mRNA_P-littoralis_Contig1012.6.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1012.6.3
Unique NamemRNA_P-littoralis_Contig1012.6.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1012.6.3 vs. uniprot
Match: A0A6H5KQZ5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ5_9PHAE)

HSP 1 Score: 364 bits (934), Expect = 1.400e-117
Identity = 189/369 (51.22%), Postives = 242/369 (65.58%), Query Frame = 3
Query:   84 GMKGWCICCPSGFCFVQYIDGGFLGDLQLRGFKDCPLGNTARTALHVVLDARKTFSDKIVDSGVTIAMDNYFASAALLLSLATRDIFTVGTLRSNRVGLDGAMKLWKDKDMKATKRGEMVMARSPSEIAVITWVDSQVVNLLWSKQIFASD*EPIVYKRRVSGKNGEVMTSEQPIARADYVRNMGGVDVADQRLSSHDHVHKPMTFFWRRVFDQKLQQAISNAYLFFLMWAEVLLAQCKVML------------AERAEGSDAAES-DLTVEELEEFISGLVKMMRTDRKTWDTRLACLLMVKCSVGHENKGARRTRKVVPVYDSKGARSVKVCRGGLCSKHSDPTAHCNSKRARGVCLVRYLQQ*LGE 1151
            G+K W ICCPSG+CFVQ IDGGF GD++LR +  CPLG +ART ++V+L+A +TFS+KI+  G+T+AMDN+F  A LL  LATRDIF VGTLR NR+G++ A  LW  + M AT+RG+M+ ARS  E+ ++ W+DSQ V L+ +K +FA + EP+ Y++R +  NGE ++S QP+AR +YV+NMGGVDVADQRL SH H H+PMTFFWRRVFDQK  QA+SN +L F  WA VL+ QC   L             E  EG  AA+S DLTV EL EF + L K M+ +R  WD RLA  LM  C+VGH   GARR  K    Y   GA S +VC G  C   + P +     R RG C        LG+
Sbjct:   90 GIKCWAICCPSGYCFVQSIDGGFSGDIKLRPYASCPLGRSARTVMYVLLEACETFSNKIIGKGITVAMDNFFTGAPLLRCLATRDIFAVGTLRGNRIGVELANYLWAKEGMAATERGQMLTARS-DELVIVKWIDSQEVYLMSTKHVFADEWEPLAYEKRAANNNGEKVSSRQPLARKEYVKNMGGVDVADQRLGSHAHKHRPMTFFWRRVFDQKFAQAVSNGWLLFYEWAGVLVTQCTAALEAATQDGGMGDAGEAEEGGVAADSCDLTVAELREFQTLLKKAMKMERVDWDRRLANHLMSLCNVGHTENGARRATKPSESYLVNGACSSRVCHGRGCK--TPPGSPYAGTRTRGACWCDICTNGLGK 455          
BLAST of mRNA_P-littoralis_Contig1012.6.3 vs. uniprot
Match: A0A6H5KGW0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW0_9PHAE)

HSP 1 Score: 295 bits (755), Expect = 2.040e-93
Identity = 150/294 (51.02%), Postives = 197/294 (67.01%), Query Frame = 3
Query:   42 RW*KARRERTFSS*GMKGWCICCPSGFCFVQYIDGGFLGDLQLRGFKDCPLGNTARTALHVVLDARKTFSDKIVDSGVTIAMDNYFASAALLLSLATRDIFTVGTLRSNRVGLDGAMKLWKDKDMKATKRGEMVMARSPSEIAVITWVDSQVVNLLWSKQIFASD*EPIVYKRRVSGKNGEVMTSEQPIARADYVRNMGGVDVADQRLSSHDHVHKPMTFFWRRVFDQKLQQAISNAYLFFLMWAEVLLAQCKVMLAERAE----------------GSDAAESDLTVEELEEF 875
            R+ KA+  +T    G+KGW ICCPSG+CFVQ IDGGF  D+++R    C LG +ART L+V+L+A  TFSDKIV SG+T+AMDN+F  A++L  LATRDIF VGT R NR G+D    LW  + +KAT+RG+M+ ARS  E+ ++ W+DSQ V L+ +K +F  +  P+ Y+RR +  NG+ + S QP+AR +YV+N+GGVDVADQRLS+H H H+PMTFFW RV DQK  QA+SNA+L F  WA VL  QC   L    +                G+ A   DLTV EL+EF
Sbjct:    2 RFNKAKPIKT----GIKGWAICCPSGYCFVQSIDGGF-SDIKVRPHATCRLGRSARTVLYVLLEACPTFSDKIVGSGITVAMDNFFTGASVLRCLATRDIFAVGTRRGNRTGVDLVKHLWDKEGLKATERGDMLTARS-DELVIVKWIDSQEVYLMSTKHVFEDEWAPLAYERRAANNNGDKVPSHQPLARKEYVKNIGGVDVADQRLSAHAHTHRPMTFFWGRVLDQKFAQAVSNAWLLFFEWAGVLATQCTAALEAATQDGGVGDXXXXXXXXXXGAVAGSCDLTVAELQEF 289          
BLAST of mRNA_P-littoralis_Contig1012.6.3 vs. uniprot
Match: A0A6H5KG44_9PHAE (DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG44_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 2.260e-83
Identity = 123/207 (59.42%), Postives = 161/207 (77.78%), Query Frame = 3
Query:   84 GMKGWCICCPSGFCFVQYIDGGFLGDLQLRGFKDCPLGNTARTALHVVLDARKTFSDKIVDSGVTIAMDNYFASAALLLSLATRDIFTVGTLRSNRVGLDGAMKLWKDKDMKATKRGEMVMARSPSEIAVITWVDSQVVNLLWSKQIFASD*EPIVYKRRVSGKNGEVMTSEQPIARADYVRNMGGVDVADQRLSSHDHVHKPMTFF 704
            G+KGW ICCPSG+CFVQ IDGGF GD++LR    CPLG +ART L+V+L+A  TFSDKIV SG+T+AMDN+F  A+L+  LATRDIF VGTLR NR G+D A  LW  + +KAT+RG+M+ ARS  E+ ++ W+DSQ V L+ +K +F  +  P+ Y+RR +  NGE ++S+QP+AR +YV+NMGGVDVADQRLS+H H H+PMTFF
Sbjct:   52 GIKGWAICCPSGYCFVQSIDGGFSGDIKLRPHATCPLGRSARTVLYVLLEACPTFSDKIVGSGITVAMDNFFTGASLVRCLATRDIFAVGTLRGNRTGVDLAKHLWDKEGLKATERGDMLTARS-DELVIVKWIDSQEVYLMSTKHVFEDEWAPLAYERRAANNNGEKVSSQQPLARKEYVKNMGGVDVADQRLSAHAHTHRPMTFF 257          
BLAST of mRNA_P-littoralis_Contig1012.6.3 vs. uniprot
Match: A0A6H5JDZ7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDZ7_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 1.730e-73
Identity = 123/232 (53.02%), Postives = 167/232 (71.98%), Query Frame = 3
Query:  150 FLGDLQLRGFKDCPLGNTARTALHVVLDARKTFSDKIVDSGVTIAMDNYFASAALLLSLATRDIFTVGTLRSNRVGLDGAMKLWKDKDMKATKRGEMVMARSPSEIAVITWVDSQVVNLLWSKQIFASD*EPIVYKR-RVSGKNGEVMTSEQPIARADYVRNMGGVDVADQRLSSHDHVHKPMTFFWRRVFDQKLQQAISNAYLFFLMWAEVLLAQCKVMLAERAEGSDAAE 842
            F GD+++R +  CP+G +ART ++V+L+A +TFSDKI+ SGVT+AMDN+F  AALL  LATRDI+ VGTLR NR G+D A  +W  +  KAT+R +M+ ARS  E+ ++ W+ SQ V+L+ +K +FA++ EP+  +R R +  NGE ++S QP+AR  YV+NMGGVDVADQRL +H H H+PMTFFWRRVFDQKL  A+SNA+L F  WA VL  QC   L    +   A +
Sbjct:  139 FSGDIKVRPYASCPIGKSARTVMYVLLEACETFSDKIIGSGVTVAMDNFFTGAALLQCLATRDIYAVGTLRGNRTGVDLANYIWSREGTKATEREQMLKARS-DELVIVKWIGSQEVHLMSAKHVFAAEWEPLTLERKRAADNNGEKVSSSQPLARKKYVKNMGGVDVADQRLGAHAHTHRPMTFFWRRVFDQKLSHAVSNAWLLFYEWAWVLATQCTAALEAATQHGGAGD 369          
BLAST of mRNA_P-littoralis_Contig1012.6.3 vs. uniprot
Match: A0A6H5JC56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC56_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 1.140e-67
Identity = 114/227 (50.22%), Postives = 147/227 (64.76%), Query Frame = 3
Query:   84 GMKGWCICCPSGFCFVQYIDGGFLGDLQLRGFKDCPLGNTARTALHVVLDARKTFSDKIVDSGVTIAMDNYFASAALLLSLATRDIFTVGTLRSNRVGLDGAMKLWKDKDMKATKRGEMVMARSPSEIAVITWVDSQVVNLLWSKQIFASD*EPIVYKRRVSGKNGEVMTSEQPIARADYVRNMGGVDVADQRLSSHDHVHKPMTFFWRRVFDQKLQQAISNAYLFF 764
            G+K W  CCPSG+CFVQ IDGGF GD++LR    CP+G +ART ++V+L+A +TFSDKI+ SGVT+AMDN+F  AALL  LATRDIF V T R NR G+D +  +W  + MK T+RG+M+     S                                +R +  NGE ++S QP+AR ++V+NMGGVDVADQ L +H H H+PMTFFWRRVFDQK  QA+SNA+  F
Sbjct:  164 GIKCWAGCCPSGYCFVQSIDGGFSGDIKLRPHASCPIGKSARTVVYVLLEACETFSDKIIGSGVTVAMDNFFTGAALLRYLATRDIFAVRTPRGNRTGVDLSNYIWSKEGMKVTERGQMLRPARTSS-------------------------------KRAADHNGEKVSSSQPLARKEHVKNMGGVDVADQWLGAHAHTHRPMTFFWRRVFDQKFSQAVSNAWFLF 359          
BLAST of mRNA_P-littoralis_Contig1012.6.3 vs. uniprot
Match: A0A6H5KMF5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF5_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 3.060e-57
Identity = 132/367 (35.97%), Postives = 192/367 (52.32%), Query Frame = 3
Query:   84 GMKGWCICCPSGFCFVQYIDGGFLGDLQLRGFKDCPLGNTARTALHVVLDARKTFSDKIVDSGVTIAMDNYFASAALLLSLATRDIFTVGTLRSNRVGLDGAMKLWKDKDMKATKRGEMVMARSPSEIAVITWVDSQVVNLLWSKQIFASD*E--------PIVYKRRVSGKNGEVMTSEQPIARADYVRNMGGVDVADQRLSSHDHVHKPMTFFWRRVFDQKLQQAISNAYLFFLMWAEVLLAQCKVMLAERAEGSDAAESDLT-VEELEEFISGLVKMMRTDRKTWDTRLACLLMVKCSVGHENKGA---RRTRKVVP---VYDSKGARSVKVCRGGLCSKHSDPTAHCNS----KRARGVCLVR 1127
            GMK + +C  +G+C +  IDG F GD  LR  +DCPLG T R  LHV+L+  +T   K+V SGV IAMDNYF S  L   LA+ +IF VGT RS R    GA+   +  +      G+M   RS  E+A + W DS+ + L  +  I  +  E        P+    +  G  G+    +QP+ R DYV+ MGGVD ADQ+  SH H H+  T  WRRVFD K+ Q ++N +L F MW  +L+++  V++       DA  +    V+EL +    L ++ + +R  WD  L+ +LM +C+VG   KG    R + +  P   V+ S   +S +VC    CSK +     C      +  RGV + +
Sbjct:  135 GMKLYAVCDRNGYCLINSIDGSFKGDPSLRSLEDCPLGKTTRHVLHVLLEECETLRGKLVGSGVFIAMDNYFTSPTLFACLASHEIFAVGTCRSPRTC--GALPYIQSLERTTPNPGDMTFCRS-GEMAFVQWRDSKEILLCSTVHIGETGEEGGDINHFKPVPLALKGKGWAGKHKEHDQPVMRMDYVKYMGGVDRADQQNESHYHDHRSYTNHWRRVFDAKIMQMLTNNFLLFRMWVRLLMSEVDVLM-------DAHNTPFEEVQELADVKKELERLSKRERVDWDEELSEILMRRCNVGTIRKGGKVPRSSERQQPRGKVWGSVEIKSHRVCMDPACSKRTLKGCTCEEFCTFEGQRGVLMCK 491          
BLAST of mRNA_P-littoralis_Contig1012.6.3 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 1.610e-56
Identity = 128/350 (36.57%), Postives = 178/350 (50.86%), Query Frame = 3
Query:   87 MKGWCICCPSGFCFVQYIDGGFLGDLQLRGFKDCPLGNTARTALHVVLDARKTFSDKIVDSGVTIAMDNYFASAALLLSLATRDIFTVGTLRSNRVGLDGAMKLWKDKDMKATKRGEMVMARSPSEIAVITWVDSQVVNLLWSKQIFA-----------SD*EPIVYKRRVSGKNGEVMTSEQPIARADYVRNMGGVDVADQRLSSHDHVHKPMTFFWRRVFDQKLQQAISNAYLFFLMWAEVLLAQCKVMLAERAEGSDAAESDLTVEELEEFISGLVKMMRTDRKTWDTRLACLLMVKCSVGHENKGARR----TRKVVPVYDSKGARSVKVCRGGLCSKHSDPTAHC 1091
            MK    C  + +C    +DGG  GD +LR + DCPLG T R  LHV+L        KI  SGV IAMDNYF S  L   LA+ DIF VGT R++R    GA    +        RG+M   RS  ++A + W DS+ + L+ +  +                +P+    R  G+NGE +  +QP  R DYV NM GVD+ADQ+  SH H HK  T FWRRV+D KL+QA++NA+L F  W E+L+ + +        G         +EELE   + L  + + +R  WD ++A LLM +C+V   NKG +R     +   PV+ S   +S ++C    C   S     C
Sbjct:  428 MKLLAACDITSYCLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTLFECLASHDIFAVGTCRADRTA--GADAYLESLGRTIPNRGDMNFCRS-GQVACVQWADSKDIFLISTIHVAQPAKGKEEAGGIDHFKPLPLSLRAKGRNGEPLDLQQPYMRMDYVLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNAFLIFRKWVELLIREVEAKKPIAPGGE--------LEELELASTELATLSKVERAVWDEQMATLLMAECNVARPNKGGKRPASDNKPADPVWGSVTLKSGRLCLNPTCKTTSMKGCSC 766          
BLAST of mRNA_P-littoralis_Contig1012.6.3 vs. uniprot
Match: A0A6H5JHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH7_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 2.850e-54
Identity = 128/364 (35.16%), Postives = 157/364 (43.13%), Query Frame = 3
Query:   84 GMKGWCICCPSGFCFVQYIDGGFLGDLQLRGFKDCPLGNTARTALHVVLDARKTFSDKIVDSGVTIAMDNYFASAALLLSLATRDIFTVGTLRSNRVGLDGAMKLWKDKDMKATKRGEMVMARSPSEIAVITWVDSQVVNLLWSKQIFASD*EPIVYKRRVSGKNGEVMTSEQPIARADYVRNMGGVDVADQRLSSHDHVHKPMTFFWRRVFDQKLQQAISNAYLFFLMWAEVLLAQCKVMLAERAEGSD------------------AAES-DLTVEELEEFISGLVKMMRTDRKTWDTRLACLLMVKCSVGHENKGARRTRKVVPVYDSKGARSVKVCRGGLCSKHSDPTAHCNSKRARGVC 1118
            G+K W ICCPSG+CFVQ IDGGF GD++L+ +  CP+G +ART +    D                                                                                                                  NGE ++S QP+AR +YV+NMGGVDVADQRL +H   H+PMTFFWRRVF QK  QA+SNA+L F  WA VL  QC V L    +  +                  AA+S DLTV EL EF S + K M+ +R  WD RLA  LM  CSVGH   GARRT K V +Y  KGA+S  VC GG C + +  +      R RGVC
Sbjct:  253 GIKCWAICCPSGYCFVQSIDGGFSGDIKLKPYATCPVGKSARTVVKRAAD------------------------------------------------------------------------------------------------------------------NGEKVSSSQPLARKEYVKNMGGVDVADQRLGAHARTHRPMTFFWRRVFAQKFSQAVSNAWLLFYEWAGVLAKQCTVALDAATQDGEVGDXXXXXXXXXXXXXXAAADSCDLTVAELREFQSLVKKAMKVERVDWDRRLANHLMSLCSVGHTETGARRTAKPVEMYSVKGAKSSLVCYGGHCEETAKASRRYKGSRTRGVC 502          
BLAST of mRNA_P-littoralis_Contig1012.6.3 vs. uniprot
Match: A0A6H5KPD8_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD8_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.180e-51
Identity = 86/158 (54.43%), Postives = 120/158 (75.95%), Query Frame = 3
Query:   84 GMKGWCICCPSGFCFVQYIDGGFLGDLQLRGFKDCPLGNTARTALHVVLDARKTFSDKIVDSGVTIAMDNYFASAALLLSLATRDIFTVGTLRSNRVGLDGAMKLWKDKDMKATKRGEMVMARSPSEIAVITWVDSQVVNLLWSKQIFASD*EPIVYK 557
            G+K W ICCPSG+ FVQ IDGGF GD++LR +  CPLG +ART ++V+L+A +TFS+KI+  G+T+AMDN+F  A LL  LATRDIF VGTLR NR+G++ A+ LW  + M AT+RG+M+ ARS  E+ ++ W+DSQ V L+ +K +FA + EP+ Y+
Sbjct:  156 GIKCWAICCPSGYSFVQSIDGGFSGDIKLRPYASCPLGRSARTVMYVLLEACETFSNKIIGKGITVAMDNFFTGAPLLGCLATRDIFAVGTLRGNRIGVELAIYLWAKEGMAATERGQMLTARS-DELVIVKWIDSQEVYLMSTKHVFADEWEPLAYE 312          
BLAST of mRNA_P-littoralis_Contig1012.6.3 vs. uniprot
Match: A0A6H5K5P5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5P5_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 4.800e-47
Identity = 86/157 (54.78%), Postives = 118/157 (75.16%), Query Frame = 3
Query:   84 GMKGWCICCPSGFCFVQYIDGGFLGDLQLRGFKDCPLGNTARTALHVVLDARKTFSDKIVDSGVTIAMDNYFASAALLLSLATRDIFTVGTLRSNRVGLDGAMKLWKDKDMKATKRGEMVMARSPSEIAVITWVDSQVVNLLWSKQIFASD*EPIVY 554
            G+K +   C +G+C++Q IDGGF GD+ LR    CPLG TART LHV+L+A + FS+KI +SGVT+AMDNYF SA LLLSLA+RDIF VGTLR  R GLDGAM+LW++ +    ++G+M+ ARS ++I +I WVDS+ V+L+ +K +F  D  P++Y
Sbjct:  393 GIKRFACWCWTGYCYLQSIDGGFYGDMGLRPHDKCPLGRTARTVLHVLLEACEVFSNKINNSGVTVAMDNYFTSAGLLLSLASRDIFAVGTLRGKRSGLDGAMELWQNNEESTKEKGDMIFARS-NDIVIIEWVDSKTVHLMSTKHVFEEDWNPLLY 548          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1012.6.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQZ5_9PHAE1.400e-11751.22DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KGW0_9PHAE2.040e-9351.02DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KG44_9PHAE2.260e-8359.42DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5JDZ7_9PHAE1.730e-7353.02DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JC56_9PHAE1.140e-6750.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMF5_9PHAE3.060e-5735.97DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5LEE0_9PHAE1.610e-5636.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHH7_9PHAE2.850e-5435.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPD8_9PHAE1.180e-5154.43DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5K5P5_9PHAE4.800e-4754.78DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1012contigP-littoralis_Contig1012:28963..31726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1523
Hectar predicted targeting categoryother localisation
Exons3
Cds size555
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789354.3631582-UTR-P-littoralis_Contig1012:28962..290461680789354.3631582-UTR-P-littoralis_Contig1012:28962..29046Pylaiella littoralis U1_48UTRP-littoralis_Contig1012 28963..29046 +
1680789354.3745706-UTR-P-littoralis_Contig1012:29649..301211680789354.3745706-UTR-P-littoralis_Contig1012:29649..30121Pylaiella littoralis U1_48UTRP-littoralis_Contig1012 29650..30121 +
1680789354.3827362-UTR-P-littoralis_Contig1012:30759..307901680789354.3827362-UTR-P-littoralis_Contig1012:30759..30790Pylaiella littoralis U1_48UTRP-littoralis_Contig1012 30760..30790 +
1680789354.4026089-UTR-P-littoralis_Contig1012:31345..317261680789354.4026089-UTR-P-littoralis_Contig1012:31345..31726Pylaiella littoralis U1_48UTRP-littoralis_Contig1012 31346..31726 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789354.393322-CDS-P-littoralis_Contig1012:30790..313451680789354.393322-CDS-P-littoralis_Contig1012:30790..31345Pylaiella littoralis U1_48CDSP-littoralis_Contig1012 30791..31345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1012.6.3prot_P-littoralis_Contig1012.6.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1012 30791..31345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1012.6.3

>prot_P-littoralis_Contig1012.6.3 ID=prot_P-littoralis_Contig1012.6.3|Name=mRNA_P-littoralis_Contig1012.6.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=185bp
MTSEQPIARADYVRNMGGVDVADQRLSSHDHVHKPMTFFWRRVFDQKLQQ
AISNAYLFFLMWAEVLLAQCKVMLAERAEGSDAAESDLTVEELEEFISGL
VKMMRTDRKTWDTRLACLLMVKCSVGHENKGARRTRKVVPVYDSKGARSV
KVCRGGLCSKHSDPTAHCNSKRARGVCLVRYLQQ*
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mRNA from alignment at P-littoralis_Contig1012:28963..31726+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1012.6.3 ID=mRNA_P-littoralis_Contig1012.6.3|Name=mRNA_P-littoralis_Contig1012.6.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=2764bp|location=Sequence derived from alignment at P-littoralis_Contig1012:28963..31726+ (Pylaiella littoralis U1_48)
CAAGCTTGCAGATCCTGGAGCGTGGCTGTCTTACGACGAGCAGATGGTAA AAAGCACGGCGAGAGCGAACTTTTTCATCATGAGGTACAACCCGAAGAAG CCCATCAAGCATGGTGAGAGGCTTACTTTTTTGGTTTATGCTATGGCCTG TAGCGATCTCCAGAAAGCAAAGGGCATGCAAAACGAATGGGACGGACTCT CAGACTGGAGTGTTAAAATCTGTTCGGCTCCGACATTTTCTTTTTGCGTG TGACCATCTGCTTGCAAGCGGGGAGGGGGGGGGGGGTGTAAGTGATTTGA CACGTCATGAAATGTGACGAGGACTTGGTTTGTTTCGGGACGTGTTGCGG ACGTGAGACACCAGCACCGGGAAGTGCGACGCGTCCGAAACTGTTGTATG TTGCACGCACGACTGAGGAGCAACATGAAATTGAAATCCGGCGACCCTCC CCCCCCCCGCACACGCGCACACACGCACGCTAAAATACCCCCCTTCATTG TGGTCCCCCACGGGTACCAACGAACACAAAATAATTGGGGTAACTCTTCC ATGAGTGCGGGTGTTTGAGTGCAAAATATGAAACAGGTGTTAGTTTGTTT GACCATCACTGGGTTCACGAACTCGTTCGTATTCCCCCTGTTCGTTTCTC TCCTGCCCCGCCTTCTTTTTTTCTACATCAATTTTAGGCATGAAGGGCTG GTGCATTTGTTGTCCTTCAGGTTTTTGCTTCGTCCAGTACATCGACGGTG GCTTCCTCGGAGACCTGCAGCTCAGAGGGTTCAAGGACTGTCCCCTCGGC AACACCGCGAGAACGGCTCTTCACGTTGTGCTCGACGCGAGAAAAACGTT CTCGGACAAGATCGTCGACTCCGGAGTAACCATCGCCATGGACAACTATT TCGCGTCGGCGGCACTGCTGCTGTCCCTCGCGACCCGTGACATTTTTACC GTGGGCACGCTGCGCAGCAACCGCGTGGGGTTGGATGGAGCGATGAAGCT CTGGAAGGACAAGGACATGAAGGCGACCAAGCGCGGAGAAATGGTGATGG CGCGCTCACCGTCGGAGATTGCGGTGATCACCTGGGTCGACTCGCAGGTC GTGAACCTGTTGTGGTCCAAGCAAATCTTCGCAAGCGACTAGGAACCTAT CGTGTACAAGTGAGTGGGTGCTGTAGTTCGAACGACCTGTCATGTATCCG GTATGTGCCCCCCTCCCCTCCTGCAACACCTACCGGTGTCAGGTCGATCG GGCACGACGCTCCGGGACTCCTGCGGTGAGGGACACCACTCGGTTTGGCG TTGATGCCGGGCTTCGGTCTTCCTTTTTCAGCACCGATCGTCCCTCGACG ATATACCAAAACACATATGCCCCATGCGCCACCCCGGCCGTAGTTGAAAA TTGCCGTAGAGTGGCCCGTTTGTTTTTGTGTATGTTTCATGATTACCTCG AGACCACTGACCAAAATAGAGGAGTGGTTTGTTTGCCACGCACTCGGTCG TGTTTCCGCATGCGGGGCAGAGGTCCAGCGGTATGATGAAGACGCGCTAG TTGTCTGGTAGTCCTGCACTCCAACCCGTCATATTTTCTCTGGCTGTAGC TCGTAGAGATGGTATTCGTACGCTTATTTTGTTTCACGGTCATGGCGTGC GCTGGTTGTTATCAGGACTGGCCATGTATATGGGGCACGCTAGCATACTG CGTGCCTCCGTTCATTCATTGGTCAACGCAACGCATCGAAATAGACCTAC CCCTGCCCCCAACGTCGCGCGCCCCAAACCGTTTATTGGACCCGCAGGAG ACGCGTGTCAGGCAAGAACGGGGAGGTGATGACGAGCGAGCAGCCCATTG CTCGCGCTGATTACGTGAGGAACATGGGTGGTGTAGATGTCGCTGATCAG CGGCTTAGCTCGCACGACCACGTGCACAAGCCCATGACGTTTTTCTGGCG GCGTGTGTTCGACCAGAAGTTGCAGCAGGCCATTAGCAATGCGTACCTCT TTTTTCTGATGTGGGCGGAAGTGCTGCTCGCGCAGTGCAAGGTGATGCTG GCGGAGCGTGCGGAGGGGAGTGACGCCGCCGAGAGTGACCTTACCGTGGA AGAGCTAGAGGAGTTCATCTCAGGGTTGGTCAAAATGATGAGGACAGACC GCAAAACGTGGGACACCAGACTTGCATGCCTTCTCATGGTAAAGTGCAGT GTCGGTCATGAGAACAAAGGAGCAAGGCGTACGCGTAAGGTGGTTCCTGT GTATGACAGCAAGGGTGCGCGTTCCGTCAAGGTCTGTAGGGGGGGGTTGT GCTCCAAGCATTCAGACCCCACGGCCCATTGCAATTCGAAGAGGGCGCGA GGGGTTTGTTTGGTGCGGTATCTGCAGCAATAGCTTGGGGAAGGTCAGGG CCGTCCACCTTTGCAAGCAATGTCACGGGTCCACAGAGGGGCACGTTGCA GCGGCAGCGCACGCCGATAAGCAATACACACCCATCAACTGGGCGACATG AATTTCTTGATTGCGTGTATGTTCGCGGCAGAAAAGCATGATCACGATGA GTGCAACGATGCGAGTGTCGAATTTATAATTTTACCGTAGAAGAGCTCGG AGAAAGGCTAGGGGGCTGCTCTTCCTTGTTCTCTACCATAGCGTGGGTGT GCACGACACCTCTTTTTCTTTGTTGTCGTGGTTGGCGGACGGGGGTTGGG TCCACATGTATCGTTTGGCGTTTGTTTGGTGTGGGGTGGGATACCTGGCG TGTTGAAGGTCAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1012:28963..31726+

>mRNA_P-littoralis_Contig1012.6.3 ID=mRNA_P-littoralis_Contig1012.6.3|Name=mRNA_P-littoralis_Contig1012.6.3|organism=Pylaiella littoralis U1_48|type=CDS|length=555bp|location=Sequence derived from alignment at P-littoralis_Contig1012:28963..31726+ (Pylaiella littoralis U1_48)
ATGACGAGCGAGCAGCCCATTGCTCGCGCTGATTACGTGAGGAACATGGG
TGGTGTAGATGTCGCTGATCAGCGGCTTAGCTCGCACGACCACGTGCACA
AGCCCATGACGTTTTTCTGGCGGCGTGTGTTCGACCAGAAGTTGCAGCAG
GCCATTAGCAATGCGTACCTCTTTTTTCTGATGTGGGCGGAAGTGCTGCT
CGCGCAGTGCAAGGTGATGCTGGCGGAGCGTGCGGAGGGGAGTGACGCCG
CCGAGAGTGACCTTACCGTGGAAGAGCTAGAGGAGTTCATCTCAGGGTTG
GTCAAAATGATGAGGACAGACCGCAAAACGTGGGACACCAGACTTGCATG
CCTTCTCATGGTAAAGTGCAGTGTCGGTCATGAGAACAAAGGAGCAAGGC
GTACGCGTAAGGTGGTTCCTGTGTATGACAGCAAGGGTGCGCGTTCCGTC
AAGGTCTGTAGGGGGGGGTTGTGCTCCAAGCATTCAGACCCCACGGCCCA
TTGCAATTCGAAGAGGGCGCGAGGGGTTTGTTTGGTGCGGTATCTGCAGC
AATAG
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