mRNA_P-littoralis_Contig151.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig151.28.1
Unique NamemRNA_P-littoralis_Contig151.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig151.28.1 vs. uniprot
Match: A0A6H5K4B7_9PHAE (GAF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4B7_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.920e-14
Identity = 38/52 (73.08%), Postives = 40/52 (76.92%), Query Frame = 3 
Query:    3 GSREDCGGRDHCAGMRFTHQDEAVIGAFLSLLGPHIFASSMLQPKRKMHIKV 158
            G   + G RD C GM FT QD A+IGAFLSLLGP IF SSMLQPKRKMHIKV
Sbjct:  118 GRMHESGRRDSCTGMHFTPQDMAIIGAFLSLLGPRIFESSMLQPKRKMHIKV 169
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BLAST of mRNA_P-littoralis_Contig151.28.1 vs. uniprot
Match: D8LMW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW7_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 7.780e-14
Identity = 39/52 (75.00%), Postives = 41/52 (78.85%), Query Frame = 3 
Query:    3 GSREDCGGRDHCAGMRFTHQDEAVIGAFLSLLGPHIFASSMLQPKRKMHIKV 158
            G   + G RD C GM FT QD A+IGAFLSLLGP IFASSMLQPKRKMHIKV
Sbjct:  516 GRMHESGRRDSCTGMHFTPQDMAIIGAFLSLLGPRIFASSMLQPKRKMHIKV 567
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig151.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K4B7_9PHAE1.920e-1473.08GAF domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMW7_ECTSI7.780e-1475.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig151contigP-littoralis_Contig151:154578..155945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LMW7
PFAMsGAF,Guanylate_cyc
Model size585
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue7.95e-12
EggNOG OGsKOG3689@1|root,KOG3689@2759|Eukaryota
Description3',5'-cyclic-nucleotide phosphodiesterase activity
Cds size336
COG categoryT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789722.1555042-UTR-P-littoralis_Contig151:154577..1547821680789722.1555042-UTR-P-littoralis_Contig151:154577..154782Pylaiella littoralis U1_48UTRP-littoralis_Contig151 154578..154782 -
1680789722.1961262-UTR-P-littoralis_Contig151:155901..1559451680789722.1961262-UTR-P-littoralis_Contig151:155901..155945Pylaiella littoralis U1_48UTRP-littoralis_Contig151 155902..155945 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789722.1701124-CDS-P-littoralis_Contig151:154782..1550071680789722.1701124-CDS-P-littoralis_Contig151:154782..155007Pylaiella littoralis U1_48CDSP-littoralis_Contig151 154783..155007 -
1680789722.1836371-CDS-P-littoralis_Contig151:155790..1559011680789722.1836371-CDS-P-littoralis_Contig151:155790..155901Pylaiella littoralis U1_48CDSP-littoralis_Contig151 155791..155901 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig151.28.1prot_P-littoralis_Contig151.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig151 154783..155901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig151.28.1

>prot_P-littoralis_Contig151.28.1 ID=prot_P-littoralis_Contig151.28.1|Name=mRNA_P-littoralis_Contig151.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
MRFTHQDEAVIGAFLSLLGPHIFASSMLQPKRKMHIKVSKVGDDEDLFPE
THGVRMQTRQKSTGNLIHTLNADQSFEEDEENEDDEDYKEVTSLGSSVES
TQKGVDSTDPC*
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mRNA from alignment at P-littoralis_Contig151:154578..155945-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig151.28.1 ID=mRNA_P-littoralis_Contig151.28.1|Name=mRNA_P-littoralis_Contig151.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1368bp|location=Sequence derived from alignment at P-littoralis_Contig151:154578..155945- (Pylaiella littoralis U1_48)
AGGGGTCGAGGGAGGACTGCGGCGGCCGCGACCACTGCGCCGGCATGCGC
TTCACTCACCAAGACGAGGCCGTCATCGGGGCCTTCCTATCATTACTGGG
TCCCCATATCTTCGCGTCTAGCATGCTGCAGCCGAAACGTAAAATGCACA
TCAAGGTCGGTCATTCGGTTCCATCATACTTGTACGAGACTCGGCACGAG
CGTCTTGTTGTTCGATAGGAGCGCTTTGAGTAGTCGCCATGGGTATCGAG
AACACCCGCACAAAGTTAACTTCTTCAACGTTTATGGCAGCCTTCTGCAG
TCAAACCCAAAACAAAACCGTCCATATCATATGCTTCGCGGCATTCTTAT
GGGTGTGCTCTTTATAGAATCCCATCCAGCCGTTCCGGTGCTGTGAGAGT
GATATCGCCACGGGAAACAAGCTCCTACAAGGGCTTTGCTGAAAAATTAT
TTGGCGTTTGCGTGTTGAATGACCGTACGTGCGGCCTGCCGATTGTCCGT
GAATACCATGACCGAGTCGAACCATAATCGTGAGGGAAGGAGTGGCGCAT
TCACTCTGGACAAGGAAAATAATCATGCTGCGTCCTATACGCATGAGGTC
ACAGGCACTCACGAACGAGGCTGCCTCTGATCAAGGTCACCCCAGAAAAA
GCATTAAATCATCCGGAAATCTCTCCTCATTTAATATATCTGCAACATGC
AGTAGTGAAGCCTGACTCACACAAGCTTTTCGGGAAATTTAGCACGCATT
TCCTGCCACTCGCCGAACACCTCACGGAAACTAGCCCTATATCGTAAACT
AAAATCCCAGTCTCTGGTGTGAGAAAACCCGGCATGCTCTATCCCCGGCT
CTGTAAGGATGCAAGGATCTGCGAGGGACAAAACACTACTTCAGTTTCTA
TGATGATGATTGCATTCTCCGTTCAATCAATAATCCAGGTGAGCAAAGTA
GGAGACGACGAAGACCTATTCCCCGAAACCCACGGGGTAAGGATGCAGAC
GAGGCAAAAGTCGACGGGTAATCTCATCCACACGCTGAACGCGGATCAGT
CGTTCGAGGAGGACGAGGAGAATGAAGACGACGAAGACTACAAGGAGGTC
ACCAGCTTGGGATCTTCTGTTGAGTCCACACAAAAAGGAGTGGATTCGAC
TGATCCTTGCTGAAGCTGGTGGGCTGCTGGGTGGGGTTATTTTCGGGATG
AAGCCTGTGGCTAGGAATTTGAAATGACGGTTTGTTTTTCGGGATGGTCG
AATATACGCGAGTTGGGCTCAGGGACCATGGGTAGGGCTACGCGGGGAAG
ATATATATCAAGTTGATATATATATACTCGCGCGGAGCGCGAAAAAAATG
GGAAGAGGCGTTGCGGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig151:154578..155945-

>mRNA_P-littoralis_Contig151.28.1 ID=mRNA_P-littoralis_Contig151.28.1|Name=mRNA_P-littoralis_Contig151.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig151:154578..155945- (Pylaiella littoralis U1_48)
ATGCGCTTCACTCACCAAGACGAGGCCGTCATCGGGGCCTTCCTATCATT
ACTGGGTCCCCATATCTTCGCGTCTAGCATGCTGCAGCCGAAACGTAAAA
TGCACATCAAGGTGAGCAAAGTAGGAGACGACGAAGACCTATTCCCCGAA
ACCCACGGGGTAAGGATGCAGACGAGGCAAAAGTCGACGGGTAATCTCAT
CCACACGCTGAACGCGGATCAGTCGTTCGAGGAGGACGAGGAGAATGAAG
ACGACGAAGACTACAAGGAGGTCACCAGCTTGGGATCTTCTGTTGAGTCC
ACACAAAAAGGAGTGGATTCGACTGATCCTTGCTGA
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