mRNA_P-littoralis_Contig1017.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1017.24.1
Unique NamemRNA_P-littoralis_Contig1017.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1017.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1017contigP-littoralis_Contig1017:79682..80152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size471
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789355.9194465-UTR-P-littoralis_Contig1017:79681..798301680789355.9194465-UTR-P-littoralis_Contig1017:79681..79830Pylaiella littoralis U1_48UTRP-littoralis_Contig1017 79682..79830 +
1680789355.940401-UTR-P-littoralis_Contig1017:80145..801521680789355.940401-UTR-P-littoralis_Contig1017:80145..80152Pylaiella littoralis U1_48UTRP-littoralis_Contig1017 80146..80152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789355.9311996-CDS-P-littoralis_Contig1017:79830..801451680789355.9311996-CDS-P-littoralis_Contig1017:79830..80145Pylaiella littoralis U1_48CDSP-littoralis_Contig1017 79831..80145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1017.24.1prot_P-littoralis_Contig1017.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1017 79831..80145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1017.24.1

>prot_P-littoralis_Contig1017.24.1 ID=prot_P-littoralis_Contig1017.24.1|Name=mRNA_P-littoralis_Contig1017.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MLRYSQEGKKGRCRSERAGGIEILSAKTFRNTSTQFFALELSCFGHGSKG
PRGILRDLEKGRVILNLFCTKRCCILYQMRCMHDLMSSLKLKSMPDNLKV
LFDR*
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mRNA from alignment at P-littoralis_Contig1017:79682..80152+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1017.24.1 ID=mRNA_P-littoralis_Contig1017.24.1|Name=mRNA_P-littoralis_Contig1017.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=471bp|location=Sequence derived from alignment at P-littoralis_Contig1017:79682..80152+ (Pylaiella littoralis U1_48)
CGGCCAGTAGCAAGAGCTCCTGCGGTGCCGGCGGATCCTCCTCCCGTTTA
CGGCTCCAACACCGCCGCAGCGCTAAAGGTATGTATGTTCGATACAAAAA
CCTGCTGTTGGTCACATAAGGTACCACGGGACCCACCTCAACCGACTCAA
TGCTCCGTTACTCACAAGAAGGAAAAAAGGGTCGGTGCCGTAGCGAAAGG
GCGGGTGGTATTGAAATTCTTTCGGCGAAAACTTTCCGGAACACGTCGAC
CCAGTTTTTTGCGTTGGAGCTATCGTGCTTTGGACACGGGTCGAAGGGGC
CACGTGGTATCTTGCGCGACCTCGAAAAGGGACGCGTTATTTTAAACTTG
TTTTGTACCAAAAGGTGTTGTATTTTGTACCAGATGCGATGCATGCATGA
TTTGATGTCCTCCCTCAAACTGAAATCTATGCCTGATAACCTTAAGGTAT
TGTTTGATCGGTAACTGTTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1017:79682..80152+

>mRNA_P-littoralis_Contig1017.24.1 ID=mRNA_P-littoralis_Contig1017.24.1|Name=mRNA_P-littoralis_Contig1017.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig1017:79682..80152+ (Pylaiella littoralis U1_48)
ATGCTCCGTTACTCACAAGAAGGAAAAAAGGGTCGGTGCCGTAGCGAAAG
GGCGGGTGGTATTGAAATTCTTTCGGCGAAAACTTTCCGGAACACGTCGA
CCCAGTTTTTTGCGTTGGAGCTATCGTGCTTTGGACACGGGTCGAAGGGG
CCACGTGGTATCTTGCGCGACCTCGAAAAGGGACGCGTTATTTTAAACTT
GTTTTGTACCAAAAGGTGTTGTATTTTGTACCAGATGCGATGCATGCATG
ATTTGATGTCCTCCCTCAAACTGAAATCTATGCCTGATAACCTTAAGGTA
TTGTTTGATCGGTAA
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