mRNA_P-littoralis_Contig1493.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1493.3.1
Unique NamemRNA_P-littoralis_Contig1493.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1493.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1493contigP-littoralis_Contig1493:4422..5452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size166
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size111
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789706.9131317-UTR-P-littoralis_Contig1493:4421..44711680789706.9131317-UTR-P-littoralis_Contig1493:4421..4471Pylaiella littoralis U1_48UTRP-littoralis_Contig1493 4422..4471 +
1680789706.9506547-UTR-P-littoralis_Contig1493:5447..54521680789706.9506547-UTR-P-littoralis_Contig1493:5447..5452Pylaiella littoralis U1_48UTRP-littoralis_Contig1493 5448..5452 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789706.9277666-CDS-P-littoralis_Contig1493:4471..45041680789706.9277666-CDS-P-littoralis_Contig1493:4471..4504Pylaiella littoralis U1_48CDSP-littoralis_Contig1493 4472..4504 +
1680789706.938632-CDS-P-littoralis_Contig1493:5369..54471680789706.938632-CDS-P-littoralis_Contig1493:5369..5447Pylaiella littoralis U1_48CDSP-littoralis_Contig1493 5370..5447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1493.3.1prot_P-littoralis_Contig1493.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1493 4472..5447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1493.3.1

>prot_P-littoralis_Contig1493.3.1 ID=prot_P-littoralis_Contig1493.3.1|Name=mRNA_P-littoralis_Contig1493.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=37bp
MAFDVRCKTSLSSNIHHNTPIRLPSMRALDWQMPPV*
back to top

mRNA from alignment at P-littoralis_Contig1493:4422..5452+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1493.3.1 ID=mRNA_P-littoralis_Contig1493.3.1|Name=mRNA_P-littoralis_Contig1493.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1031bp|location=Sequence derived from alignment at P-littoralis_Contig1493:4422..5452+ (Pylaiella littoralis U1_48)
TCCCAATGCAATACCCATCTATCATTTTCTCCCTGTTGTGAGTATCGACT
ATGGCTTTTGACGTTCGTTGCAAGACGTCTTTAGTGCCCTCCCATGTTGA
TGTGCTTCACGCCTTCGCGTACTGCTTTGCTGCGGAATTCTTGCTGGCTG
TGCCGTAGGTTGTTCAAGTCGTTTATTCGGTAGTTGTATTGATGGCAAGT
TGAAGTGCATCCTCGCTTGGCAGCGTGCGTTCGGGAGGTCACACGGATGA
TATTGTCGGTGGTCATTGCCTAAGTTCTGGCTGAGGCTACTGAACCGCAC
GTTCATCATGCTCTTGGGTAGGTGCCTAGTGAACCGCATTCATTTCCCTC
TCGAGGGCAGAAGTCGCCACCGCTTTGCTGCGGTGACGATTTCTCGCCCT
GTCTTCGCATCGAGTTCGAGCTTGTGTCGCCAACTGGGGAGCTGACTTGA
AAGAGTGACAAACCAGCTCTGACCGCGCACAGGCGAATTCCGATCGGCTT
ATCTCCGACGCTGCCATCAAAGAGAAATATCATGTATCTCAGGAATATGC
AGTAGAGTACGTGCTGTGGATATTTTGGGGCAACCCAATCGTCTCTTGTA
GACTCGTGAACTACTCGAATCCCCTCGAGATACCCTGTCCCTCTTCCCCC
TCCCCCCCCGTGATCTTATGTGCAAAGCACCAACAAGATCTTATGTACTT
GTCGGGTGTGAGCAGCAATATCCACCACAACACCACGATACGCCTGCCTT
CAATGCGTGCATTGGACTGGCAAATGCCGCCTGTGGAGTTCCTCGTGCCT
CTGTTTAACGTTGACAATAGAAGCGCGCTGTGATTACCTGCCCTCCCCCC
TACCGTGCAGACCTTTGTCCCTCCCAATGCAATACCCATCTATCATTTTC
TCCCTGTTGTGAGTATCGACTATGGCTTTTGACGTTCGTTGCAAGAAGAG
CAGCAATATCCACCACAACACCCCGATACGTCTGCCTTCAATGCGTGCAT
TGGACTGGCAAATGCCGCCTGTGTAGTTCCT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1493:4422..5452+

>mRNA_P-littoralis_Contig1493.3.1 ID=mRNA_P-littoralis_Contig1493.3.1|Name=mRNA_P-littoralis_Contig1493.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=111bp|location=Sequence derived from alignment at P-littoralis_Contig1493:4422..5452+ (Pylaiella littoralis U1_48)
ATGGCTTTTGACGTTCGTTGCAAGACGTCTTTAAGCAGCAATATCCACCA
CAACACCCCGATACGTCTGCCTTCAATGCGTGCATTGGACTGGCAAATGC
CGCCTGTGTAG
back to top