mRNA_P-littoralis_Contig150.56.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig150.56.1
Unique NamemRNA_P-littoralis_Contig150.56.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig150.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig150contigP-littoralis_Contig150:231014..231477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size465
Hectar predicted targeting categorysignal anchor
Exons1
Cds size462
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789716.6495457-CDS-P-littoralis_Contig150:231013..2314751680789716.6495457-CDS-P-littoralis_Contig150:231013..231475Pylaiella littoralis U1_48CDSP-littoralis_Contig150 231014..231475 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig150.56.1prot_P-littoralis_Contig150.56.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig150 231014..231475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig150.56.1

>prot_P-littoralis_Contig150.56.1 ID=prot_P-littoralis_Contig150.56.1|Name=mRNA_P-littoralis_Contig150.56.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=154bp
KQKGTASIACSLGEPVFFFCCHPVVVVVVVSVAPVLLLVDGGYECGGNCS
TMRRWETGVATACRGAYEGAGHCLPVCCNESIRYYPVVWRAERDGRVVDR
QQKREGERSAVCFFIFSCSLPDDDAVSKKRQNVSRAVWSRYRRWRAPSPG
SVGQ
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mRNA from alignment at P-littoralis_Contig150:231014..231477+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig150.56.1 ID=mRNA_P-littoralis_Contig150.56.1|Name=mRNA_P-littoralis_Contig150.56.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=464bp|location=Sequence derived from alignment at P-littoralis_Contig150:231014..231477+ (Pylaiella littoralis U1_48)
AAGCAGAAAGGAACAGCTTCAATCGCCTGCTCCCTGGGAGAACCTGTGTT
CTTCTTCTGTTGTCATCCCGTTGTGGTCGTTGTCGTGGTGAGTGTGGCGC
CGGTGCTGCTGCTGGTGGATGGTGGATATGAGTGCGGTGGCAACTGCAGC
ACGATGCGTCGTTGGGAAACGGGTGTTGCAACAGCATGCCGCGGCGCGTA
TGAGGGGGCAGGGCATTGTTTACCGGTATGTTGTAACGAAAGTATTCGCT
ATTATCCAGTAGTTTGGAGAGCAGAGAGAGACGGTCGGGTTGTGGACCGG
CAGCAGAAAAGAGAAGGAGAGCGAAGTGCTGTTTGTTTTTTTATTTTTTC
GTGTTCGTTGCCTGATGATGACGCTGTCTCAAAAAAGCGACAAAATGTTA
GCCGCGCAGTCTGGAGCCGGTACAGGCGCTGGCGTGCTCCATCGCCAGGC
AGCGTGGGACAGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig150:231014..231477+

>mRNA_P-littoralis_Contig150.56.1 ID=mRNA_P-littoralis_Contig150.56.1|Name=mRNA_P-littoralis_Contig150.56.1|organism=Pylaiella littoralis U1_48|type=CDS|length=462bp|location=Sequence derived from alignment at P-littoralis_Contig150:231014..231477+ (Pylaiella littoralis U1_48)
AAGCAGAAAGGAACAGCTTCAATCGCCTGCTCCCTGGGAGAACCTGTGTT
CTTCTTCTGTTGTCATCCCGTTGTGGTCGTTGTCGTGGTGAGTGTGGCGC
CGGTGCTGCTGCTGGTGGATGGTGGATATGAGTGCGGTGGCAACTGCAGC
ACGATGCGTCGTTGGGAAACGGGTGTTGCAACAGCATGCCGCGGCGCGTA
TGAGGGGGCAGGGCATTGTTTACCGGTATGTTGTAACGAAAGTATTCGCT
ATTATCCAGTAGTTTGGAGAGCAGAGAGAGACGGTCGGGTTGTGGACCGG
CAGCAGAAAAGAGAAGGAGAGCGAAGTGCTGTTTGTTTTTTTATTTTTTC
GTGTTCGTTGCCTGATGATGACGCTGTCTCAAAAAAGCGACAAAATGTTA
GCCGCGCAGTCTGGAGCCGGTACAGGCGCTGGCGTGCTCCATCGCCAGGC
AGCGTGGGACAG
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