mRNA_P-littoralis_Contig151.63.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig151.63.1
Unique NamemRNA_P-littoralis_Contig151.63.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig151.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig151contigP-littoralis_Contig151:336933..342855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size241
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789720.4520571-UTR-P-littoralis_Contig151:336932..3369351680789720.4520571-UTR-P-littoralis_Contig151:336932..336935Pylaiella littoralis U1_48UTRP-littoralis_Contig151 336933..336935 -
1680789720.4881208-UTR-P-littoralis_Contig151:342773..3428551680789720.4881208-UTR-P-littoralis_Contig151:342773..342855Pylaiella littoralis U1_48UTRP-littoralis_Contig151 342774..342855 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789720.4693084-CDS-P-littoralis_Contig151:336935..3370391680789720.4693084-CDS-P-littoralis_Contig151:336935..337039Pylaiella littoralis U1_48CDSP-littoralis_Contig151 336936..337039 -
1680789720.4799824-CDS-P-littoralis_Contig151:342721..3427731680789720.4799824-CDS-P-littoralis_Contig151:342721..342773Pylaiella littoralis U1_48CDSP-littoralis_Contig151 342722..342773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig151.63.1prot_P-littoralis_Contig151.63.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig151 336936..342773 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig151.63.1

>prot_P-littoralis_Contig151.63.1 ID=prot_P-littoralis_Contig151.63.1|Name=mRNA_P-littoralis_Contig151.63.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=52bp
MVYTRGPFLEKMTVSHRGPFRERVAVSLFSPARVGLYCDANMILEPFSLG
K*
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mRNA from alignment at P-littoralis_Contig151:336933..342855-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig151.63.1 ID=mRNA_P-littoralis_Contig151.63.1|Name=mRNA_P-littoralis_Contig151.63.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5923bp|location=Sequence derived from alignment at P-littoralis_Contig151:336933..342855- (Pylaiella littoralis U1_48)
TGTCCGTAAGAGCGCGGATTGGTAGATCTGTTGTCTGACAGTTTCATGTA
GCACCGTGTGTGGAGACTACCAGGGGTATCTTATGGTCTATACACGGGGC
CCCTTTTTGGAGAAAATGACCGTTTCGCACAGAGGTTGCTGGGGGCTCCG
TACGAAAAAAAGTCCAGCCAAAAATCAGTATGCGGTACCTGTGATAGTGA
CACCGACATCCGGAGCCCCTACTTGGCGGCGTGGTTCACAGAGGCTCTGT
CAACCACCTCGTTCTTAATGCTGGGGGCACGCACGGAGACGAAACGTTAC
AGGAGCTAGGACAAAGTCATAGCCTACACCTGTAAGTGGTTCATTGTTTC
ATTTCACCCCTGGAATGCGACAAATTAGGTGCGGAAATGTTAGGAGTGAT
GCTGTTCAACTTGGTTGCGCCGCGCTCGGGAGGGCACCTTTGGCCCAAAG
TTACTACCTCGTAGAGTCCCTCAAATCGCCCGACACTCGGAGGGTGTCCT
TCTTGGTGGATTAGGTGCCGATGAAACCCTGGCGAAAATTCGGATCAGCA
CTACAGAGCGCGTAATCATCATTGCCAAGGGTTGCCTACAAAACGCGGCG
GAACCTCTCAAAACAGGACAGGCACGGTCGCTGACCCTGGAGAGTTGACT
GCTTAGGAGGTTTGGCAGCTTGCTGTTGATGGTTCATGGGATGCTCATGT
TTGGATAGCTTTCCAGACATCCATGGGGCACTTCGCCACGCTCTTGGTTG
TGTATCTGCCAAATTTCCACAGGCGTCCTTCACATCATGCGGAGCTGCAG
AAGCCGCCGTTGTAGCGCTTGCCTTCAACGGGGAGAAGACTTCAGGCACA
CAAGGGCTAGGACAGGGGAATTAGTTCGGACTTTTGAAGACGAGGCTGGT
ATCGCAGACAGGTTTCCTGGCTTTCAGTCGATCGCCGCGGGCACAAACTT
GCTCGCGCTATGTAAACAGTCGGGTTGCCTGCTGGAGCTGTACAAGAAGC
ACGAGTCGGCGCGAAGCAGGGAACGCGTGGCGCGGAAGGCAAGTCATACG
CCGCGCCACAGCCGGCGCTGGAGCGCCGCTCCCGAACCGGTCACGCACGA
CAAACGCCGGCGACTTGATCGGTACTGTACTTCGCCGGAGGCGGTGGACG
CCCTGCGAGATGCTGTTGCTATATCGGGTTGTGTGTTGGACATGTGCGGC
GGACCTGAAGACGCTGTGGCGCAGAGGTTTGGGGGCACGTGTGAAGTTCT
CACGAACGACGTGAGCTCGAGGTAAGGAGGTCCATTTAGGAGAAAAGTCG
TTTTCGAATATTTGTTTCCAGCAGTTCTGTAGATAAGTATTTCCAACGCA
ATGAAAACAAATGGCGTATTCACATTTCCTCTGTTGGTGTTTCTTTCCGT
CCGCCACAAAAGGCTATCGCCGGATACCAACCTGGACGCGAGCGTGCTTC
CTTTTCGGGATGATTTTCTCAAAGCCAACTCCGGAAAGCGACCAGAGTGG
GTCGTCACGAGCCCTCCGTACAAGGGTGCTGTGGGGTTTGTCAAGGCGGC
GTTGGCGGTAGCGACGAAAGGCGCGGCGCTGAAATTGCCGCTATCGTTCC
TAGAACCCTGTGCCGACCGTGGTGGTTGGCTTGCGGAAACCCCCCCGGCT
GTGTGCGTGTTTTTACGGAGGGCGAAGTACACACATGCTCACCACGTGAA
GGTCGGAGAATTTTGGGGGGTATGGTACATCGATGGAGGCAGCTGCGACA
ATAGCAGAGGGTCGAGGCTTGTGTTCTGCCCTGAATAGGGTACTTGTAGG
AGGGGGCGCAGGGCGCCCTGGCGTTGAAGGGAGTTACTTTTCGGCGGTGC
TGGTTAAGCGAAGAATGGTCCATACCTTCGTGTTCCGCGGTGCTTAAGGC
TCCTGCTTGTCGTTCTCCAAAAAGAACTTCGGAAATTAATTTTGAATTTT
TTTTTGGGGGGGGGATGGCTCGCGCTGAGTGTTGTTGTGGAAGTGCGTCG
CTGCTTACCTACACGGGCACTAGGTAGTTGGTGAAATACTCTTTTGGGTG
CTGAGTGGTATGATGCAATGTAGAGTGCGGGCTGTGTAAGTACCCGCTGG
CGATGTTGGCGGGTGGGTCCACCACGTAAGCAAGTGGTGTACACGCACCC
GGAGTTTGTGACGTAGAACATTTAAAAAATGTTTGCAGCACTGGACATCG
ACACCAACAAAATGTTCCGGCTCTAAAGACCAACATTCCATTTTTTTTTT
TTTCAACCACGTATTTACACAGACCTCTCATTTGTTCCCACCCCCCATGA
GGCAGCAACCGGTTCGCCCGGCGATACAACCAACCGCTCTCGCCGGCTGA
TCCATTCCATCTGGTCGCGCTGCTCGTACTCTGCAATATCATCCTCGTGA
AACCCACCGATACTCATGCCCCCGTCATAACCACCCACACCAGGCAAAAC
ATCGCCCTCATCACCTGATTGAGCATCGTCGCTCTCTCCGTCTGTTGATT
CACCCCCTCCTCTATCGAAAAGCGTGGGCCTCTCACAGTTATCTTCTACG
CGGCAAGCGCGTTTACATTTGCGTAGCTCTGAACAAATTGACCCTTTCTT
TCGGCAGATGCAATTCGTACATTGACCCCGTCCCGGCACATCCGAACATT
TACATTTCACCGTCTCGACTCCGCCCGGCCAGATAGTTACCTTCGGTTCT
CTGCGCAACAGCATCCTACAACACCCGTCAACTTGTGGATCCTTCAAATA
CCCCTTGTTGTTCCACTCGGGAACTGAGATGGGGTAGTTTTCAGAGGGTT
CCGAGCCTGCAGCACTCACCGGCACAACCGAAAGCCAATACTCTACCAAC
CATTCCATCCGAAGTACACAGAGCCGCGAATGATTCGGCATTTGCGGGGG
GTGCCGCGGGGACGAGAGGTACGGCGACGACGAGGGGCGTTGGCCTGCGA
CATGTTTCGTACAAAAACAGGATTGGAATATCGTCAAGTCGGGTATCTAG
GGGTTATGAGGAGAGCGAACTATGGGCGGGAAGTGCCGCGTTCACACACA
CGCACAACGTCGGCTTGTTTTCCGTGCCAAAAGAGCTCTACCTACGACTC
AAAGGAAAGCCCTGAGATTCTGTCAAGGTTGTGGCTACATATAGATTCGT
TTGGTCGCGAAAACAACAAGTGTATTGACATATTTACCGGACTGGAGGTC
GCCTGCTGAGAACTTGTGCAGTCGCTGGATGTCGTCTCCTCCGACTCGCT
CTCATCGTCGGTGATGCCTTCGTCTCCGTGCTGGTCGGTGGCGCCCGAGG
CGCCGCTCTGCCGGTACGAGCACAAGAAACAACCGACTTGTTAGCGCTGC
CGTCGAATAAGTATAAATCCAAAGGGGGCATTCGATATCGATGGCGATCT
TTGGTCATTTACTGGCGATGATCGACATAGTTTCAAGTTTTAAGAATTTG
TTCTCACCGGCCATCTCTTGTTTTCCGTTTCGACGCGGCCAAACGGACCA
GTCGCGATGCGACCGATCACGCCACCTAACCCACTTAAAACCGTCCAAAG
TGCCGTGCGAATCATCTCGACCCTCCTGCGAACAAGCACGTGCGAAGCAG
TAGAGCGAGCCCTAGTCGTGGGCTCCTGCGTCTCCACTCCATTCCCCACG
CCCGACCCCGCGTGTGCCTCCTCCACGGCCGCATCCGTCTCCAATCCTAC
ATCGTCTCCTCCCCGCACGTCCTCCGCCTCCTCCCCACCATCCAGTGAGG
AATAAATGTTGCCGGTATCAAACTTGCCGAGAAGGCTCGAGCCCTGCACA
GGAACAACAAACACGAACAACGTTTTCCGATTTTTCCGATTCTATACAAG
CGCAAATTTTTAGTCTTGCCTGCCGACACTGAAAAGCTTACGGTTAGGAC
ACACCTTGCCGATGGCTTTGCTCCTCTCGGCGCCATACACCATGCCCCCC
CCCCCACCATGACCGGCCGTCATGCGCCTATTTTTCCCCACGAGAACCCA
GCCATCTCCACCCTCCTTGACTGCGACAGGCTCCTTCGCGGCGGCGGGCT
CCTTTTTCGCTGCGGTGGGTTCCTCGAGGGCGGCGGGCTCCTCCGGGGCG
GCGGGTTCTTTGTCTGTTGCGCGCTCCTCCTTAGCTGCGACAGGCCTCTT
GGCTGCGACGGGTGCCTTAAGGACGGCAGGCTGCTTCGCTGCTGCAGGTT
CCTTGGCTGCGACAGGCTTCTTGGCTGCGGTTGGCTTCTTCGTTGCGACA
GGCTCCTTGGCTGCCGGCTTCGGTACGACCTTGAACACGGCTTCGGAGTG
CCCACATGGGTGCCATATCGCCATCGGGATGTCTGGCTGCAGGTCGTTGG
CACCGTAACACGGAACGAGTTCCCCTTCTTCCGTTGCCTTCACGAGTCTG
AAGTTTTCTAGACCTGATACGACAGCCGCGGCCTCCATGTGTTTCCCGTC
CCAAAATCCACCTTCACGTTCCGCCACCTTCACCCATGTCTCCCTCTTCA
ATATGAGTACGAGAGGGTTGGACATCAATTCTTGGATGGGCCTCTCCTGT
GCTCTGACGGTGCCAAAGTCGAAGTCGTCAGTAAATTGCCCATACTCCAC
TGTGGGGTGGGTCTGTGCACGTCTGAGACTGGCAACGTCGGGGCGAAGCT
TTCGGATGCTGGCGAGTTGTTGCCGTTCCACGTGGGCTGTTCCGGGGTAA
ACCCCAGACTTGATTCGACAAAGATCGGTGATGGTGTGCGGACCACAATC
TCCCCCGCCAGGGTTTGGCCACGCGTCAAAAAGCGTGCCACTCCCCAGGC
GATACATTTTCCACCTGCCATTTTACAACAGAAAACTTTGAGAGGGTTCT
GTGCATGTCTCCATGGGTTCCCGAAAACGGCAACAAAAACATACCATATA
ATATAATATGGTCCAGCAGAATTGTTGCACTGGAGACAACGATCGACAGT
CTGTCTGTATAAAAGTAGTGCATGGTGGACTGGAGCGTCGGTCGCAGCTT
CTCTACTACTGCCTGTACACCACACTACAGCAGCCCACTGTGTGCCTATA
AGATCTACAGCCGCTCGGCAGTATGTCTCGATCTACTGTACTACTGCTGT
GGGGTACTGACGCGTACCACCGACCGTTGAACATGTGTTTATTTTCAAAT
ATTCAAAATTCATGCTACGTGACGTTGGCGCACGGTGTGCTGCTGTGAGC
TGTTGGATAGGAAGAACCCTTTGTGCTTGTCACATATCTGCACTGGGGGT
GCTCGTCCCAAAATTGCGACCCTAACAACAGCAGCAGCGAGGGTGTCAGG
GTGCTGTTGCGCGGACACATATATGAGGCGCGGGTCGGGCGGACACAGCA
GTGCACACGCTAACAGCAGCAATGAATATTTTCCAGACGACCCTGCGACT
ACAACCCCACCCCTCTAGCACAACCTCCATGTCTCCTTCCTACCTGCAAC
CAGGAGATTCAGCTTCTGGCCCACGGACGGCGTTCCGAACGTGCTCTCAA
GCGGGTGAAGATAGAGCGGCGCGCACAGATAATGGAAGATACCACGCCCC
CCACTGATCTTCAGGCAAAAGTTACCACCTTGTAGAGTCCCTCAAATCGC
CCGACACTTGGAAGGTGTCCTTCTTGGTGGGTTAGGTGCCGATGGCACCC
TGGCGAAAATTCGGATCAGCACTGCAGCGGGAGGTGTTGCAAGGTTTCTC
TCATTTCCTATGGCTAAGCGAGCCGTGCACCCTACCCCCCCCCGGGCAAA
AATTGGCTGGAATTTTGACGAAAAATAGCCGTACGGAGCCCCCAGCAACA
CGTGTGTTCGAGAAAGGACCGTTTCGAGAAAGGGTTGCTGTCTCACTCTT
CTCTCCGGCCCGTGTGGGTCTCTACTGCGACGCTAATATGATACTTGAAC
CATTCTCACTGGGTAAATAAGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig151:336933..342855-

>mRNA_P-littoralis_Contig151.63.1 ID=mRNA_P-littoralis_Contig151.63.1|Name=mRNA_P-littoralis_Contig151.63.1|organism=Pylaiella littoralis U1_48|type=CDS|length=156bp|location=Sequence derived from alignment at P-littoralis_Contig151:336933..342855- (Pylaiella littoralis U1_48)
ATGGTCTATACACGGGGCCCCTTTTTGGAGAAAATGACCGTTTCGCACAG
AGGACCGTTTCGAGAAAGGGTTGCTGTCTCACTCTTCTCTCCGGCCCGTG
TGGGTCTCTACTGCGACGCTAATATGATACTTGAACCATTCTCACTGGGT
AAATAA
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