mRNA_P-littoralis_Contig15.83.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.83.1
Unique NamemRNA_P-littoralis_Contig15.83.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig15.83.1 vs. uniprot
Match: Q8QNM2_ESV1K (EsV-1-42 n=2 Tax=root TaxID=1 RepID=Q8QNM2_ESV1K)

HSP 1 Score: 261 bits (668), Expect = 4.300e-87
Identity = 128/169 (75.74%), Postives = 149/169 (88.17%), Query Frame = 1
Query:    1 MATYKAFNSMLSEFFCDLADTFDEYGVIADAKSMLDGLVSADGSTKLPMTTFVEVFQPHAELVMSKDPKLFEVCGIPMISDGGFDMAKEWVDLEEGNREAIWNYLQQLFLTGTTVLSMSGDVLQSIESLARGCMQKVEDGELTESQAQDPMIILQEIMKNPELMNALSS 507
            M TYKAFNSMLSEFF DLADTFDEY +I DAK MLDG++S D  + +PM TFV+VF+PHAEL+M+KDP LF+VC IPMI+ G FDMAKEW DLEE NREAIWNY+QQLFLTGTT+LSMSG++L SIE LA GCM+KVE+GELTESQAQDPMIILQEIM+N ELM+AL++
Sbjct:    1 MTTYKAFNSMLSEFFRDLADTFDEYTIIMDAKVMLDGVISTDDCSTVPMETFVDVFKPHAELIMAKDPSLFDVCEIPMITGGDFDMAKEWKDLEEDNREAIWNYIQQLFLTGTTILSMSGELLNSIEQLANGCMKKVENGELTESQAQDPMIILQEIMQNTELMSALNT 169          
BLAST of mRNA_P-littoralis_Contig15.83.1 vs. uniprot
Match: A0A6H5KJD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD3_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 5.490e-68
Identity = 112/154 (72.73%), Postives = 133/154 (86.36%), Query Frame = 1
Query:   16 AFNSMLSEFFCDLADTFDEYGVIADAKSMLDGLVSADGSTKLPMTTFVEVFQPHAELVMSKDPKLFEVCGIPMISDGGFDMAKEWVDLEEGNREAIWNYLQQLFLTGTTVLSMSGDVLQSIESLARGCMQKVEDGELTESQAQDPMIILQEIMK 477
            AFNSMLSEFFCDLADTFDEY VI DAK+ML+GL++AD  T++PM TFVEVF+PHA+L+M+KDPKLF+VC I +I+ G FDMAKEW  LE+ NREAIWNY+QQLF  GTT+LSMSG VL SI+SLA+GCM+KVE+GELTESQAQDPM    E +K
Sbjct:  269 AFNSMLSEFFCDLADTFDEYTVITDAKTMLEGLMAADECTEIPMGTFVEVFKPHADLIMTKDPKLFDVCEILLITGGEFDMAKEWTALEDDNREAIWNYIQQLFPAGTTILSMSGKVLSSIQSLAQGCMKKVENGELTESQAQDPMAETIETLK 422          
BLAST of mRNA_P-littoralis_Contig15.83.1 vs. uniprot
Match: B5LWK6_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWK6_9PHYC)

HSP 1 Score: 124 bits (312), Expect = 4.460e-33
Identity = 63/169 (37.28%), Postives = 100/169 (59.17%), Query Frame = 1
Query:    4 ATYKAFNSMLSEFFCDLADTFDEYGVIADAKSMLDGLVSADGSTKLPMTTFVEVFQPHAELVMSKDPKLFEVCGIPMISDGGFDMAKEWVDLEEGNREAIWNYLQQLFLTGTTVLSMSGDVLQSIESLARGCMQKVEDGELTESQAQDPMIILQEIMKNPELMNALSST 510
            + Y +FN++L+EF  DL+ TF EY  +ADAK   + L+  D  +KLP+  F     P    V  +DP+LFE   IPM      D+ K +   ++  + AIW Y+QQL    TTV ++   ++ +IE +    + K++ GE+TE +AQ+PM I++E+ KNPE++ A + T
Sbjct:    3 SAYSSFNNLLAEFLTDLSMTFSEYPELADAKDQFNNLLHLDSKSKLPLEAFHTAISPFGAQVTGRDPELFEKIKIPMTEK--VDIGKCFRTSDDATKNAIWEYIQQLTALSTTVNTLPPSMMANIEKMTDLTLSKIKSGEITEKEAQNPMFIMKEMQKNPEILEAFTKT 169          
BLAST of mRNA_P-littoralis_Contig15.83.1 vs. uniprot
Match: A0A2E0RC34_9RHOB (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A2E0RC34_9RHOB)

HSP 1 Score: 79.3 bits (194), Expect = 1.520e-15
Identity = 53/153 (34.64%), Postives = 78/153 (50.98%), Query Frame = 1
Query:    1 MATYKAFNSMLSEFFCDLADTFDEYGVIADAKSMLDGLVSADGSTKLPMTTFVEVFQPHAELVMSKDPKLFEVCGIPMISDGGFDMAKEWVDLEEGNREAIWNYLQQLFLTGTTVLSMSGDVLQSIESLARGCMQKVE-DG-ELTESQAQDPM 453
            M +  AFN M+ +F  +L  TF E   +    +  + + S +G  KL +T F++   PH E V S+D   F      M      ++   W    EG R AIW Y+Q LF+ GTT+ S+  + L  IE++A+ C  K+E DG EL E+Q    M
Sbjct:    1 MTSVTAFNDMMGQFLTELHKTFPEEKGVKKYIAAFEMMRSTNG--KLIVTGFMDSVSPHIEKVNSRDESFFLENANDMEFLKDVNLKNLWPKASEGTRNAIWQYIQTLFMLGTTITSIPPETLSMIENVAKQCADKMENDGDELDETQLMKSM 151          
BLAST of mRNA_P-littoralis_Contig15.83.1 vs. uniprot
Match: E5EQD8_9PHYC (Uncharacterized protein n=1 Tax=Micromonas sp. RCC1109 virus MpV1 TaxID=880161 RepID=E5EQD8_9PHYC)

HSP 1 Score: 76.6 bits (187), Expect = 1.640e-14
Identity = 46/143 (32.17%), Postives = 76/143 (53.15%), Query Frame = 1
Query:    1 MATYKAFNSMLSEFFCDLADTFDEYGVIADAKSMLDGLVSADGSTKLPMTTFVEVFQPHAELVMSKDPK--LFEVCGIPMISDGGFDMAKEWVDLEEGNREAIWNYLQQLFLTGTTVLSMSGDVLQSIESLARGCMQKVEDGE 423
            MA+  AFN M+ +F  +L  TF E   I    +  D L S++   +L +  +++   P+AE + +KD    L E+  I  + D   ++   W  +    R A W YLQ L++ GTT+ S+  D L+ IE +A+ C  K++DG+
Sbjct:    1 MASVTAFNDMMGQFLVELHKTFPEEKGIKKMMTSFDVLKSSN--PRLVVDAYMKGVSPYAEKISAKDETFLLKEIETIEFLKD--LNIKSYWERMSANTRSATWQYLQTLYMLGTTITSIPDDTLKMIEGIAKECADKMQDGD 139          
BLAST of mRNA_P-littoralis_Contig15.83.1 vs. uniprot
Match: A0A7S6SXR1_9PHYC (Uncharacterized protein n=1 Tax=Bathycoccus sp. RCC716 virus 3 TaxID=2530040 RepID=A0A7S6SXR1_9PHYC)

HSP 1 Score: 75.9 bits (185), Expect = 3.470e-14
Identity = 46/148 (31.08%), Postives = 75/148 (50.68%), Query Frame = 1
Query:    1 MATYKAFNSMLSEFFCDLADTFDEYGVIADAKSMLDGLVSADGSTKLPMTTFVEVFQPHAELVMSKDPKLFEVCGIPMISDGGFDMAKEWVDLEEGNREAIWNYLQQLFLTGTTVLSMSGDVLQSIESLARGCMQKV---EDGELTES 435
            MA+  AFN M+ +F  +L  TF E   +    S  D  +  + + +L +  F+    P+ E + +KD   F      +    G ++ K W    E  + AIW Y+Q L++ GTT+ S+  D L  IE++A+ C  K+   E+GEL E+
Sbjct:    1 MASVTAFNDMMGQFLVELHKTFPEEKGLKKCLSAFD--LMKEANPRLVVDGFMNGVAPYTEQISAKDDSFFIKESKNLDFMKGVNLEKHWGSCSENTKNAIWQYVQTLYMLGTTIKSIPEDTLSMIETVAKECADKLGSGENGELDEA 146          
BLAST of mRNA_P-littoralis_Contig15.83.1 vs. uniprot
Match: G9E601_MPSP1 (Uncharacterized protein n=1 Tax=Micromonas pusilla virus SP1 TaxID=373996 RepID=G9E601_MPSP1)

HSP 1 Score: 75.5 bits (184), Expect = 4.660e-14
Identity = 46/142 (32.39%), Postives = 75/142 (52.82%), Query Frame = 1
Query:    1 MATYKAFNSMLSEFFCDLADTFDEYGVIADAKSMLDGLVSADGSTKLPMTTFVEVFQPHAELVMSKDPK--LFEVCGIPMISDGGFDMAKEWVDLEEGNREAIWNYLQQLFLTGTTVLSMSGDVLQSIESLARGCMQKVEDG 420
            MA+  AFN M+ +F  +L  TF +   I    +  D L SA+   +L +  F+    P+++ + SKD    L E+  I M+ D   D+   W  + +  ++  W YLQ L++ GTT+ S+S D L  IE +A+G   ++E G
Sbjct:    1 MASVTAFNDMMGQFLVELHKTFPDEKGIKKMLTSFDLLKSAN--PRLVVDGFMSGVSPYSDKISSKDETFLLKEIETIDMLKD--LDIKSYWNRMSQNTKDVTWQYLQTLYMLGTTITSISADTLSQIEEIAKGVASQMEGG 138          
BLAST of mRNA_P-littoralis_Contig15.83.1 vs. uniprot
Match: A0A424TU90_9ALTE (Uncharacterized protein n=1 Tax=Alteromonadaceae bacterium TMED7 TaxID=1986650 RepID=A0A424TU90_9ALTE)

HSP 1 Score: 73.6 bits (179), Expect = 2.480e-13
Identity = 45/149 (30.20%), Postives = 75/149 (50.34%), Query Frame = 1
Query:    1 MATYKAFNSMLSEFFCDLADTFDEYGVIADAKSMLDGLVSADGSTKLPMTTFVEVFQPHAELVMSKDPKLF--EVCGIPMISDGGFDMAKEWVDLEEGNREAIWNYLQQLFLTGTTVLSMSGDVLQSIESLARGCMQKVE--DGELTES 435
            M++  AFN M+ +F  +L  TF E   I    S  +  +    + +L +  F+    P AE + SKD   F  E   +  + D    + ++W  +    +EA+W Y+Q L++ GTT+ S+  D L  IE +A+ C  K+E  DG + E+
Sbjct:    1 MSSVNAFNDMMGQFLAELHKTFPEEKGIKKCMSGFE--IMRTSNPRLVVDGFMASVTPFAEQISSKDDAFFLNEAKNLDFLKD--VKIEEKWASISSQTKEAVWQYVQTLYMLGTTISSIPADTLSMIEKVAKECADKLEGQDGGIDEA 145          
BLAST of mRNA_P-littoralis_Contig15.83.1 vs. uniprot
Match: G8DDD4_9PHYC (Uncharacterized protein n=1 Tax=Micromonas pusilla virus PL1 TaxID=373997 RepID=G8DDD4_9PHYC)

HSP 1 Score: 73.6 bits (179), Expect = 2.480e-13
Identity = 45/143 (31.47%), Postives = 75/143 (52.45%), Query Frame = 1
Query:    1 MATYKAFNSMLSEFFCDLADTFDEYGVIADAKSMLDGLVSADGSTKLPMTTFVEVFQPHAELVMSKDPK--LFEVCGIPMISDGGFDMAKEWVDLEEGNREAIWNYLQQLFLTGTTVLSMSGDVLQSIESLARGCMQKVEDGE 423
            MA+  AFN M+S+F  +L  TF +   I    +  D L S +   +L +  F++   P+A+ + +KD    L E+  I  + D   ++   W  +    R+  W YLQ L++ GTT+ S+  D L  IE +A+ C  K++DG+
Sbjct:    1 MASVTAFNDMMSQFLVELHKTFPDEKGIKKMLTSFDLLKSTN--PRLVVDAFMKGVSPYADKISTKDETFLLTEIETIDFLKD--LNIKGYWERMTTNTRDVTWQYLQTLYMLGTTITSIPEDTLSMIEGIAKECADKMQDGD 139          
BLAST of mRNA_P-littoralis_Contig15.83.1 vs. uniprot
Match: E5ESA4_9PHYC (Uncharacterized protein n=3 Tax=unclassified Prasinovirus TaxID=880158 RepID=E5ESA4_9PHYC)

HSP 1 Score: 73.2 bits (178), Expect = 3.480e-13
Identity = 44/141 (31.21%), Postives = 73/141 (51.77%), Query Frame = 1
Query:    1 MATYKAFNSMLSEFFCDLADTFDEYGVIADAKSMLDGLVSADGSTKLPMTTFVEVFQPHAELVMSKDPKLFEVCGIPMISDGGFDMAKEWVDLEEGNREAIWNYLQQLFLTGTTVLSMSGDVLQSIESLARGCMQKV-EDG 420
            M +  AFN M+ +F  +L  TF E   +    S  D + +++   +L +  F++   P+A+ + SKD   F      +    G ++ K W    E  + AIW Y+Q L++ GTT+ S+  D L  IE++A+ C  K+ EDG
Sbjct:    1 MTSVTAFNDMMGQFLVELHKTFPEEKGLKKCLSAFDLMKASN--PRLVVDGFMQGVTPYADKISSKDESFFIEESKNLDFMKGVNLEKHWGTASENTKSAIWQYVQTLYMLGTTISSIPEDTLSMIETVAKQCADKMGEDG 139          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
Q8QNM2_ESV1K4.300e-8775.74EsV-1-42 n=2 Tax=root TaxID=1 RepID=Q8QNM2_ESV1K[more]
A0A6H5KJD3_9PHAE5.490e-6872.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B5LWK6_9PHYC4.460e-3337.28Uncharacterized protein n=1 Tax=Feldmannia species... [more]
A0A2E0RC34_9RHOB1.520e-1534.64Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
E5EQD8_9PHYC1.640e-1432.17Uncharacterized protein n=1 Tax=Micromonas sp. RCC... [more]
A0A7S6SXR1_9PHYC3.470e-1431.08Uncharacterized protein n=1 Tax=Bathycoccus sp. RC... [more]
G9E601_MPSP14.660e-1432.39Uncharacterized protein n=1 Tax=Micromonas pusilla... [more]
A0A424TU90_9ALTE2.480e-1330.20Uncharacterized protein n=1 Tax=Alteromonadaceae b... [more]
G8DDD4_9PHYC2.480e-1331.47Uncharacterized protein n=1 Tax=Micromonas pusilla... [more]
E5ESA4_9PHYC3.480e-1331.21Uncharacterized protein n=3 Tax=unclassified Prasi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:191585..192103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog654926.Q8QNM2_ESV1K
Model size519
Max annot lvl10239|Viruses
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.05e-88
EggNOG OGs4QFDP@10239|Viruses,4QX2X@35237|dsDNA viruses no RNA stage
Ec32 ortholog descriptionEsV-1-42
Ec32 orthologEc-06_006370.1
Cds size519
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789711.960871-CDS-P-littoralis_Contig15:191584..1921031680789711.960871-CDS-P-littoralis_Contig15:191584..192103Pylaiella littoralis U1_48CDSP-littoralis_Contig15 191585..192103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.83.1prot_P-littoralis_Contig15.83.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 191585..192103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.83.1

>prot_P-littoralis_Contig15.83.1 ID=prot_P-littoralis_Contig15.83.1|Name=mRNA_P-littoralis_Contig15.83.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=173bp
MATYKAFNSMLSEFFCDLADTFDEYGVIADAKSMLDGLVSADGSTKLPMT
TFVEVFQPHAELVMSKDPKLFEVCGIPMISDGGFDMAKEWVDLEEGNREA
IWNYLQQLFLTGTTVLSMSGDVLQSIESLARGCMQKVEDGELTESQAQDP
MIILQEIMKNPELMNALSSTNQ*
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mRNA from alignment at P-littoralis_Contig15:191585..192103-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.83.1 ID=mRNA_P-littoralis_Contig15.83.1|Name=mRNA_P-littoralis_Contig15.83.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=519bp|location=Sequence derived from alignment at P-littoralis_Contig15:191585..192103- (Pylaiella littoralis U1_48)
ATGGCGACATACAAGGCATTCAACTCCATGCTGTCGGAATTTTTCTGCGA CCTGGCCGACACCTTCGACGAGTACGGAGTCATTGCAGACGCCAAGAGCA TGCTCGATGGGCTCGTATCCGCCGACGGGTCGACCAAGCTTCCGATGACC ACCTTCGTTGAGGTTTTTCAGCCACACGCCGAGTTGGTAATGTCCAAGGA TCCGAAGCTCTTTGAAGTCTGTGGCATACCCATGATATCGGACGGAGGGT TTGATATGGCGAAAGAGTGGGTCGACCTAGAAGAGGGCAACAGGGAGGCC ATCTGGAACTACCTCCAACAGCTCTTCCTGACCGGAACGACGGTTCTGTC CATGTCCGGCGACGTGCTGCAATCAATCGAAAGCCTCGCCCGCGGTTGCA TGCAGAAGGTGGAAGACGGGGAGCTCACCGAGAGCCAGGCCCAGGACCCC ATGATCATCCTGCAAGAGATCATGAAGAACCCCGAACTGATGAACGCGTT GTCTTCAACAAATCAGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:191585..192103-

>mRNA_P-littoralis_Contig15.83.1 ID=mRNA_P-littoralis_Contig15.83.1|Name=mRNA_P-littoralis_Contig15.83.1|organism=Pylaiella littoralis U1_48|type=CDS|length=519bp|location=Sequence derived from alignment at P-littoralis_Contig15:191585..192103- (Pylaiella littoralis U1_48)
ATGGCGACATACAAGGCATTCAACTCCATGCTGTCGGAATTTTTCTGCGA
CCTGGCCGACACCTTCGACGAGTACGGAGTCATTGCAGACGCCAAGAGCA
TGCTCGATGGGCTCGTATCCGCCGACGGGTCGACCAAGCTTCCGATGACC
ACCTTCGTTGAGGTTTTTCAGCCACACGCCGAGTTGGTAATGTCCAAGGA
TCCGAAGCTCTTTGAAGTCTGTGGCATACCCATGATATCGGACGGAGGGT
TTGATATGGCGAAAGAGTGGGTCGACCTAGAAGAGGGCAACAGGGAGGCC
ATCTGGAACTACCTCCAACAGCTCTTCCTGACCGGAACGACGGTTCTGTC
CATGTCCGGCGACGTGCTGCAATCAATCGAAAGCCTCGCCCGCGGTTGCA
TGCAGAAGGTGGAAGACGGGGAGCTCACCGAGAGCCAGGCCCAGGACCCC
ATGATCATCCTGCAAGAGATCATGAAGAACCCCGAACTGATGAACGCGTT
GTCTTCAACAAATCAGTAG
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