mRNA_P-littoralis_Contig15.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.36.1
Unique NamemRNA_P-littoralis_Contig15.36.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.36.1 vs. uniprot
Match: Q8QNF4_ESV1K (EsV-1-125 n=2 Tax=root TaxID=1 RepID=Q8QNF4_ESV1K)

HSP 1 Score: 283 bits (723), Expect = 4.740e-95
Identity = 125/185 (67.57%), Postives = 160/185 (86.49%), Query Frame = 1 
Query:    1 MDTYNRWLDQFRKFKHEWIHSNEKVKCFVVHAIPPGNVYCTKTHCALATAIGSYCRSRTRINHREKSISVEDGTSMRPKLFFFTDKARRNYPVDLDFDHDFVLAVSKIKCNTKPIDVLDSFGMISYKLLDFKRSDILRVVRAMESVGFGVLHNGGLVCSDIERTGEASDRYCSRLPHREDPVWLY 555
            M+ Y  WL+QFRKFK +WIHS++K+ CFVV+AIPPGN Y TKTHC L TAIG+ C+++TRINHREKS+ VEDGTS++P + F T+K+R+NYPVDLDFDHDF +AV K+K +++P+DVLDSFG+ISY+L DF R DILRVV+AMES+GFGVLHNGGLVCS+ + TGE S+R+ S+LPHR+DPVW +
Sbjct:    1 MEAYVLWLEQFRKFKFKWIHSDDKINCFVVYAIPPGNKYTTKTHCDLVTAIGARCQTKTRINHREKSVVVEDGTSVKPTICFKTEKSRKNYPVDLDFDHDFSVAVKKMKTSSEPMDVLDSFGIISYELHDFTRGDILRVVKAMESLGFGVLHNGGLVCSEKDSTGEPSERFLSKLPHRDDPVWFF 185
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNF4_ESV1K4.740e-9567.57EsV-1-125 n=2 Tax=root TaxID=1 RepID=Q8QNF4_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:114975..115535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size561
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-125
Ec32 orthologEc-06_005600.1
Cds size561
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789710.246821-CDS-P-littoralis_Contig15:114974..1155351680789710.246821-CDS-P-littoralis_Contig15:114974..115535Pylaiella littoralis U1_48CDSP-littoralis_Contig15 114975..115535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.36.1prot_P-littoralis_Contig15.36.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 114975..115535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.36.1

>prot_P-littoralis_Contig15.36.1 ID=prot_P-littoralis_Contig15.36.1|Name=mRNA_P-littoralis_Contig15.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=187bp
MDTYNRWLDQFRKFKHEWIHSNEKVKCFVVHAIPPGNVYCTKTHCALATA
IGSYCRSRTRINHREKSISVEDGTSMRPKLFFFTDKARRNYPVDLDFDHD
FVLAVSKIKCNTKPIDVLDSFGMISYKLLDFKRSDILRVVRAMESVGFGV
LHNGGLVCSDIERTGEASDRYCSRLPHREDPVWLYT*
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mRNA from alignment at P-littoralis_Contig15:114975..115535+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.36.1 ID=mRNA_P-littoralis_Contig15.36.1|Name=mRNA_P-littoralis_Contig15.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=561bp|location=Sequence derived from alignment at P-littoralis_Contig15:114975..115535+ (Pylaiella littoralis U1_48)
ATGGACACCTACAACCGATGGTTGGACCAGTTCCGGAAATTCAAGCACGA
GTGGATACACTCGAACGAAAAAGTAAAGTGTTTTGTTGTCCACGCCATTC
CTCCGGGGAACGTATACTGTACGAAAACACACTGCGCTCTGGCCACGGCG
ATCGGGTCGTACTGCCGATCCCGGACGAGAATAAACCACCGCGAGAAATC
GATCTCCGTCGAGGACGGCACGTCGATGAGACCAAAGCTATTTTTTTTCA
CTGACAAGGCCAGGAGAAACTATCCCGTCGATCTGGACTTCGACCACGAC
TTTGTGCTGGCCGTGTCCAAGATTAAATGTAACACGAAGCCTATCGACGT
GCTCGATTCGTTTGGAATGATATCGTACAAGCTGCTCGATTTCAAGCGAT
CCGATATCCTCCGAGTCGTGCGAGCGATGGAAAGCGTTGGGTTCGGGGTG
CTCCACAACGGGGGTCTGGTCTGCTCGGACATCGAGCGCACGGGTGAAGC
GTCGGACCGGTACTGTTCCCGGCTGCCGCACAGGGAGGACCCCGTCTGGC
TGTACACGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:114975..115535+

>mRNA_P-littoralis_Contig15.36.1 ID=mRNA_P-littoralis_Contig15.36.1|Name=mRNA_P-littoralis_Contig15.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=561bp|location=Sequence derived from alignment at P-littoralis_Contig15:114975..115535+ (Pylaiella littoralis U1_48)
ATGGACACCTACAACCGATGGTTGGACCAGTTCCGGAAATTCAAGCACGA
GTGGATACACTCGAACGAAAAAGTAAAGTGTTTTGTTGTCCACGCCATTC
CTCCGGGGAACGTATACTGTACGAAAACACACTGCGCTCTGGCCACGGCG
ATCGGGTCGTACTGCCGATCCCGGACGAGAATAAACCACCGCGAGAAATC
GATCTCCGTCGAGGACGGCACGTCGATGAGACCAAAGCTATTTTTTTTCA
CTGACAAGGCCAGGAGAAACTATCCCGTCGATCTGGACTTCGACCACGAC
TTTGTGCTGGCCGTGTCCAAGATTAAATGTAACACGAAGCCTATCGACGT
GCTCGATTCGTTTGGAATGATATCGTACAAGCTGCTCGATTTCAAGCGAT
CCGATATCCTCCGAGTCGTGCGAGCGATGGAAAGCGTTGGGTTCGGGGTG
CTCCACAACGGGGGTCTGGTCTGCTCGGACATCGAGCGCACGGGTGAAGC
GTCGGACCGGTACTGTTCCCGGCTGCCGCACAGGGAGGACCCCGTCTGGC
TGTACACGTAG
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