mRNA_P-littoralis_Contig1017.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1017.15.1
Unique NamemRNA_P-littoralis_Contig1017.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1017.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1017contigP-littoralis_Contig1017:36596..37317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size263
Hectar predicted targeting categorysignal peptide
Exons2
Cds size225
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789355.8112981-UTR-P-littoralis_Contig1017:36595..366321680789355.8112981-UTR-P-littoralis_Contig1017:36595..36632Pylaiella littoralis U1_48UTRP-littoralis_Contig1017 36596..36632 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789355.8217947-CDS-P-littoralis_Contig1017:36632..366411680789355.8217947-CDS-P-littoralis_Contig1017:36632..36641Pylaiella littoralis U1_48CDSP-littoralis_Contig1017 36633..36641 -
1680789355.833178-CDS-P-littoralis_Contig1017:37101..373171680789355.833178-CDS-P-littoralis_Contig1017:37101..37317Pylaiella littoralis U1_48CDSP-littoralis_Contig1017 37102..37317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1017.15.1prot_P-littoralis_Contig1017.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1017 36633..37317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1017.15.1

>prot_P-littoralis_Contig1017.15.1 ID=prot_P-littoralis_Contig1017.15.1|Name=mRNA_P-littoralis_Contig1017.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=75bp
LGIAALLCLRTITSSLLSFAIFISGKLSAESGQVDAHVLTAVFCHLHRFC
RKGFYFLVGVVRLWIPSYRRHHLV*
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mRNA from alignment at P-littoralis_Contig1017:36596..37317-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1017.15.1 ID=mRNA_P-littoralis_Contig1017.15.1|Name=mRNA_P-littoralis_Contig1017.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=722bp|location=Sequence derived from alignment at P-littoralis_Contig1017:36596..37317- (Pylaiella littoralis U1_48)
TTAGGGATAGCAGCACTCCTCTGTCTGCGGACTATTACGTCCAGTCTTCT
CAGTTTCGCCATTTTTATTTCAGGAAAACTTAGTGCCGAATCTGGACAGG
TCGACGCTCACGTCCTGACCGCTGTCTTTTGCCATTTGCATCGCTTTTGT
CGCAAAGGCTTCTATTTCCTCGTTGGTGTAGTTCGCCTCTGGATCCCATC
CTACCGTAGACATCACCTGTTTGTATCCAAACGACGATGAGCGACACACG
CCATTATCCCGTCAAAATGCCAGCAAACGGTGAAGTACGATAGCAGCGAC
TCGCACCCAAACTTCGTTATTCACGCACTTTGCACTAGGAAGGGGAAGAC
AATGTGTTTTCGAGGAAATCAAAATTACATTCACCTCGCGTGGAAGACGG
GTGGGGCATGATTAGTGTATTGGCGCGGTGAGAGAACTCCTTCCGTGTGA
AAGACCGGAATATATTTATGATCAGAAGAGGCGAATAAGCCGCCCTGTCG
ATTTTCCAGCTCCCAGCCAAGTACACCCTACAGAAAAACATTTTTAACAT
TATACTTCGTATTAACTATCCCCAACTTTATCAAACACGAGCCGTTCACC
TATAATATTAGGCAGGACCCACGGGGCACTATTTCAATGATATCCTCAGT
AAACAACCTGCAAGAAGATTACCCACCTCGTCTAGTGACATTTTAACGTT
ATCGCTTGATGCGACAGTCCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1017:36596..37317-

>mRNA_P-littoralis_Contig1017.15.1 ID=mRNA_P-littoralis_Contig1017.15.1|Name=mRNA_P-littoralis_Contig1017.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=225bp|location=Sequence derived from alignment at P-littoralis_Contig1017:36596..37317- (Pylaiella littoralis U1_48)
TTAGGGATAGCAGCACTCCTCTGTCTGCGGACTATTACGTCCAGTCTTCT
CAGTTTCGCCATTTTTATTTCAGGAAAACTTAGTGCCGAATCTGGACAGG
TCGACGCTCACGTCCTGACCGCTGTCTTTTGCCATTTGCATCGCTTTTGT
CGCAAAGGCTTCTATTTCCTCGTTGGTGTAGTTCGCCTCTGGATCCCATC
CTACCGTAGACATCACCTCGTCTAG
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