mRNA_P-littoralis_Contig15.49.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.49.1
Unique NamemRNA_P-littoralis_Contig15.49.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.49.1 vs. uniprot
Match: Q8QKV5_ESV1K (EsV-1-97 n=2 Tax=root TaxID=1 RepID=Q8QKV5_ESV1K)

HSP 1 Score: 338 bits (866), Expect = 2.580e-112
Identity = 195/337 (57.86%), Postives = 239/337 (70.92%), Query Frame = 1 
Query:    1 MSSAQQGTTFVLAGVAVCLLVYVVQQELRGPRDYPRVAGAVGAVRNALGASKGVDCAKIKPGNPNWARCAQGSAIGRVPTQKASSVVKNSTIDFTKDSLQNQGLGAGRLQDDFVHQQFDTSLGL---GGMRIDRSNLKNNAFFSQGTENPTHLVTSGISADSAAAFPFSRKS-DYEAGEAAVISRTNSGKVPGAEPAPVGSGMSLVALRRQPKRSVVARDADGGGRGPSRAQVEKKLGVAPFDENGAVANPFLGGSYGSSAGLALTDAYDPPALGAGLSLTKAFQSNARSLGAAVSPVKSA-VGVSPVEISEATAVLDNVNIVQSTTGGNLNIGIRP 996
            MSS Q+GTT +LA VAVCLL+YV++QE RGP  YPRVAG VGA++ ALG+    DC+KI P + +WARCAQGSA+GRVPT+ AS+VV N+++DF  DSL+NQGLG GRLQDDFVH Q+ ++LG    GGMRID+S+LKNNAFFS GT+N T LV +GIS++ AAAFPFSRKS D   G       + SG VPG EP  VG GM L   +++ + SV      GGGR  SRAQV KKLGVAPF++ GA  NPF G      AGL +++A+D   LG G  L +A+ S    LGAAVSP  S+ VGVSP EI+ AT  L  VNIVQST GGN++  IRP
Sbjct:    1 MSSTQEGTTLILASVAVCLLIYVMKQEFRGPHRYPRVAGVVGAIKGALGSRGATDCSKINPSHADWARCAQGSAMGRVPTKDASAVVNNTSLDFASDSLKNQGLGTGRLQDDFVHDQYSSNLGAPRPGGMRIDKSSLKNNAFFSSGTQNATKLVGAGISSEGAAAFPFSRKSGDKREG---YEKTSASGNVPGTEP--VGMGMKLAHFKKKARASVAT---GGGGRSASRAQVNKKLGVAPFEQEGAEFNPFSGNKASLGAGLKISEAFDAKNLGMGSGLKEAYGS----LGAAVSPFSSSDVGVSPDEIAAATTALKEVNIVQSTGGGNIDRFIRP 325
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QKV5_ESV1K2.580e-11257.86EsV-1-97 n=2 Tax=root TaxID=1 RepID=Q8QKV5_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:137633..138631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size999
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionEsV-1-97
Ec32 orthologEc-06_005840.1
Cds size999
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789710.770037-CDS-P-littoralis_Contig15:137632..1386311680789710.770037-CDS-P-littoralis_Contig15:137632..138631Pylaiella littoralis U1_48CDSP-littoralis_Contig15 137633..138631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.49.1prot_P-littoralis_Contig15.49.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 137633..138631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.49.1

>prot_P-littoralis_Contig15.49.1 ID=prot_P-littoralis_Contig15.49.1|Name=mRNA_P-littoralis_Contig15.49.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=333bp
MSSAQQGTTFVLAGVAVCLLVYVVQQELRGPRDYPRVAGAVGAVRNALGA
SKGVDCAKIKPGNPNWARCAQGSAIGRVPTQKASSVVKNSTIDFTKDSLQ
NQGLGAGRLQDDFVHQQFDTSLGLGGMRIDRSNLKNNAFFSQGTENPTHL
VTSGISADSAAAFPFSRKSDYEAGEAAVISRTNSGKVPGAEPAPVGSGMS
LVALRRQPKRSVVARDADGGGRGPSRAQVEKKLGVAPFDENGAVANPFLG
GSYGSSAGLALTDAYDPPALGAGLSLTKAFQSNARSLGAAVSPVKSAVGV
SPVEISEATAVLDNVNIVQSTTGGNLNIGIRP*
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mRNA from alignment at P-littoralis_Contig15:137633..138631+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.49.1 ID=mRNA_P-littoralis_Contig15.49.1|Name=mRNA_P-littoralis_Contig15.49.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=999bp|location=Sequence derived from alignment at P-littoralis_Contig15:137633..138631+ (Pylaiella littoralis U1_48)
ATGTCGTCGGCTCAGCAAGGCACGACGTTTGTCCTCGCCGGCGTCGCCGT
GTGTCTCTTGGTCTACGTGGTACAGCAAGAACTCCGGGGTCCCCGGGACT
ACCCGCGCGTGGCTGGAGCGGTGGGCGCCGTGCGGAATGCCCTCGGCGCG
AGCAAGGGCGTGGACTGTGCCAAGATAAAGCCTGGCAACCCGAACTGGGC
CCGGTGCGCCCAAGGATCCGCAATCGGTCGCGTGCCGACGCAAAAGGCCT
CGAGTGTCGTAAAAAACAGCACGATCGACTTCACGAAGGACTCGTTGCAG
AACCAGGGACTCGGCGCGGGGCGTCTCCAGGATGATTTCGTGCACCAACA
GTTCGACACGAGCCTGGGGCTGGGGGGGATGAGAATCGACCGATCGAACC
TCAAGAACAACGCGTTTTTCTCACAGGGCACGGAAAACCCGACCCATCTC
GTCACATCAGGAATCAGCGCGGACAGCGCGGCGGCATTCCCCTTCTCGCG
CAAGAGTGATTACGAAGCCGGCGAGGCCGCCGTCATCTCACGGACGAACT
CGGGGAAGGTGCCCGGCGCCGAACCAGCACCGGTTGGTTCGGGGATGAGC
CTGGTGGCTCTCAGGCGGCAGCCCAAGCGCTCCGTCGTGGCGCGAGACGC
GGATGGTGGCGGGAGAGGGCCGTCTCGAGCACAGGTTGAGAAGAAGCTCG
GCGTGGCGCCCTTCGACGAGAACGGCGCGGTGGCCAACCCGTTCCTGGGC
GGGTCGTACGGCTCGAGCGCGGGCCTCGCGCTGACCGACGCCTACGATCC
TCCGGCGCTCGGGGCGGGGTTGAGCCTCACGAAGGCCTTTCAGAGCAACG
CCAGGAGCCTCGGCGCCGCCGTGTCTCCCGTGAAATCTGCCGTGGGTGTG
TCCCCGGTCGAAATATCCGAGGCGACCGCGGTACTCGACAACGTGAACAT
CGTCCAGAGCACGACCGGGGGGAACCTAAACATCGGAATCCGGCCATAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:137633..138631+

>mRNA_P-littoralis_Contig15.49.1 ID=mRNA_P-littoralis_Contig15.49.1|Name=mRNA_P-littoralis_Contig15.49.1|organism=Pylaiella littoralis U1_48|type=CDS|length=999bp|location=Sequence derived from alignment at P-littoralis_Contig15:137633..138631+ (Pylaiella littoralis U1_48)
ATGTCGTCGGCTCAGCAAGGCACGACGTTTGTCCTCGCCGGCGTCGCCGT
GTGTCTCTTGGTCTACGTGGTACAGCAAGAACTCCGGGGTCCCCGGGACT
ACCCGCGCGTGGCTGGAGCGGTGGGCGCCGTGCGGAATGCCCTCGGCGCG
AGCAAGGGCGTGGACTGTGCCAAGATAAAGCCTGGCAACCCGAACTGGGC
CCGGTGCGCCCAAGGATCCGCAATCGGTCGCGTGCCGACGCAAAAGGCCT
CGAGTGTCGTAAAAAACAGCACGATCGACTTCACGAAGGACTCGTTGCAG
AACCAGGGACTCGGCGCGGGGCGTCTCCAGGATGATTTCGTGCACCAACA
GTTCGACACGAGCCTGGGGCTGGGGGGGATGAGAATCGACCGATCGAACC
TCAAGAACAACGCGTTTTTCTCACAGGGCACGGAAAACCCGACCCATCTC
GTCACATCAGGAATCAGCGCGGACAGCGCGGCGGCATTCCCCTTCTCGCG
CAAGAGTGATTACGAAGCCGGCGAGGCCGCCGTCATCTCACGGACGAACT
CGGGGAAGGTGCCCGGCGCCGAACCAGCACCGGTTGGTTCGGGGATGAGC
CTGGTGGCTCTCAGGCGGCAGCCCAAGCGCTCCGTCGTGGCGCGAGACGC
GGATGGTGGCGGGAGAGGGCCGTCTCGAGCACAGGTTGAGAAGAAGCTCG
GCGTGGCGCCCTTCGACGAGAACGGCGCGGTGGCCAACCCGTTCCTGGGC
GGGTCGTACGGCTCGAGCGCGGGCCTCGCGCTGACCGACGCCTACGATCC
TCCGGCGCTCGGGGCGGGGTTGAGCCTCACGAAGGCCTTTCAGAGCAACG
CCAGGAGCCTCGGCGCCGCCGTGTCTCCCGTGAAATCTGCCGTGGGTGTG
TCCCCGGTCGAAATATCCGAGGCGACCGCGGTACTCGACAACGTGAACAT
CGTCCAGAGCACGACCGGGGGGAACCTAAACATCGGAATCCGGCCATAG
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