mRNA_P-littoralis_Contig1507.5.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1507.5.3
Unique NamemRNA_P-littoralis_Contig1507.5.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1507.5.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1507contigP-littoralis_Contig1507:8950..10479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1066
Hectar predicted targeting categoryother localisation
Exons3
Cds size690
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789719.9926403-UTR-P-littoralis_Contig1507:8949..92991680789719.9926403-UTR-P-littoralis_Contig1507:8949..9299Pylaiella littoralis U1_48UTRP-littoralis_Contig1507 8950..9299 -
1680789720.0442312-UTR-P-littoralis_Contig1507:10453..104791680789720.0442312-UTR-P-littoralis_Contig1507:10453..10479Pylaiella littoralis U1_48UTRP-littoralis_Contig1507 10454..10479 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789720.00504-CDS-P-littoralis_Contig1507:9299..96271680789720.00504-CDS-P-littoralis_Contig1507:9299..9627Pylaiella littoralis U1_48CDSP-littoralis_Contig1507 9300..9627 -
1680789720.0189915-CDS-P-littoralis_Contig1507:9756..98551680789720.0189915-CDS-P-littoralis_Contig1507:9756..9855Pylaiella littoralis U1_48CDSP-littoralis_Contig1507 9757..9855 -
1680789720.031663-CDS-P-littoralis_Contig1507:10190..104531680789720.031663-CDS-P-littoralis_Contig1507:10190..10453Pylaiella littoralis U1_48CDSP-littoralis_Contig1507 10191..10453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1507.5.3prot_P-littoralis_Contig1507.5.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1507 9300..10453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1507.5.3

>prot_P-littoralis_Contig1507.5.3 ID=prot_P-littoralis_Contig1507.5.3|Name=mRNA_P-littoralis_Contig1507.5.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=230bp
MCGTWKKKGMSETKMLEIVKASDLKRAADLKILIESEVRAIKADLLAAYE
EKVARLEAAMKAESAQVLANMANGLHYVVREVVSQVESAGKKRSSTTDLT
PSPPSTRRSSSRRKQAPTVDSDQDAEARPGTEEKKPASGASDENAVVMMA
RSMGMQMVPANSSGYYPPVGASPALANQVFGGVNAVPLAGGLMSPQGGFI
HAFAQPAGGHPFSQAQAGQPSAVHPFVYR*
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mRNA from alignment at P-littoralis_Contig1507:8950..10479-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1507.5.3 ID=mRNA_P-littoralis_Contig1507.5.3|Name=mRNA_P-littoralis_Contig1507.5.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=1530bp|location=Sequence derived from alignment at P-littoralis_Contig1507:8950..10479- (Pylaiella littoralis U1_48)
GTTTCGCGCTCCCCTCCTCTGTCCGTATGTGTGGCACTTGGAAAAAGAAG
GGAATGTCAGAAACGAAGATGCTGGAGATTGTCAAGGCTTCCGACTTGAA
GCGTGCCGCAGATCTGAAGATCCTCATTGAGAGTGAGGTTCGAGCCATCA
AGGCCGACCTCCTGGCAGCGTACGAGGAAAAGGTCGCGAGGCTGGAAGCT
GCCATGAAGGCGGAAAGTGCCCAGGTCCTGGCGAACATGGCAAACGGCCT
TCACTACGTCGTGCGAGAGGTCGTATCCCAGGTCGAAAGGTGAGAAATTA
AGACAACCCTGCGGTTGGTGTACGTGTTGGCACTTGCGCTTTATTTATTC
GTGTAAATGGTTTGGAGCCGGAAAGGATTTACAGTTACAATGTACCTCAG
ACCTAGGCGGGAAGAAATTTATGTATTTTCCACAAAAAAATACGCAGGAG
TCGCGAGGCAGAGGCCTCATACCCGTTCCCACGCCCCGGCGTTTCGAACT
GTCCCGTCCTTTTCCCCTTCTGAATAAGGTTATGTAGCATGACCTTGTTT
ATTTGAAATCATGTAGACATAACGTCGAACAACTTTTCGTTTACCTGTGC
CTGCTTGCGAAACACGTCTCTTAGTGCTGGAAAAAAGCGCTCGTCCACCA
CCGATCTCACGCCATCCCCGCCGAGCACCAGGCGCAGTTCCTCCAGGAGG
AAGCAGGCGCCGACAGTGGACAGATCAGGATCATTGCTTTTGCTAGTATC
GAAAACACTTCGATGAGGGGCAGGGTGGAAGAATTTTATTGCAGAGGTCG
TAATACTCTTTTCACCCTCGTGACGTTCATCTCTTTGTTTCAATTTTTGT
AGCGATCAAGACGCGGAGGCGAGGCCAGGGACTGAGGAGAAGAAGCCTGC
CTCAGGAGCGTCCGATGAGAACGCGGTCGTGATGATGGCGAGATCGATGG
GCATGCAGATGGTTCCGGCCAACAGCAGCGGCTATTACCCGCCTGTCGGT
GCCAGCCCGGCCCTGGCCAATCAAGTTTTCGGGGGTGTCAATGCGGTGCC
TCTCGCGGGCGGCTTGATGTCTCCCCAGGGCGGATTTATTCACGCCTTTG
CCCAGCCCGCCGGGGGTCACCCTTTTTCGCAGGCGCAAGCCGGGCAACCC
AGCGCTGTGCATCCCTTTGTGTACCGCTGAATCATCGTGTGGTGGCTGTT
GCGGATATACCCCGTTGGGTACGCGGGGTGACCAACGTGTTGCGGCGCAC
AGCAGTGGAGAGCGTGGCCATATTTTTTTTAGTTTCAGTTTTCAACACTT
ACGTCGAAAACGAGTTTTGTTAGTGTCGTGCGTGTCGCCGATTGTAGCTT
TCCGGGCTACCGCCCACCTCCTCAACCACGTAGCGATTTCGAGAGATTGC
GTTTCAAATTGCATTTTTACAGGCAATAGGCGGGCGTTCGCGGGTGTCTC
TTCGCCGATGAATTGTGGCCGCTTCACACTTGCCTCAACGGAGTGCTCGG
TGTCTCATTTTTGTATCGTTGACGAATGTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1507:8950..10479-

>mRNA_P-littoralis_Contig1507.5.3 ID=mRNA_P-littoralis_Contig1507.5.3|Name=mRNA_P-littoralis_Contig1507.5.3|organism=Pylaiella littoralis U1_48|type=CDS|length=690bp|location=Sequence derived from alignment at P-littoralis_Contig1507:8950..10479- (Pylaiella littoralis U1_48)
ATGTGTGGCACTTGGAAAAAGAAGGGAATGTCAGAAACGAAGATGCTGGA
GATTGTCAAGGCTTCCGACTTGAAGCGTGCCGCAGATCTGAAGATCCTCA
TTGAGAGTGAGGTTCGAGCCATCAAGGCCGACCTCCTGGCAGCGTACGAG
GAAAAGGTCGCGAGGCTGGAAGCTGCCATGAAGGCGGAAAGTGCCCAGGT
CCTGGCGAACATGGCAAACGGCCTTCACTACGTCGTGCGAGAGGTCGTAT
CCCAGGTCGAAAGTGCTGGAAAAAAGCGCTCGTCCACCACCGATCTCACG
CCATCCCCGCCGAGCACCAGGCGCAGTTCCTCCAGGAGGAAGCAGGCGCC
GACAGTGGACAGCGATCAAGACGCGGAGGCGAGGCCAGGGACTGAGGAGA
AGAAGCCTGCCTCAGGAGCGTCCGATGAGAACGCGGTCGTGATGATGGCG
AGATCGATGGGCATGCAGATGGTTCCGGCCAACAGCAGCGGCTATTACCC
GCCTGTCGGTGCCAGCCCGGCCCTGGCCAATCAAGTTTTCGGGGGTGTCA
ATGCGGTGCCTCTCGCGGGCGGCTTGATGTCTCCCCAGGGCGGATTTATT
CACGCCTTTGCCCAGCCCGCCGGGGGTCACCCTTTTTCGCAGGCGCAAGC
CGGGCAACCCAGCGCTGTGCATCCCTTTGTGTACCGCTGA
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