mRNA_P-littoralis_Contig15.75.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.75.1
Unique NamemRNA_P-littoralis_Contig15.75.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.75.1 vs. uniprot
Match: Q9J3U4_ESV1K (EsV-1-57 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q9J3U4_ESV1K)

HSP 1 Score: 68.2 bits (165), Expect = 2.240e-9
Identity = 30/41 (73.17%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:  742 SAAFDMSSIGVTAVSYLGSGKWSVHTNDGRFIASFKKDTSK 864
            S++FD+SS+GVT+VSY+G+GKWSV T DG+FIASFKKD SK
Sbjct:  317 SSSFDLSSLGVTSVSYIGAGKWSVQTEDGKFIASFKKDNSK 357
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BLAST of mRNA_P-littoralis_Contig15.75.1 vs. uniprot
Match: D8LP90_ECTSI (EsV-1-57 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP90_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 2.030e-8
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:  742 SAAFDMSSIGVTAVSYLGSGKWSVHTNDGRFIASFKKDTSK 864
            S++ D+SS GVT+VSY+G+GKWSV T DG+FIASFKKD SK
Sbjct:  278 SSSLDLSSFGVTSVSYIGAGKWSVQTEDGKFIASFKKDNSK 318
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.75.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q9J3U4_ESV1K2.240e-973.17EsV-1-57 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP90_ECTSI2.030e-870.73EsV-1-57 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:183594..184658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog654926.Q9J3U4_ESV1K
Model size867
Max annot lvl10239|Viruses
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.34e-10
EggNOG OGs4QAK6@10239|Viruses,4QUP9@35237|dsDNA viruses no RNA stage
DescriptionN-acetylmuramoyl-L-alanine amidase activity
Cds size846
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789707.8354514-CDS-P-littoralis_Contig15:183593..1841201680789707.8354514-CDS-P-littoralis_Contig15:183593..184120Pylaiella littoralis U1_48CDSP-littoralis_Contig15 183594..184120 -
1680789707.845354-CDS-P-littoralis_Contig15:184318..1846371680789707.845354-CDS-P-littoralis_Contig15:184318..184637Pylaiella littoralis U1_48CDSP-littoralis_Contig15 184319..184637 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789707.8856766-UTR-P-littoralis_Contig15:184637..1846581680789707.8856766-UTR-P-littoralis_Contig15:184637..184658Pylaiella littoralis U1_48UTRP-littoralis_Contig15 184638..184658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.75.1prot_P-littoralis_Contig15.75.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 183594..184637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.75.1

>prot_P-littoralis_Contig15.75.1 ID=prot_P-littoralis_Contig15.75.1|Name=mRNA_P-littoralis_Contig15.75.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=282bp
MNVRAVRAHRQGESEKLQGTTPAPLEILKKTQTPQAPVKITKTELEKILG
GSGVTGPSGPSGPSGPSGPAGPAGPAGPAGPAGPAGPTGQDGQGSGESPP
GPQGPPVDGKTGAAGPRGAAGPAGPAGPAGAKGAGGPAGPKGAGGPAGPK
GAGGPAGPKGAAGPAGPKGADGPKGPAGPAGPKGAAGPAGPAGPAGLKGA
AGPAGPAGPAGADGPAGADGPAGADGPKGPAGPAGPAGSGSAAFDMSSIG
VTAVSYLGSGKWSVHTNDGRFIASFKKDTSK*
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mRNA from alignment at P-littoralis_Contig15:183594..184658-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.75.1 ID=mRNA_P-littoralis_Contig15.75.1|Name=mRNA_P-littoralis_Contig15.75.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1065bp|location=Sequence derived from alignment at P-littoralis_Contig15:183594..184658- (Pylaiella littoralis U1_48)
TCTCGTCCTCGTTCCACCCGGATGAACGTCCGAGCCGTTCGCGCGCACAG
GCAGGGGGAGTCCGAGAAACTTCAGGGGACGACGCCCGCCCCTCTGGAGA
TTCTGAAGAAGACGCAGACGCCCCAGGCCCCTGTAAAAATCACCAAGACC
GAGCTCGAGAAGATTCTCGGTGGTTCCGGTGTCACGGGTCCCTCCGGTCC
CTCCGGTCCCTCCGGTCCCTCCGGTCCCGCTGGTCCCGCTGGTCCCGCTG
GTCCCGCTGGTCCCGCTGGTCCCGCTGGTCCCACCGGCCAGGACGGCCAA
GGCAGCGGCGAGAGTCCTCCGGGTCCCCAGGGTCCTCCGGGTCCTCAGGG
TCCTCAGGGTCCTCCGGGTCCTCCGGGTCCTCCGGGTCACCAGGGTTCGA
GAGGAAAAGATGGCAAAGACGGCAAAGACGGCAAAGATGGAAAGGATGGC
CCCAAGGGCAAGGACGGTGTCGCAGCGAAGAGCGCCACGGGTCCACCCGG
CGCACTCGGGCCGAAGGGTGTCCAGGGTCCGGCGGGAGTCGACGGGAAGA
CGGGTGCCGCTGGTCCCAGGGGTGCGGCTGGTCCCGCTGGTCCCGCTGGT
CCCGCTGGTGCCAAGGGTGCCGGTGGTCCCGCTGGTCCCAAGGGTGCCGG
CGGTCCCGCTGGTCCCAAGGGTGCCGGCGGTCCCGCTGGTCCCAAGGGTG
CCGCTGGTCCCGCTGGTCCCAAGGGTGCCGATGGTCCCAAGGGTCCCGCT
GGTCCCGCTGGTCCCAAGGGTGCCGCTGGTCCCGCTGGTCCCGCTGGTCC
CGCTGGTCTTAAGGGTGCCGCTGGTCCCGCTGGTCCCGCTGGTCCCGCTG
GTGCCGATGGTCCCGCTGGTGCCGATGGTCCCGCTGGTGCCGATGGTCCC
AAGGGTCCCGCTGGTCCCGCTGGTCCCGCTGGTTCCGGTTCGGCCGCGTT
CGACATGTCGTCGATCGGAGTGACCGCAGTCTCGTACCTCGGGTCCGGCA
AGTGGTCCGTGCACACCAATGACGGTAGATTCATCGCATCCTTCAAGAAA
GATACTTCGAAGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:183594..184658-

>mRNA_P-littoralis_Contig15.75.1 ID=mRNA_P-littoralis_Contig15.75.1|Name=mRNA_P-littoralis_Contig15.75.1|organism=Pylaiella littoralis U1_48|type=CDS|length=846bp|location=Sequence derived from alignment at P-littoralis_Contig15:183594..184658- (Pylaiella littoralis U1_48)
ATGAACGTCCGAGCCGTTCGCGCGCACAGGCAGGGGGAGTCCGAGAAACT
TCAGGGGACGACGCCCGCCCCTCTGGAGATTCTGAAGAAGACGCAGACGC
CCCAGGCCCCTGTAAAAATCACCAAGACCGAGCTCGAGAAGATTCTCGGT
GGTTCCGGTGTCACGGGTCCCTCCGGTCCCTCCGGTCCCTCCGGTCCCTC
CGGTCCCGCTGGTCCCGCTGGTCCCGCTGGTCCCGCTGGTCCCGCTGGTC
CCGCTGGTCCCACCGGCCAGGACGGCCAAGGCAGCGGCGAGAGTCCTCCG
GGTCCCCAGGGTCCTCCGGTCGACGGGAAGACGGGTGCCGCTGGTCCCAG
GGGTGCGGCTGGTCCCGCTGGTCCCGCTGGTCCCGCTGGTGCCAAGGGTG
CCGGTGGTCCCGCTGGTCCCAAGGGTGCCGGCGGTCCCGCTGGTCCCAAG
GGTGCCGGCGGTCCCGCTGGTCCCAAGGGTGCCGCTGGTCCCGCTGGTCC
CAAGGGTGCCGATGGTCCCAAGGGTCCCGCTGGTCCCGCTGGTCCCAAGG
GTGCCGCTGGTCCCGCTGGTCCCGCTGGTCCCGCTGGTCTTAAGGGTGCC
GCTGGTCCCGCTGGTCCCGCTGGTCCCGCTGGTGCCGATGGTCCCGCTGG
TGCCGATGGTCCCGCTGGTGCCGATGGTCCCAAGGGTCCCGCTGGTCCCG
CTGGTCCCGCTGGTTCCGGTTCGGCCGCGTTCGACATGTCGTCGATCGGA
GTGACCGCAGTCTCGTACCTCGGGTCCGGCAAGTGGTCCGTGCACACCAA
TGACGGTAGATTCATCGCATCCTTCAAGAAAGATACTTCGAAGTGA
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