGAACCT
CGACGTGAAGAAAGACCCGCCGCTTGTCGCCGCCGTCATGACGGAGCTCA
CCAAGATCGACGGTAAGACATCACCTACAACTGACCCAATTTTTGGGGAA
ATGGCGTGCCCGATAGGCTTGGTGCAACGGCAGGCTTGTGGGCGGTCGTG
TCAAGGTTGCTATCGTTGGTTGCTTGCCTGCTTGCTCCCTTGCTTGCTTG
CTTATTGTTGCTTACTTGTTCTTGTTCTTGTTCTTGTTCTTGGTGTTCTT
GGTTGTACATTAGCTCACCTCTAGTCGATTACTTGTAGTATCCCCCGAAA
AAAGCCAAAGTGGTACTACTTTCGCGTCGCAGTCTCACAGCAGGTATAGG
ATCGGGCTGTCTGTCCGAAGCCACAAGAAAGCGTCCTGAGTCGTTCGTTC
CCCAACGAATGCAAGGCAGCAACGTTGTTGTGTTCCCGTTTTGTTTGTTC
ATATCATACTATCTGCGGTTACTGATCGTGATTGCCGCCGTGGCTCTCTT
CTTCCTGTCGCCTTCCCACCCCCCATCCTGTCCAAAACCCACCCTTGCTT
ATCACCGCCTGGCATTTCGTTGATTTTCGGAGTAGCTTTCTTGAAGAAGA
GCAAGGGGCCGTACCTCTGCGGCGAGGAGCTGACCCTGGCGGACTGCTCG
TTTGCGCCCAAGTTGTACCACGCGTCGACGTGCCTGGCTCACTTCAAGAA
CGCCGTCATCTCGCCCGACCTAGAGTCGCTGCACAAGTACATGTGAGTTG
TTAGTCGGGAGGCCGGGGCGGCGTGTGCGGGTGGGGGGTGGCTGTGTAGG
TGAATGAGGTGGATGTAGGCGGTGGGTTTTGGGAGAGGGTGGAGGAATGC
TCCTTCCGTGACTATGAGAGAGAGAGACAAAACAAGCCTGTTCCTGTAGT
GTGGTCATTGATGTAACCTGTCGAGGAAGGATACGATGTTTACGTCGAAA
TGGAACCTATCTTCAGCTAAAAATCAGCCATCAACATCCCGAGTCCGAGC
GAGAGACTCACAGAACCAACCACGCGTAGGCTGCGACCTTAAGGTCTCCA
TGGCCATGTGAAAGGAAGTGCGCCTGTAGCCAAGGGTGGTACTCAAGTTT
TTTCGATAGTGTTGCCGTGTCTTCCGCGGCGGTACCTCGGTTTCGTTTCT
CCCCGGGGGAAAAGGGGAGGGCGCTAGTGATACTAAGAGTAAGGCGATTT
GACGTTTTGTTTCTGCAGATGGATCCAAGGATCGATGTTTTTAGCTCTCG
ACGGCACGCACGCCAATTTATAGCAGTCGGCACGGACGTGTCTGGAAAAT
GAGCTGAACATGAAAACGCTTTTACAATCATCTGTGGTTTCGTACCAGGA
GGACGCATGGAAGTTCCTTTGTTTGATATCGGGGAAAGGTGGCGCGCGGG
GACGCGCCCGCGCTTTTCAGTCAACAGCAGGTAACGAGGGTTTACGAATG
TATGGAACGTATAATAATTCTCGAATATTACTTATACTCCTCACCGTTGT
GGATATTTTTTTCCATTGTTTGATGAACTCAGCGGCCTGACGGTGTTCGG
TATGATGTGACAGCGTTATTTTTCCTTCGTCGCTCACCAAACCTTCGTCA
TCCCCTCTTCCGTCCCTCCGGGTTTTCCTTTCCCTCCCCCCCCCCCCCCC
CCGCCATCCCCTCCTCCCGCTTTCTTTTCTTCCTGGAATTGTCGCTTGCT
TACTTGCGTGCACTTTCACGATCGTGCTGTCTTCTGGTGGGCGGCGCGTC
GAATCTCTCGTGTCCTGCTGCTTGTATTTTCTTTCTACTTCTTTCACCTG
TCCGCTTTTGCCTTGGGATGGCTTCTTGTCTACGCACCGTCCGTTTTTGG
TTTTCGTCCGTTTTGGTGTTGGTGGTGTTGTATGGTGTGGTGTGATGTGG
TCGGTGGTTTCGACCGGTGTTGCGTGTCTTCGTTCCATCACCTGGCCGGT
TTTTCCCGTGGGATCTTGCTCTTGCCTCGGTTTTTCCCATGTCTCGTCGC
TTGGGCGGTGCTTGCCCTCGCTTCGGAACGGGTGCGATTGAAATCATTTC
GGCCTGTCTCCTTCATCGGCTTGGTTTGTCTTATTTCGTGGTTTGTCGCA
TACTGCGCCGTGATTTTATTTGTCATGTATATTTCGACTCCGGTTGCTGC
TTGATGTGCTGATTGATGTCTTGCTTGGTGTCAAACGTGTGCTCGTGTGC
GTGCGTTTCGGTCGGAATGTTTGTATGGATGGCGTTTTTTCTTGCGTGTT
TCGTTGATCAGGGATGCTGTGTACTCGCACGAGGCGTTCGTTAAGAGCTC
GTACCCCCCGGATGTAGTGGTGTGGGGATGGAACCAGGCTAGGGGAACGG
ACGCAAAGTAGATATAGGAGCACCTTTGTGGGAGACATCGTTGGGCTGAG
AGCACAGCTGTTGTTAATATAATCACATTTTTTATTTTATTGTGCGTAAA
GTTGATTTTCACACGCTGGACTCTGACATTGTCACGCAAAATTTCCTTAT
TCATCATCGGCTGATGATGTAGTCAGTCCCATCGATACGCCCCGGCTCGC
CATCCGCCCAAAATTCCTTGAAATAAGTGTGCATTGCCGTGTTGCCGGCC
CCCAGCAAACGTCTGCCTGCGCGATTTCGAGGTGAAAACAAGCTGTAATA
CATTTTCCGCCGTATGAAATGTTGCGAAACATTTTTGCTCAAGTATAATA
AACTTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig151:195869..202425+

>mRNA_P-littoralis_Contig151.45.1 ID=mRNA_P-littoralis_Contig151.45.1|Name=mRNA_P-littoralis_Contig151.45.1|organism=Pylaiella littoralis U1_48|type=CDS|length=987bp|location=Sequence derived from alignment at P-littoralis_Contig151:195869..202425+ (Pylaiella littoralis U1_48)
ATGGTCTCCGCTGGAATCGTGGCTTCCTGCCTCGCACTGCTAGCACCCGC
ACGTGGATTCGTCTCCCCCATCGTCACACGAACGCCTGGTGCTGAGATCG
TGGCCGCCACGCGTGCGTCATCGGTTCGGCAGCGCGCGGTCACCAGGGGC
GATCTTTCCATGCGGAAAACCGGCAAGTTTGTGCTCAGCAAGAAGGCTTT
GAACGACGAGTCGGGGCCCAAGGCCATCACCGTCAACATCAAGTCGGGGG
AAGTCATCAAGACGGAGAAGAAGGAGGAGGTGAAACAAGAGATGGCCAAG
GCGGGACCCGGCCTGATCGAGCCGGATATGGAGCTGTTCTGCAAGGCAGC
CGCCGACGGCAACGCCTTGGGGGACTGCCCCTTCGCCCACTATATCCAGA
TGGTCCTTCACTACAAGGGTCTACCGTTCAAGCTCACCCCTGTAGCACCG
GACGCCAAGCCGGATTGGCTGGTTGAGGACTACGAGGGTCAGTTGCCGTG
CCTCGTCGACAGCAAGGAGGCCTACACGGAGTCGGCCAACGTGGTCGACT
ACATCGAGTACTTTTACCCGGAGCCTACGCTGAGCATCAAGGACAGCGAC
GCGGTGGCGAAGGCGAAGGATGTGACTAGCGGCGTGTTCGGAGCCCTGGC
GAAGTGCGTGAAGAACCTCGACGTGAAGAAAGACCCGCCGCTTGTCGCCG
CCGTCATGACGGAGCTCACCAAGATCGACGCTTTCTTGAAGAAGAGCAAG
GGGCCGTACCTCTGCGGCGAGGAGCTGACCCTGGCGGACTGCTCGTTTGC
GCCCAAGTTGTACCACGCGTCGACGTGCCTGGCTCACTTCAAGAACGCCG
TCATCTCGCCCGACCTAGAGTCGCTGCACAAGTACATGGATGCTGTGTAC
TCGCACGAGGCGTTCGTTAAGAGCTCGTACCCCCCGGATGTAGTGGTGTG
GGGATGGAACCAGGCTAGGGGAACGGACGCAAAGTAG
back to top