mRNA_P-littoralis_Contig15.79.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.79.1
Unique NamemRNA_P-littoralis_Contig15.79.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.79.1 vs. uniprot
Match: Q8QKV9_ESV1K (EsV-1-51 n=2 Tax=root TaxID=1 RepID=Q8QKV9_ESV1K)

HSP 1 Score: 130 bits (326), Expect = 1.390e-37
Identity = 62/90 (68.89%), Postives = 78/90 (86.67%), Query Frame = 1 
Query:    1 MLQFVLAVAGYLFLVTRFFDRGVAPIGKRLQRNLIPVPKKSIEMVTLFASMLYPMLAFLKARESGWQAYESRGALAVIAGVVIGMISNAD 270
            M+QFVLAVAGYL LV  FFDRGVAP+GKRLQ+N+IP+PK SI+ V LFASMLYPM+AF++AR+S W   ES+GA+AV+AGV +GMIS+ +
Sbjct:    1 MIQFVLAVAGYLLLVRAFFDRGVAPVGKRLQKNIIPLPKDSIDAVCLFASMLYPMMAFVQARKSDWSLGESKGAMAVVAGVCLGMISSVE 90
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BLAST of mRNA_P-littoralis_Contig15.79.1 vs. uniprot
Match: Q6XM48_9PHYC (FirrV-1-A39 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM48_9PHYC)

HSP 1 Score: 50.4 bits (119), Expect = 3.850e-6
Identity = 26/72 (36.11%), Postives = 41/72 (56.94%), Query Frame = 1 
Query:   55 FDRGVAPIGKRLQRNLIPVPKKSIEMVTLFASMLYPMLAFLKARESGWQAYESRGALAVIAGVVIGMISNAD 270
            FD  + P   ++  N +  P K IE   L  + L+P+ + L AR SG+Q  +S   LA+I GV++GMI + +
Sbjct:   19 FDAYLKPALSKMSSNTVKYPSKLIEGWLLVTASLFPLNSVLMARRSGFQLKQSMSFLALILGVILGMIVDVN 90
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QKV9_ESV1K1.390e-3768.89EsV-1-51 n=2 Tax=root TaxID=1 RepID=Q8QKV9_ESV1K[more]
Q6XM48_9PHYC3.850e-636.11FirrV-1-A39 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:189192..189464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size273
Hectar predicted targeting categorysignal peptide
Exons1
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789711.8549654-CDS-P-littoralis_Contig15:189191..1894641680789711.8549654-CDS-P-littoralis_Contig15:189191..189464Pylaiella littoralis U1_48CDSP-littoralis_Contig15 189192..189464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.79.1prot_P-littoralis_Contig15.79.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 189192..189464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.79.1

>prot_P-littoralis_Contig15.79.1 ID=prot_P-littoralis_Contig15.79.1|Name=mRNA_P-littoralis_Contig15.79.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=91bp
MLQFVLAVAGYLFLVTRFFDRGVAPIGKRLQRNLIPVPKKSIEMVTLFAS
MLYPMLAFLKARESGWQAYESRGALAVIAGVVIGMISNAD*
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mRNA from alignment at P-littoralis_Contig15:189192..189464-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.79.1 ID=mRNA_P-littoralis_Contig15.79.1|Name=mRNA_P-littoralis_Contig15.79.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig15:189192..189464- (Pylaiella littoralis U1_48)
ATGCTTCAATTTGTTCTTGCGGTCGCCGGCTACCTGTTTCTAGTAACCCG
GTTCTTTGATCGGGGCGTGGCTCCGATCGGGAAACGCCTGCAACGAAACC
TGATCCCGGTCCCGAAGAAATCGATCGAGATGGTCACCCTTTTTGCATCC
ATGCTTTATCCCATGCTGGCGTTCTTGAAAGCCCGGGAGTCGGGCTGGCA
GGCTTACGAATCGAGGGGAGCCTTGGCCGTCATCGCTGGCGTCGTCATCG
GGATGATTTCCAACGCTGATTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:189192..189464-

>mRNA_P-littoralis_Contig15.79.1 ID=mRNA_P-littoralis_Contig15.79.1|Name=mRNA_P-littoralis_Contig15.79.1|organism=Pylaiella littoralis U1_48|type=CDS|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig15:189192..189464- (Pylaiella littoralis U1_48)
ATGCTTCAATTTGTTCTTGCGGTCGCCGGCTACCTGTTTCTAGTAACCCG
GTTCTTTGATCGGGGCGTGGCTCCGATCGGGAAACGCCTGCAACGAAACC
TGATCCCGGTCCCGAAGAAATCGATCGAGATGGTCACCCTTTTTGCATCC
ATGCTTTATCCCATGCTGGCGTTCTTGAAAGCCCGGGAGTCGGGCTGGCA
GGCTTACGAATCGAGGGGAGCCTTGGCCGTCATCGCTGGCGTCGTCATCG
GGATGATTTCCAACGCTGATTGA
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