mRNA_P-littoralis_Contig1502.5.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1502.5.4
Unique NamemRNA_P-littoralis_Contig1502.5.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1502.5.4 vs. uniprot
Match: A0A6H5KZX2_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZX2_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 6.800e-6
Identity = 36/89 (40.45%), Postives = 48/89 (53.93%), Query Frame = 1 
Query:  118 CKQTFPPKKPSLRKLSPIPTVYLRMTTTSFYKEFKDIFGFKQACKVPL----------GYKFDFPSFNHFVPLLPSADAADHQRQEELE 354
            C   F P   S R  S  PTVYL M+ +   K  K+I  +++A +VP+          GY+ DFP   HFV LLP ADA + QR+E+ E
Sbjct:  162 CHHLFTPTIASRRARSATPTVYLAMSRSGG-KPVKNIQEYERAHRVPMSPDKNGQPRPGYRHDFPDCQHFVYLLPRADAEEMQRREQAE 249
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1502.5.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KZX2_9PHAE6.800e-640.45Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1502contigP-littoralis_Contig1502:8741..13080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size627
Hectar predicted targeting categoryother localisation
Exons6
Cds size432
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1502.5.4prot_P-littoralis_Contig1502.5.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1502 9391..13074 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789719.3649225-UTR-P-littoralis_Contig1502:8740..88221680789719.3649225-UTR-P-littoralis_Contig1502:8740..8822Pylaiella littoralis U1_48UTRP-littoralis_Contig1502 8741..8822 +
1680789719.3788702-UTR-P-littoralis_Contig1502:9283..93901680789719.3788702-UTR-P-littoralis_Contig1502:9283..9390Pylaiella littoralis U1_48UTRP-littoralis_Contig1502 9284..9390 +
1680789719.447474-UTR-P-littoralis_Contig1502:13074..130801680789719.447474-UTR-P-littoralis_Contig1502:13074..13080Pylaiella littoralis U1_48UTRP-littoralis_Contig1502 13075..13080 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789719.3887057-CDS-P-littoralis_Contig1502:9390..95371680789719.3887057-CDS-P-littoralis_Contig1502:9390..9537Pylaiella littoralis U1_48CDSP-littoralis_Contig1502 9391..9537 +
1680789719.3981037-CDS-P-littoralis_Contig1502:9726..97831680789719.3981037-CDS-P-littoralis_Contig1502:9726..9783Pylaiella littoralis U1_48CDSP-littoralis_Contig1502 9727..9783 +
1680789719.408239-CDS-P-littoralis_Contig1502:10459..105521680789719.408239-CDS-P-littoralis_Contig1502:10459..10552Pylaiella littoralis U1_48CDSP-littoralis_Contig1502 10460..10552 +
1680789719.420316-CDS-P-littoralis_Contig1502:11126..112071680789719.420316-CDS-P-littoralis_Contig1502:11126..11207Pylaiella littoralis U1_48CDSP-littoralis_Contig1502 11127..11207 +
1680789719.4343407-CDS-P-littoralis_Contig1502:13020..130741680789719.4343407-CDS-P-littoralis_Contig1502:13020..13074Pylaiella littoralis U1_48CDSP-littoralis_Contig1502 13021..13074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1502.5.4

>prot_P-littoralis_Contig1502.5.4 ID=prot_P-littoralis_Contig1502.5.4|Name=mRNA_P-littoralis_Contig1502.5.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=144bp
MTTTSFYKEFKDIFGFKQACKVPLGYKFDFPSFNHFVPLLPSADAADHQR
QEELEALGTAQVTQQAPMDGANGAAAESEAVALALPKKTEKEEEQKANEA
QKPQQQQQQEAARAEELAVIQCALEKTWSATGGGRLQIYRWAY*
back to top

mRNA from alignment at P-littoralis_Contig1502:8741..13080+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1502.5.4 ID=mRNA_P-littoralis_Contig1502.5.4|Name=mRNA_P-littoralis_Contig1502.5.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=4340bp|location=Sequence derived from alignment at P-littoralis_Contig1502:8741..13080+ (Pylaiella littoralis U1_48)
GATAAAAGCTACACCCAGCAGGTTGCTTCCCGCTCCTCGCTGATGTGCTA
GGGGTCAAGATCCGATGCTTTCGCTTGGGTGCGTTAGATATAAGTTTTAA
ATCGACACTCACTGTGTATGTGTTTGATTTGCTGACTCCAACAAACGTGT
ATTTTGAGTTAAGATGTGTCCGAAGTACATTTCCAGGGATCATGCCGGTA
TCGATTTTTGATGCTGGGCACAAATAATGTCGTACTCAACCTCTATGGTA
TGGAGGTATGGAAATGTACGGTAACCTACGGTAAAGGACCACCGGGGTAA
CGCTACCGTGTGGTCCTCGACCCTATACGTAGACGAGAGCACATTTCGAA
GTACGAGTTAGCGCCTTCGGCAATTAATGATTATTTTAAAATGTCACCGT
ATTTTACCAATCACCATCTACCGCGGTAATTCCCGCCAAAATTTCTGCTG
GAAAATTGCCGAGAGGCCCTCTGGTTGTATTTAAATTGTTGATCAGTAAC
AAGGCATGTACGTGTTTGACCCTTTTTCATTTCCATGGCTCAGGAGCGAC
CGCTTCCACCAACGCGGGTGGGAATCGGTGCAAGCAAACCTTCCCCCCCA
AGAAACCAAGCCTCCGCAAGTTGTCACCGATCCCCACGGTGTACCTGCGC
ATGACAACTACATCTTTCTACAAGGAGTTCAAAGACATTTTCGGGTTCAA
GCAAGCATGCAAGGTGCCGTTGGGGTACAAGTTCGACTTCCCCTCATTCA
ACCACTTCGTTCCGCTTCTACCCTCGGCGGACGCCGCCGACCACCAGGCG
AGATAATTAAGGACCGATAATTAATCTTGACGTGCTAAAACCCATCCAGC
AGATTAAAAAGTTCATGTTCTTGGGACACCGTCGTCGTCAATACCCAGAT
ATCAGCTCAGTTGTTTGATGTGAGACTGTGAAATCCGCAATCATATTTGA
TCGTATTTCGTGCGCTCATTGTCTTTCATATTACAGCGCCAGGAAGAACT
GGAGGCGCTCGGGACGGCTCAGGTCACGCAACAGGCGCCCATGGTATGTA
TGGTATGCTGGAAATTTGCATATAGAGCGATACGAGATCGATGTATTACC
GGAGCAGGTACGCGTGTGTGATGGCGGTGTGTATTTGGTGATCCCTATCG
CGCCTCTCCATTGGGAAGTTGTCCAGCAGTATGACTGTTTTTATGGCAGC
GTACTGTGTGTTTGAGGCGTTCAGTCTCCCCATCGTGCTCTTTCATATGT
ACGTTGTAGGTGCCTTGTACGGGGCACCTTCAAACGCAAAATATGTATAC
GTTTCGATGGGCTAATCACGAATTGTACGGGACGCATTCACGATCAATTA
TCCAGATTACTATTGAAAAATCTTGGAAACATGCTTGAAAAGACGAGCAT
CGACACGACTACACGCAAAACCGTAGACCGTGGGGTTGAACTTGATCGTC
ATCATTCCCACAACGAAAACAACTTCAAGTGCCGACATTTTTTTCGTTTC
CACACTCAGTTCTTCCTGTTTGCATTCAAGGTTCTTGGTTTGGTCTGGAT
ATCAGGTGTATACGGAACTTTTGTCTGCTACGACTCTGTGTCGCACTCGC
GAAGCAACGAAAGAATCAGGTTTTTTCAATATTCTCATTGAAAAACATTT
CCAACACATGTATTCACCTTCGAATTTACCTGCGCCCTGTTGGCCTCCTT
TTATGTTTTTATTTGTCAGGACGGCGCAAACGGAGCGGCGGCGGAGAGTG
AGGCAGTTGCGCTAGCCCTCCCGAAGAAAACCGAAAAGGAGGAGGAGCAG
AAAGCTAATGAGGTTAGTGGTTTCATACGACATGTTATTGGTGAGCGCAA
CTTGTTCGCATCGCTTATTTACCCCGTCAGAATGATTCAAGTATCGTTTT
AGCGTCGCAGCAGAGACCCACAGCAGAGACACACAGGCCGGAGAGAAGAG
TGAGGCATCAGCCCTTTCTCGAAACAGCCCTTCCTCAAAAAAGGAGCCCC
ATGTATCGACCATAACATGCCCCAGGAAGTCTCCACACACGGTGCTACGT
GCAACAGTAAAAGGCAAAAAAGCTACAAATCCGCGCTCTTACGGACACAA
CAAGAGAGCGAAAAGAGCAGCAAAGAAGGTGTTTGTGTGCGTGGTTTTAT
CAAGATTAGCTGGTGAAGATTTGCACGTCACATGTCGCAAAGGGTCAACG
GCTTCTCGCCGGACGTAGTGTGCAGTACTCCTACTCATACAGGGGCGAAT
TTCAAGCATAACACTGGTGCTAGTCGCATATGGAAGACGGTTCTCAATTA
TTGAATTTAGCAACGAGTCGCAACAGCTCTCAAAATGTCTGCGTCCTCCA
CTGTCGACTGCTTGATGCACCATTGAATGCCCACAGGCGCAAAAGCCGCA
GCAGCAGCAGCAGCAGGAGGCGGCTAGAGCAGAGGAACTAGCGGTCATTC
AGTGTGCTCTTGAAAAGGTGATGTTGTCGAGGTGGCTTTTGGAATAACCA
AACCAGAGGTCGTCCTATTTGGATTACATAATTGACAATAATTTATTGTG
ATACGTCCCTGTATCAAAATAGTACGTACATTCAGACGGCCATCTGGCTC
GTTTCCATTTGGCTTCACCACTGGAGTTAAAATTTGTTCGAAGCACTCTC
TATATATTTGGACTTTAGCACTATCTTTGGCGGCAATAATAAGATACGGA
AGCTCTGCTTGATACCGGAGCATGCCCCTGAAAGTGGCGTGTGCTTGAGT
GCTTACGCAGGTGTATGTCACGGCAGTTCCCTTGGTTGACTTTCTACTCT
TCTATTTTTGGCGTTGACCTTCAGATCATGATAAATTTCCTGAAATGGGT
AAGGAAGCGCTCCGACCAAGCTGCAGATGTGTCGAATGGTTCACCTTGTG
GCGATAATTTCCGAGGCAGTTTCGCTGAAAACACTGAAAATTGGAAGTTG
CTCTCGTCACGCTAGATAGGGTAAAAGACCTCCACAGTGTGATTCATCAT
CGCTGCGCGTGAGAAAACACCGCGGATATTAATTTCAAACAGAACAGCAA
GCGCCAAGCCAACTCTGCCGGCGACAACTATGTCCATGAAGCTACCGTCG
TGCGAATGACTCGCACCGTATGCCTTCAATAGGGTGTTTGCGCATGAGGA
TTTCTTATCTCAAAATTCCTTTCCTTTCCCAAAAAGAACAAAGTTGCGGT
GAGGCTGTTTCTCACGGTCAACGTTACTTTGACCTGGCGTTTTGACTCCC
CTACAAGAATCCAACAAGAGAACCCCCCCCCCCCCCCCCCCCCACCTGCG
AATAGCCCTGTTGCACAAATCATGCGACAGCACCAACCAGAACTCGATCC
CTAGAGCACAGATGCCGATCAAACTTGATAAAGCGTGTGCCCCTTTGTTC
TCAAGTTGACCACAGCAGTTTGGTGGCAGTGGGTTCGGGCTGCGGCGAAA
TTTTGGCGGCGGTGTGTGTTGGAGATGGAAAGACAGATGAAACGAAATAA
CAGACTTCGCTCCTGTTTTTCCGGCCAAAAAACAGGCCCGTACAGCGTTT
TTGTTTTCACCGGATTTTCCTACCTCAACCCACTCCGCCGCCGAAACCTC
GCCACAGCTAAACCCCACACCCACCAAATTTCCTGTGGCCAAACTGAGAA
CACCAGAGGATGCCGTCCAACAGTTGTAGTCTCGATTGGTGTCCCAGGGG
TCGAGTTCTGCTTTGTGCTGTCCCCTGTTGTGCTCAAAAAGTAGATTTTT
CAATCATTTGGGCTCTCTGTTATTGGGGCGGGGGGGTACCTCGGGAGAAA
AAACGCAGGACCAAATAACGGAGCCGTAAGAAACGGTCCAGAGAAGAAAT
CCTTTTGACACAAAATTGAACTAGACGTCATCTGATGAGTTGTAGAAACA
CTGGTAGATGAATCTTATATTTTGTGTTTGTTGCAATATCTACTCCAGAT
CCTCGTCTGGAGAGAGGCGAACATATTGATTTGGTTCTAACTTAAAAAAA
ACACAGAGAGTTTGTGTCTTTAAGCGCGTCATACATGGCAGCGGTTCCCT
TGTCATGCTAGGCCAAACAGTACGAGATTTGTGTGACTCGCAGGAGGTCG
AAACGAACAGGTGCGCTGTGTTTGGAGAGTTACCGGAAGCGTAGTAAACG
CCTCAAAGACCTGGCGCACATGGTTCGTGTAAGATTAATGTTAAAGGTCA
ATGCTAAATTTTTGATCACCTACAAGTCCACTTTGTGTTCGCAATGTATC
GTTTGGCGAACTTTTCTCAACCTTCTACAGACTTGGAGCGCCACAGGTGG
TGGACGGCTACAAATTTATCGATGGGCATACTGAGTCGCT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1502:8741..13080+

>mRNA_P-littoralis_Contig1502.5.4 ID=mRNA_P-littoralis_Contig1502.5.4|Name=mRNA_P-littoralis_Contig1502.5.4|organism=Pylaiella littoralis U1_48|type=CDS|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig1502:8741..13080+ (Pylaiella littoralis U1_48)
ATGACAACTACATCTTTCTACAAGGAGTTCAAAGACATTTTCGGGTTCAA
GCAAGCATGCAAGGTGCCGTTGGGGTACAAGTTCGACTTCCCCTCATTCA
ACCACTTCGTTCCGCTTCTACCCTCGGCGGACGCCGCCGACCACCAGCGC
CAGGAAGAACTGGAGGCGCTCGGGACGGCTCAGGTCACGCAACAGGCGCC
CATGGACGGCGCAAACGGAGCGGCGGCGGAGAGTGAGGCAGTTGCGCTAG
CCCTCCCGAAGAAAACCGAAAAGGAGGAGGAGCAGAAAGCTAATGAGGCG
CAAAAGCCGCAGCAGCAGCAGCAGCAGGAGGCGGCTAGAGCAGAGGAACT
AGCGGTCATTCAGTGTGCTCTTGAAAAGACTTGGAGCGCCACAGGTGGTG
GACGGCTACAAATTTATCGATGGGCATACTGA
back to top