mRNA_P-littoralis_Contig15.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.26.1
Unique NamemRNA_P-littoralis_Contig15.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.26.1 vs. uniprot
Match: D8LPG4_ECTSI (EsV-1-138 n=2 Tax=root TaxID=1 RepID=D8LPG4_ECTSI)

HSP 1 Score: 435 bits (1119), Expect = 1.960e-148
Identity = 229/404 (56.68%), Postives = 289/404 (71.53%), Query Frame = 1 
Query:    1 MNLVAWGSAIQIKKRIPEQAVREEDRLWSKIAEPARYEFIVGNQDALLSIHDWFHMASDDTGASACLFVHGKSGTGKSTAVETTARKFKFETITAHADRPRTPAHLDSVVREACVHGHRAVVVLDDFEMFLSETTSLRVLSKVLRKLV--GETFV-DGSRRLFVIISNSTHKLFEPIQDMSTVVHFRPLPPSQIHTILTRLANKVERHSHIPAEASISSSRSSSGTITPGINQLQLLYAGNAPSMGEGEHRRKKQHAAAAVAGRNSRDCISYLWSGLYTDKLLVHIMDSSLRTGLVMDRLLGFEKSRLDIVGDQLHREYPRRAASMQQLAGVADSLSVSDVNRMRVHADGLYEGENADAWSTHDICYISFVAGGVVAIKGQGRRDQSWSRKTHARLARSPGLVF 1203
            MNLVAW SAIQI+KR+  + V     LW ++A P  ++ +VGN  A+  I DWF  AS +   SACLF+HG+SGTGKSTAV   A+K +F+T+T +ADR RTPA L+ VVREA VHG R VVVLDDFE+FL ETTSLRVLSK+LR+L+  G+T V + SR LF+IISNS HK F  +QD+ST +HF  L  S+I+ +  RLA +V RHS++P  AS  SS SSSGTIT G+ QLQLLYAG+ P        RKKQ  A      + RDCISYLWS +YTDK+L H++D++   G V+DRL  FE+ RLD VG QLH EY RR  S++QL  VA+S+S+SD NR+  H D LY+GEN+D+WS +D+ ++SFVA GV+ IKGQ RRDQSWSRKTH RL +   LV 
Sbjct:    1 MNLVAWNSAIQIRKRVATENVCTAGALWYQVASPTSHQELVGNGKAIRQIEDWFSEASAEPETSACLFLHGESGTGKSTAVTMIAQKHEFKTVTTYADRSRTPARLEGVVREAGVHGPRGVVVLDDFEIFLEETTSLRVLSKLLRQLLSTGDTSVRNRSRCLFIIISNSKHKQFGSLQDISTTIHFERLHQSEINKVFNRLAWRVRRHSYVPPMASYLSSISSSGTITQGVQQLQLLYAGDTPPDFLRRPGRKKQKIAGHT--NSHRDCISYLWSDIYTDKILEHLVDNNFHEGRVIDRLRSFERERLDKVGGQLHEEYARRMTSVEQLRDVAESISMSDTNRLEFHHDALYDGENSDSWSENDMAFVSFVAYGVLTIKGQRRRDQSWSRKTHTRLLKCEALVL 402
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BLAST of mRNA_P-littoralis_Contig15.26.1 vs. uniprot
Match: B5LWJ4_9PHYC (Putative ATPase n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWJ4_9PHYC)

HSP 1 Score: 83.2 bits (204), Expect = 5.870e-14
Identity = 72/221 (32.58%), Postives = 104/221 (47.06%), Query Frame = 1 
Query:   79 LW-SKIAEPARYEFIVGNQDALLSIHDWFHMASDDTGASACLFVHGKSGTGKSTAVETTARKFKFETITAHADRPRTPAHLDSVVREACVHGHRAVVVLDDFEMFLSETTSLRVLSKVLRKLVGETFVDGSRRLFVIISNSTHKLFEPIQDMSTVVHFRPLPPSQIHTILTRLANKV-ERHSHIPAEAS-ISSSRSSSGTITPGINQLQLLYAGNAPSMGE 732
            LW + +A PA    IVGN+  +  I +WF   S        L V G  G  KS+AV   AR+  ++ + A+AD  R    LD++VRE  +H  RAV+VLD+FE+FL E T+LR +   ++  V            V+++       E I  +S  V F      Q    L+RL+ K+ +RH     +        +SSG     INQLQL     A  + E
Sbjct:   24 LWVNSLAAPAASRDIVGNRSCVADIENWFRSNSRTP-----LLVTGAPGVWKSSAVRLVAREQSWDIVVAYADIARNNKCLDAMVRETSMH-RRAVLVLDEFEVFLGEPTALRWIRNAIKTRVCP---------LVMVAGRFCDRLERIAAVSFHVQFDAYTSHQTKLALSRLSPKLADRHGCFLGQMDCFLIGANSSGNFVQTINQLQLCRRSPASCVSE 229
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPG4_ECTSI1.960e-14856.68EsV-1-138 n=2 Tax=root TaxID=1 RepID=D8LPG4_ECTSI[more]
B5LWJ4_9PHYC5.870e-1432.58Putative ATPase n=1 Tax=Feldmannia species virus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:103351..104610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog272844.PAB0069
Preferred namerfcL
PFAMsAAA,Rad17
Model size1206
Max annot lvl183968|Thermococci
KEGG koko:K04800
KEGG Pathwayko03030,map03030
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.76e-06
EggNOG OGsCOG0470@1|root,arCOG00470@2157|Archaea,2XT81@28890|Euryarchaeota,243G0@183968|Thermococci
DescriptionPart of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA
Cds size1206
COG categoryL
BRITEko00000,ko00001,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789709.8827603-CDS-P-littoralis_Contig15:103350..1037991680789709.8827603-CDS-P-littoralis_Contig15:103350..103799Pylaiella littoralis U1_48CDSP-littoralis_Contig15 103351..103799 -
1680789709.8938494-CDS-P-littoralis_Contig15:103853..1046101680789709.8938494-CDS-P-littoralis_Contig15:103853..104610Pylaiella littoralis U1_48CDSP-littoralis_Contig15 103854..104610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.26.1prot_P-littoralis_Contig15.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 103351..104610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.26.1

>prot_P-littoralis_Contig15.26.1 ID=prot_P-littoralis_Contig15.26.1|Name=mRNA_P-littoralis_Contig15.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=402bp
MNLVAWGSAIQIKKRIPEQAVREEDRLWSKIAEPARYEFIVGNQDALLSI
HDWFHMASDDTGASACLFVHGKSGTGKSTAVETTARKFKFETITAHADRP
RTPAHLDSVVREACVHGHRAVVVLDDFEMFLSETTSLRVLSKVLRKLVGE
TFVDGSRRLFVIISNSTHKLFEPIQDMSTVVHFRPLPPSQIHTILTRLAN
KVERHSHIPAEASISSSRSSSGTITPGINQLQLLYAGNAPSMGEGEHRRK
KQHAAAAVAGRNSRDCISYLWSGLYTDKLLVHIMDSSLRTGLVMDRLLGF
EKSRLDIVGDQLHREYPRRAASMQQLAGVADSLSVSDVNRMRVHADGLYE
GENADAWSTHDICYISFVAGGVVAIKGQGRRDQSWSRKTHARLARSPGLV
F*
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mRNA from alignment at P-littoralis_Contig15:103351..104610-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.26.1 ID=mRNA_P-littoralis_Contig15.26.1|Name=mRNA_P-littoralis_Contig15.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1260bp|location=Sequence derived from alignment at P-littoralis_Contig15:103351..104610- (Pylaiella littoralis U1_48)
ATGAACCTCGTGGCGTGGGGCTCGGCAATACAGATAAAGAAACGAATACC
CGAACAGGCGGTGCGCGAAGAAGACCGGCTGTGGAGCAAGATTGCCGAGC
CCGCGCGCTACGAGTTCATCGTGGGGAACCAAGACGCCCTCCTTTCCATC
CACGACTGGTTCCACATGGCCTCCGATGACACGGGGGCGTCTGCCTGCCT
CTTCGTGCACGGAAAGTCCGGCACCGGAAAATCGACGGCCGTGGAAACGA
CGGCCAGGAAGTTTAAATTTGAAACGATTACGGCGCACGCGGATAGGCCC
AGGACGCCGGCCCACCTCGACAGTGTCGTCAGAGAAGCGTGTGTGCACGG
ACACCGAGCGGTCGTGGTGCTGGATGATTTCGAGATGTTTCTCTCCGAAA
CCACTTCCCTCCGGGTATTGTCCAAGGTCCTCCGCAAGCTCGTGGGTGAG
ACTTTTGTTGACGGATCGCGGCGCCTCTTCGTCATCATCAGCAACTCCAC
GCACAAGCTCTTTGAGCCCATCCAGGACATGTCAACGGTGGTTCACTTCC
GGCCACTGCCCCCCAGCCAGATCCACACGATACTTACCCGCCTGGCGAAC
AAGGTCGAACGACACTCACACATACCTGCCGAGGCGTCGATCTCGTCGTC
GCGGTCGAGCTCGGGAACGATCACGCCTGGAATAAATCAACTACAGCTCC
TCTACGCCGGCAACGCACCGAGCATGGGTGAAGGCGAGCACCGTCGCAAG
AAACAACGTTTTCAAGATTTTCAAGATTTTCAAGATTTTCGAAACGAAGA
CGGAGACGAAGACGCGGCCGCCGCCGTCGCCGGGAGAAACAGTCGCGACT
GCATCTCCTACCTCTGGTCCGGCCTGTACACCGACAAGCTCCTGGTGCAC
ATCATGGACAGCAGCCTTCGAACCGGTCTCGTCATGGACAGGCTTCTGGG
GTTCGAGAAGTCGCGACTGGACATCGTCGGCGACCAGCTCCACCGCGAAT
ACCCCCGGCGGGCGGCGTCGATGCAACAGCTGGCCGGCGTCGCGGACTCC
CTGAGCGTGTCCGATGTCAACCGTATGCGGGTCCACGCGGACGGCCTCTA
CGAAGGAGAAAATGCGGACGCATGGTCGACCCACGACATCTGCTACATCT
CCTTCGTTGCCGGCGGCGTCGTCGCCATCAAGGGCCAGGGGCGGAGAGAC
CAGTCCTGGTCCCGGAAGACGCACGCAAGGCTCGCCAGGAGCCCGGGTTT
GGTGTTTTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:103351..104610-

>mRNA_P-littoralis_Contig15.26.1 ID=mRNA_P-littoralis_Contig15.26.1|Name=mRNA_P-littoralis_Contig15.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1206bp|location=Sequence derived from alignment at P-littoralis_Contig15:103351..104610- (Pylaiella littoralis U1_48)
ATGAACCTCGTGGCGTGGGGCTCGGCAATACAGATAAAGAAACGAATACC
CGAACAGGCGGTGCGCGAAGAAGACCGGCTGTGGAGCAAGATTGCCGAGC
CCGCGCGCTACGAGTTCATCGTGGGGAACCAAGACGCCCTCCTTTCCATC
CACGACTGGTTCCACATGGCCTCCGATGACACGGGGGCGTCTGCCTGCCT
CTTCGTGCACGGAAAGTCCGGCACCGGAAAATCGACGGCCGTGGAAACGA
CGGCCAGGAAGTTTAAATTTGAAACGATTACGGCGCACGCGGATAGGCCC
AGGACGCCGGCCCACCTCGACAGTGTCGTCAGAGAAGCGTGTGTGCACGG
ACACCGAGCGGTCGTGGTGCTGGATGATTTCGAGATGTTTCTCTCCGAAA
CCACTTCCCTCCGGGTATTGTCCAAGGTCCTCCGCAAGCTCGTGGGTGAG
ACTTTTGTTGACGGATCGCGGCGCCTCTTCGTCATCATCAGCAACTCCAC
GCACAAGCTCTTTGAGCCCATCCAGGACATGTCAACGGTGGTTCACTTCC
GGCCACTGCCCCCCAGCCAGATCCACACGATACTTACCCGCCTGGCGAAC
AAGGTCGAACGACACTCACACATACCTGCCGAGGCGTCGATCTCGTCGTC
GCGGTCGAGCTCGGGAACGATCACGCCTGGAATAAATCAACTACAGCTCC
TCTACGCCGGCAACGCACCGAGCATGGGTGAAGGCGAGCACCGTCGCAAG
AAACAACACGCGGCCGCCGCCGTCGCCGGGAGAAACAGTCGCGACTGCAT
CTCCTACCTCTGGTCCGGCCTGTACACCGACAAGCTCCTGGTGCACATCA
TGGACAGCAGCCTTCGAACCGGTCTCGTCATGGACAGGCTTCTGGGGTTC
GAGAAGTCGCGACTGGACATCGTCGGCGACCAGCTCCACCGCGAATACCC
CCGGCGGGCGGCGTCGATGCAACAGCTGGCCGGCGTCGCGGACTCCCTGA
GCGTGTCCGATGTCAACCGTATGCGGGTCCACGCGGACGGCCTCTACGAA
GGAGAAAATGCGGACGCATGGTCGACCCACGACATCTGCTACATCTCCTT
CGTTGCCGGCGGCGTCGTCGCCATCAAGGGCCAGGGGCGGAGAGACCAGT
CCTGGTCCCGGAAGACGCACGCAAGGCTCGCCAGGAGCCCGGGTTTGGTG
TTTTAA
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