mRNA_P-littoralis_Contig1017.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1017.9.1
Unique NamemRNA_P-littoralis_Contig1017.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1017.9.1 vs. uniprot
Match: A0A6H5KFA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFA5_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.360e-25
Identity = 46/66 (69.70%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 RLDWLGTLWAEVKGLPPTTHLIVACWTAYVDGLAALEHRKADTKTATAFTLTRFAGWGERLQTWIN 198
            R  WLG LW +VK LPPTT LI   W  +VDG+AALEHRKADTK ATAFTLTRFAGW  RL+ WI+
Sbjct:   58 RRRWLGPLWKKVKDLPPTTRLIPDAWNGHVDGVAALEHRKADTKAATAFTLTRFAGWEGRLRAWIS 123
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BLAST of mRNA_P-littoralis_Contig1017.9.1 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 8.000e-23
Identity = 46/66 (69.70%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    1 RLDWLGTLWAEVKGLPPTTHLIVACWTAYVDGLAALEHRKADTKTATAFTLTRFAGWGERLQTWIN 198
            RLDWLG LWA VKGL PT  LI+A W  +VDG AA+ HRKADTK ATAFTL RFA W  RLQ WI+
Sbjct:  138 RLDWLGELWAVVKGLQPTADLILARWKGHVDGTAAVSHRKADTKAATAFTLARFADWPGRLQAWID 203
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BLAST of mRNA_P-littoralis_Contig1017.9.1 vs. uniprot
Match: A0A6H5K4F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4F6_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 4.290e-18
Identity = 40/66 (60.61%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 RLDWLGTLWAEVKGLPPTTHLIVACWTAYVDGLAALEHRKADTKTATAFTLTRFAGWGERLQTWIN 198
            R  WLG LW +V+ L PTT LI   W  +VDG+AA EHRKADTK ATA TLT  AGW  RL+ WI+
Sbjct:  213 RRRWLGPLWKKVEDLAPTTRLISDAWNGHVDGVAAFEHRKADTKAATASTLTLNAGWEGRLRAWIS 278
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1017.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KFA5_9PHAE2.360e-2569.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIR5_9PHAE8.000e-2369.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4F6_9PHAE4.290e-1860.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1017contigP-littoralis_Contig1017:4275..4474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size201
Hectar predicted targeting categoryother localisation
Exons1
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789356.0098667-CDS-P-littoralis_Contig1017:4276..44741680789356.0098667-CDS-P-littoralis_Contig1017:4276..4474Pylaiella littoralis U1_48CDSP-littoralis_Contig1017 4277..4474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1017.9.1prot_P-littoralis_Contig1017.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1017 4277..4474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1017.9.1

>prot_P-littoralis_Contig1017.9.1 ID=prot_P-littoralis_Contig1017.9.1|Name=mRNA_P-littoralis_Contig1017.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=66bp
RLDWLGTLWAEVKGLPPTTHLIVACWTAYVDGLAALEHRKADTKTATAFT
LTRFAGWGERLQTWIN
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mRNA from alignment at P-littoralis_Contig1017:4275..4474-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1017.9.1 ID=mRNA_P-littoralis_Contig1017.9.1|Name=mRNA_P-littoralis_Contig1017.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=200bp|location=Sequence derived from alignment at P-littoralis_Contig1017:4275..4474- (Pylaiella littoralis U1_48)
CGTCTCGACTGGCTCGGTACACTTTGGGCGGAGGTCAAAGGTCTTCCTCC
TACAACGCACTTGATTGTCGCGTGTTGGACGGCCTATGTGGACGGACTCG
CCGCCCTGGAACACCGCAAGGCTGATACTAAGACGGCGACAGCGTTCACC
TTGACCCGTTTTGCTGGCTGGGGGGAGAGACTCCAAACCTGGATAAACGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1017:4275..4474-

>mRNA_P-littoralis_Contig1017.9.1 ID=mRNA_P-littoralis_Contig1017.9.1|Name=mRNA_P-littoralis_Contig1017.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=198bp|location=Sequence derived from alignment at P-littoralis_Contig1017:4275..4474- (Pylaiella littoralis U1_48)
CGTCTCGACTGGCTCGGTACACTTTGGGCGGAGGTCAAAGGTCTTCCTCC
TACAACGCACTTGATTGTCGCGTGTTGGACGGCCTATGTGGACGGACTCG
CCGCCCTGGAACACCGCAAGGCTGATACTAAGACGGCGACAGCGTTCACC
TTGACCCGTTTTGCTGGCTGGGGGGAGAGACTCCAAACCTGGATAAAC
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