mRNA_P-littoralis_Contig1015.1.12 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1015.1.12 vs. uniprot
Match: D8LEF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF4_ECTSI) HSP 1 Score: 985 bits (2546), Expect = 4.620e-310 Identity = 1004/2004 (50.10%), Postives = 1137/2004 (56.74%), Query Frame = 2
Query: 26 MEEGGPCVPT-DGVNRSTDRPNLHTDSFRDDIQAIGRAVERLRDGFASAGTDTSSPKPTPVHDSARWSGLLSSSTLGSAAGEGVDVAGRQLEEVPRQQQRRRSGDPNNGSPPSPEAGRRVQQATSTSPNRELLPARGRGSERLAEGATNVEASVLDQTNASNGRLSLRELRSANEARRFYSDERAKATAEGTTTGDQEDE-VAAAPAGAGE----GALVPDEEKGLVNTGSRSSSXXXXXXXXXXXXXXXXXARGDSGRPDSSSGEXXXVRTASAAAATGLSSGKNEQDTLPRTRTQKGDLLRTRSDMSPPLLVAVDGRTAAPAAGSESSLFSLPLMGRSRSPSMRRSGGRGRNNNRGEFSVEEVGSSAASAVGXXXXXXXXXGRKTGAVGAVAGEGVKPPTESGSLFELRDALRSREKELLRLKRDVAVVATNAGGFKHLAASLGSSADMNNDEMRSFAFGHRXXXXXXXXPAYSEGVGGGTEDSNRPGSKSSPSGRSDLDSSSGFEGHGRGGAG----GKPLVAVEQKYAAGELLPWRRPDE---PATASSNFATAPPFR-TGGELSSPRQMXXXXXXRIARRQHQPSTSAISQGTDAALAVSGSPLVASAHEGLRQMRAVLEQRALEAERTKGDAKNMASFGIGLYTESLNDVSARLRRSERKRNTQVAELAAARAEADRLKSELSSVLARHRVREKAAXXXXXXXXXXXXXXXXXXXXXXXXXLLEPAQQQQLRKRDAIIGRLRDKLEAASGELSEEQAATASLRARLEASEKEARRARENATAAEEEAGVXXXXXXTARAAQXXXXXXXXXXXXXXXXXXXXXXXXXRSAEEEGRRRAREAQRARESLKAEKEGTARLALELEAAVRERTQXXXXXXXXXXXXXXXRVDLSSVSTTAEE------IQRERDTAQESLRLAVAELANITAALVLAREGQEAERGRSDRESKRAAALEEELVASEARRKVQEEEISLVRKQVSRLDAKIEGDMSREKAKSDATARASVAGAEREANLLRASLRETEAQLLASXXXXXXXXXXXXXXASLKTELVVARDTAEKAERALATAXXXXRAAEAGADAKDRQAERAAEAARQDKDTLKRGLVASQTACAELRAERLRLLSELEQAASXXXXXXXXXXXXXXPGCDSCFSSPTGGGDVGASGLRDGGGXXXXXXXXXXAHTDLEGRLALALAEAAEARAEVQRLKRKLTAC-DRQ---------YKMAAAVQVSTAQGLSEGADDDGFFLGEGRRVRRERLQEGLRESCRVMNRVATALSAAADARTGGTRSGXXXXXXXXXLDDPRWIAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAFSVDSCHSGVGEGDGDRYHHHDDADSFGDTSDEGSLRNDAQRVVSRADVREVSTHLRFEAARLLGVREDERKVAEGKVARLRQDLRDSEGREAEITARLEESRELSREQTGFVEGVWKERHRLESQLAARREEVERLRAGEDAARAAATVLDGKVEDLSAALKQEQARAKREAEAAVAAEARDAMEALRKQLDDLRKEGEFQRLRAKYEKAKGRIVALEELVAASRRVSAQARREFQGALGALKMSQELLLRIHRQRQGRNNANIDSIP---------APPVSDYHHGAKAPPKPITGGAPAQXXXXXXXXXPEGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXEREGERRAATETTP-SPDAHVHELASQASKLRGMSRDLKRLLQVAAGEVQGALEDTRDSLGVAAAAATATAVGTQTG-GAVAATRESVDALEEKLREVKRTAGELETERSRLGGELDEALGELSRVQGLLRDKTAEAEELEARVARLEAEGREAREGASAA-DDRLAEAEATEAQLSDTRARLDAALAVQGELRSRCAELSLASGAFAAEVAKQKEDRARS------------------------AAAEAAAERGRLERMLAATREEAQEVDSDVAQVLDALSASEKERRRLEGELERQTK 5839
MEE P VP+ D R + DSF+DDIQAIGRAVERLRDGFA GTD+SSP P P HDSA+W G LSSS L S G D +GR SGD G P R + RELLPAR S AEG T SVL++T S+GRLSLRELRSA+++R YSDERA+ + GDQ VAAA G GE G V D+E GL N G S S D G P S G + + + + R TQ LLR R D P L AV RTA+ +E L PL+ S S S+ SG + R E S SS++ G G A ESG LFELRDALRSRE++LLRLKRDV+VVAT+A GF+HL+ASLGS N + SF+F + G T+DS+ PSG G +G GGAG + A G +L R+P + P TA S A P R + EL+S R++X Q ST+ +S+G +A +A SGSPLVASAHEGL++MRAVLEQRALE R D+K MA+ SLNDVSARLRRSERKRN Q AELA XXXX XXXXXXXXXX L E AQ+ RLRD+LE A+GE AS+KE RRARE A AAEEEAG TA XXXXXXXXXXXX R REA+ + E XXXXXXXXXXXXXXX + E ++RERD++ VAE+AN+TAALVLAREGQEAERGR DRESKRAAAL EELVASEARRKVQEEEISLVRKQVSRLDAKIEGDMSR KA SDATARA+ AGAEREAN LRAS XXXXXXXXX ASLK EL AR+ AE LA A+EA A RAA AA+ DKDT LSELE AA+ XXXXXXXXX XXXXX A DLEGRLALA+AEAAE+RAE QRLKRKL A DR+ +A + G + G DDD F +G R RE LQE LRESC VM R+A+ALSAAA R R G LDDPRW G+ XXXXXXXXXXXXXXXXXXXXXXXXXXXX RAFSVDS SGVG+ D + D FGD ++ G +D +RVVSRA+VREV+ LRFEAARLLGVR++ERK A VA LR+DLRDSE REAE+TARLEESRELSREQTGFVEGVWKERHRL ERLRA EDAAR AATVLDGKV DLSAAL+QEQARAKREAEAAVAAEARDAMEALR+QLDDLRKEGEFQRLRAKYEKAKGRIVALEELVAASRRVSAQARREF+GAL ALK+SQELLLRIHRQRQ NNA D A P +HH A + GAP + GER + T+ S DAHVHELA+QASKLRGMS ++KRLLQ+AAGEVQGALEDTRDSLGVA AAA VGTQT G TR V+ LE+++ +K E E+ RL GEL A+GEL+++QGLL DK +EA LEA VARLE E EARE ASAA +D LAEAEA+ LSDT+ARL+AALA Q ELRSRCAELSLASGAFA+EVAKQKE+RARS AAA+AAAER RLER L ATR EA+++D+DVAQVLDAL++SEKERRRLE EL RQTK
Sbjct: 1 MEEDRPWVPSSDNAGSGAGRASPLNDSFKDDIQAIGRAVERLRDGFA--GTDSSSPAPAPGHDSAQWDGGLSSSMLASGPG---DESGRPS-----------SGDGVGGQPTLGNNSRPLV--------RELLPARAGVSGIFAEGDT----SVLERTRYSDGRLSLRELRSADKSRTHYSDERARPRPD--DAGDQSTTAVAAAAEGGGEMAGTGTQVSDQE-GLFNKGGSSGSTHSGSTSRRRAN--------DVGGPSSPGGAQREQSLVTPVLTPDVGEKDDGRGPGARGETQAVGLLRLRGDREPSLPTAVS-RTAS----AEPLLLLSPLIRSSTSASVLGSGDGAWESFRREHSASGDNSSSSGDAGTAVAGTED--------GMPAAXXXXXXAESGPLFELRDALRSREEDLLRLKRDVSVVATSARGFRHLSASLGSG---NVERSSSFSFQRSRGHGK-------DASGANTDDSDL------PSGNGSAFRGGGSDGSRAGGAGVDKINEEAFRPHHGGAVGGVLLRRQPADSALPGTALSFRTAATPGRPSDNELASSRRLX------XXXXXQQGSTATVSKG-NAIIAASGSPLVASAHEGLQRMRAVLEQRALEVGRAHDDSKEMAN--------SLNDVSARLRRSERKRNAQAAELAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSKDATAARXXXXXXXXXXGSLAETAQRXXXXX--XXXXRLRDRLETATGEXXXXXXXXXXXXXXXXASDKETRRARERAAAAEEEAGAA-----TAXXXXXXXXXXXXXXXX-------------------AERAQREAEASAELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXAEAEAGRLHSVRRERDSS-------VAEVANLTAALVLAREGQEAERGRFDRESKRAAALGEELVASEARRKVQEEEISLVRKQVSRLDAKIEGDMSRVKANSDATARATAAGAEREANSLRASXXXXXXXXXXXXXXXXXXXXNAD--ASLKAELAAARE----AEAELA-------ASEARA---KXXXXRAARAAQLDKDTXXXXXXXXXXXXXXXXXXXXXXLSELEHAATSAATAXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXSAFVRARKDLEGRLALAVAEAAESRAEAQRLKRKLQAVSDREDGGTPAGLGVGFSARTKRRNGGGGTRGKDDDYLFGLDGDRPHREGLQEALRESCGVMERIASALSAAAADRRTSRRPGSDGGSE---LDDPRWAFGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------RAFSVDSNRSGVGDADLRQ-------DGFGDCAESGGEGHDLRRVVSRAEVREVAERLRFEAARLLGVRKEERKAAGDTVASLRRDLRDSESREAEVTARLEESRELSREQTGFVEGVWKERHRLXXXXXXXXXXXERLRASEDAARTAATVLDGKVADLSAALRQEQARAKREAEAAVAAEARDAMEALRQQLDDLRKEGEFQRLRAKYEKAKGRIVALEELVAASRRVSAQARREFKGALEALKLSQELLLRIHRQRQ--NNAVADPTDTATPTTHPAAAPAPKHHHQPDAATRESHPGAPDETPSAAPADL-------------------------------AATAGERPTSAATSSLSTDAHVHELAAQASKLRGMSGNVKRLLQLAAGEVQGALEDTRDSLGVAGAAAAT--VGTQTAEGLDGPTRGEVECLEQQVVRMKAEGQAREAEKLRLSGELSAAVGELTKIQGLLEDKMSEAVVLEAHVARLETERNEAREAASAAANDGLAEAEAS---LSDTQARLEAALATQRELRSRCAELSLASGAFASEVAKQKEERARSQERARLATAELRDLSAKFSRASKTAAADAAAERDRLERELVATRAEARDIDTDVAQVLDALASSEKERRRLEAELHRQTK 1806 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1015.1.12 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1015.1.12 >prot_P-littoralis_Contig1015.1.12 ID=prot_P-littoralis_Contig1015.1.12|Name=mRNA_P-littoralis_Contig1015.1.12|organism=Pylaiella littoralis U1_48|type=polypeptide|length=2538bp MEEGGPCVPTDGVNRSTDRPNLHTDSFRDDIQAIGRAVERLRDGFASAGTback to top mRNA from alignment at P-littoralis_Contig1015:4433..18600- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1015.1.12 ID=mRNA_P-littoralis_Contig1015.1.12|Name=mRNA_P-littoralis_Contig1015.1.12|organism=Pylaiella littoralis U1_48|type=mRNA|length=14168bp|location=Sequence derived from alignment at P-littoralis_Contig1015:4433..18600- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1015:4433..18600- >mRNA_P-littoralis_Contig1015.1.12 ID=mRNA_P-littoralis_Contig1015.1.12|Name=mRNA_P-littoralis_Contig1015.1.12|organism=Pylaiella littoralis U1_48|type=CDS|length=7614bp|location=Sequence derived from alignment at P-littoralis_Contig1015:4433..18600- (Pylaiella littoralis U1_48)back to top |