mRNA_P-littoralis_Contig149.12.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig149.12.2
Unique NamemRNA_P-littoralis_Contig149.12.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig149.12.2 vs. uniprot
Match: A0A6H5L4Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q4_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.790e-32
Identity = 69/97 (71.13%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:  820 TLGVLLCADNHLSTDCLVELEYAMGRPKKSVRELVGQVQRSIDKQDSLSKGEGTRRSTSVAGPSHG-EPSVTLASGQETSIQVSFGRKDNVIGNITV 1107
            TLG+LLC DNHLS D L+E++YAM RPK+ VR+LVGQVQRSID Q+ LSKG  T + T VAG  HG EPSV LA GQETSIQVSFGRKDN+IG+I V
Sbjct:   10 TLGILLCQDNHLSADTLIEIDYAMARPKRPVRDLVGQVQRSIDTQNFLSKGVETGQQTKVAGVPHGGEPSVQLAPGQETSIQVSFGRKDNIIGSIPV 106
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BLAST of mRNA_P-littoralis_Contig149.12.2 vs. uniprot
Match: F0YJL1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJL1_AURAN)

HSP 1 Score: 63.2 bits (152), Expect = 4.980e-7
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 1 
Query: 1027 VTLASGQETSIQVSFGRKDNVIGNITVTNDTSLEEARAIIGPLLRPADRTYGFLSITGG-VVPPEDEQARRVVWDCKIPVQLRPASWVAIGRA 1302
            + L   Q  ++QVS+GR+ NVIGN+  +  TSL E R +I   L  AD +Y  ++  G    P  +E  R V+ DC   +QLRP++W+ +  A
Sbjct:  391 ILLHPDQNANVQVSYGRRPNVIGNLRCSATTSLAEMRYLITKNLSLADESYLMIAHDGTRAFPRHEEDKRHVLLDCGHNLQLRPSTWLTLAPA 483
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig149.12.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4Q4_9PHAE1.790e-3271.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0YJL1_AURAN4.980e-737.63Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig149contigP-littoralis_Contig149:39794..44104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009040586.1
PFAMsLRR_6,zf-C2HC_2
Model size1366
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons7
Evalue1.81e-14
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-01_003710.1
Descriptioninterleukin-8 biosynthetic process
Cds size672
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig149.12.2prot_P-littoralis_Contig149.12.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig149 39855..42933 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789703.052699-UTR-P-littoralis_Contig149:39793..398541680789703.052699-UTR-P-littoralis_Contig149:39793..39854Pylaiella littoralis U1_48UTRP-littoralis_Contig149 39794..39854 -
1680789703.1203086-UTR-P-littoralis_Contig149:42933..429881680789703.1203086-UTR-P-littoralis_Contig149:42933..42988Pylaiella littoralis U1_48UTRP-littoralis_Contig149 42934..42988 -
1680789703.1325936-UTR-P-littoralis_Contig149:43245..434141680789703.1325936-UTR-P-littoralis_Contig149:43245..43414Pylaiella littoralis U1_48UTRP-littoralis_Contig149 43246..43414 -
1680789703.141433-UTR-P-littoralis_Contig149:43695..441041680789703.141433-UTR-P-littoralis_Contig149:43695..44104Pylaiella littoralis U1_48UTRP-littoralis_Contig149 43696..44104 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789703.0639524-CDS-P-littoralis_Contig149:39854..400551680789703.0639524-CDS-P-littoralis_Contig149:39854..40055Pylaiella littoralis U1_48CDSP-littoralis_Contig149 39855..40055 -
1680789703.0739746-CDS-P-littoralis_Contig149:41564..416541680789703.0739746-CDS-P-littoralis_Contig149:41564..41654Pylaiella littoralis U1_48CDSP-littoralis_Contig149 41565..41654 -
1680789703.0879538-CDS-P-littoralis_Contig149:41907..419911680789703.0879538-CDS-P-littoralis_Contig149:41907..41991Pylaiella littoralis U1_48CDSP-littoralis_Contig149 41908..41991 -
1680789703.0997255-CDS-P-littoralis_Contig149:42355..425511680789703.0997255-CDS-P-littoralis_Contig149:42355..42551Pylaiella littoralis U1_48CDSP-littoralis_Contig149 42356..42551 -
1680789703.109633-CDS-P-littoralis_Contig149:42832..429331680789703.109633-CDS-P-littoralis_Contig149:42832..42933Pylaiella littoralis U1_48CDSP-littoralis_Contig149 42833..42933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig149.12.2

>prot_P-littoralis_Contig149.12.2 ID=prot_P-littoralis_Contig149.12.2|Name=mRNA_P-littoralis_Contig149.12.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=224bp
MLLSNCGLLCLDISNNRLGAAGIEAIAIAVARNTTLLELDLSGCGGTESS
FRAVAESVEANKTLGVLLCADNHLSTDCLVELEYAMGRPKKSVRELVGQV
QRSIDKQDSLSKGEGTRRSTSVAGPSHGEPSVTLASGQETSIQVSFGRKD
NVIGNITVTNDTSLEEARAIIGPLLRPADRTYGFLSITGGVVPPEDEQAR
RVVWDCKIPVQLRPASWVAIGRA*
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mRNA from alignment at P-littoralis_Contig149:39794..44104-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig149.12.2 ID=mRNA_P-littoralis_Contig149.12.2|Name=mRNA_P-littoralis_Contig149.12.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4311bp|location=Sequence derived from alignment at P-littoralis_Contig149:39794..44104- (Pylaiella littoralis U1_48)
GCGGCGTGGCTCAACCTAAAATAAGGTTATTCACTGTCGTCGTTGAAGTT
CTTTGAAGTACACATTTTCGACTGCACATCACGACTCTCAACCGTCGCTC
TTATAAGATGCTCGAAATGACTGGTTGAACTTTCGAGGATGTTCGTGAAG
CTATGCACGTCTTGTCACAAAGTTCACAACTACAGCAGTGACAAGCAGTG
CTGATTCGAACCGTTTACAAAATCAGCCGGGCCTCACCGCCGCTTTTCTA
ATGGTAGCAATAGCATTGGATCCACTGGTGCTGAGGGGGTTGCGGCGGCC
CTCGCAAAGGCTCCCACGCTGCGAGAGCTGCATTTTTCGGGAAACGCTCT
GGGGGGCGTAGGGGTGGCGGCGCTGGTAAAGGGGGCTGTACAAGGCCGAG
GATTGCGAGGTGACCGTTCGGTAGAACCAGTTGGCTTCGTATTGTGAAAA
CGACGCCTTTTAGACGTAGGTGTATTTAACGGAAGATGACCTTCGTCACT
ATTTCTCGTGACATTCAACCACGATTATTCGGTCTCGTCTTCCAATGATG
CTCCGCAGCGATTTCCAAACCTGACCGTATAGTCGAACGCAAAGATATTT
CGCTCCACGTTTCAAGGTTTAGCTTTTGAAAGTAGAACAACACCATGCCA
GGAACGTCATTACCTGTGCACTGCCGGTTTTGATCGGCAGGCCTCTACGT
AAGCGGATGCGGCGTGGGTGATATCGAAGCCAAGGAAATCGCCTTCGCCC
TGCAAGCTTCTCTGCACCTCGAGACACTTTGTTTAGGGCATAACTCCATA
GGAGACCACGGTGTGTCGGCACTAGCTCGCCAAGCAGCGGATAACCACAC
CCTCAGGAGGTAACGTCCCAAGAGAATTGGAGAAAATTGTCTTCTTTCAT
CTCCAATTTTGAGTACCAACATTATTGTCATCGATTCCCGCAGATCACAT
TAGGGGATCGAAAGTTGTTGTTGTCGCTAACTACTACGTTCATGGCTTTC
ATACCAAGACAACATAAAGCTTTGCGGTGAGGGAAGTATGACTCTACTTT
TCCAAAAGTTTTCTCCACCTTCTGGCTGCGTTTTTTGCTTCCCGACGTCA
CCCACATCGCTTCAAGGCTACTTCTTCCGTGCAACCGACTGAAAGCTGCG
GGAGGTAAAGCCATTGCCGCCATGCTTCTCTCCAACTGTGGCCTGCTGTG
CCTTGACATCTCCAACAACCGTCTCGGGGCTGCGGGAATAGAGGCCATAG
CAATTGCCGTCGCCAGGAACACGTGAGCTTGTTACGCCTATTCATGTCAT
AGTACAGTATTGGGAGCACCGAGCAACACTTTGAAATTTGAACGAGTGTG
GTACATAGCATTCTTTGAGAGGTGCAACTGTACGGTGAAGGTCTGTCGAT
AGAGAACCTGGTAGCGACTGGAAATTGCCTCAAAATAGTGTGAAAATTGC
AGGTCGAAACTGCTCGAAGCTACACCAGTGCCTAGACACCAGGAAAAATA
AAAGTGCATAGTTTTCCTTTGCTGAACCCGTCGCGCCGACATGACGCGCT
CAGAACGTTGCTGGAGTTGGACTTATCGGGATGTGGGGGAACAGAATCCT
CGTTTCGAGCAGTGGCCGAGTCCGTGGAAGCGAACAAAACTCTCGGAGTG
CTACTCTGTGCCGACAACCACCTGAGCACCGACTGCCTGGTTGAACTAGA
ATATGCAATGGGTAGACCCAAGAAATCCGTTCGTGAGTTGGTGGGGCAGG
TGCGAATCGTCACGTAGAGGTATGCAATACGATTAACATACACCCACTTT
AACATTTTGCACAGGGGAGTGTGTCAATATCTATCAAGGGGAATTTCTGT
TGATGTGGTACCTTTCCTACCATGTGTGAGCTCTCGAGACCACGCACAGA
CCTAATGCTGTGAAAGTACGCTGTCTTGAGCTTCTGGGTGGGTACAACGT
GGTCCAGTCAGAAACGCAAGAATATTGTCGTAAACTTAAGGGGCACAGCT
AAAACAACGAGCTGCCTGGAGGCATCGACGATTATTTACTTTTCGTTTGT
ATTGCCATCAGTCGAACGTATCGTGCAAGATCCTCCTTACCTACGACGTC
GCCGTGTCTGTAGGTGCAAAGGTCCATTGATAAACAGGACTCTCTGTCCA
AGGGTGAGGGAACCAGGCGTTCAACCAGCGTCGCAGGGCCCTCTCACGTA
AGTGTGCTTATCTGTTTACCGAGGCCATGCCATATTGAGACGGCATGGTG
GTACATGCGAGGGAACGAGGAATCATTGTGGTTTACAAATAACACGATCT
AAATGTAATTGTCCAGCTGCTGCCATACAACGCCACCATGGAACAAAAAT
GAGCACCACTGTGCGTAGGGCGAGACCGGTCTCTAGACACCTGCCAATAA
TTATGGTTTCGTTTGCGCTTTTGTTGCCTTACCAATTTGGCCTATTTCAG
GGAGAACCGTCCGTAACGCTGGCCTCCGGGCAAGAAACGAGTATTCAGGT
GTCCTTCGGACGTAAAGACAACGTTATCGGAAACATCACGGTGGGTCGAT
TTTGGGTCACACTTGCCTGGTCTGATGCAGCAAGGCTGAGTCTTAACGGA
AGGAAAGTTTCCGTTTGTTTACTTCGAAGTATGTGGGTATTTGGAGCTTC
GTGGAGCGCACATCCGTTATAAGTATATCATCGCGAACCGAATCTTTTGT
TTCTTCTTGCATGTGCTCACTTCATCGGATGTTTGCCTTTTACACCGCAC
CCAGGTAGCGTTTCGTATCCATTGCCGGCGTCATCCGTAATGTTCAGAAT
ATCGACAATGATGCAAACATTGTTTGTTATTGTTGATTCTCACATTATCT
CATCGCCAAAATCTAGCCAGTGGTCACAAAAAGTGCTGAGCCCTAGGAAG
ATAAAAAAAAACAGAAAGAAACTACAAGGGAATACCCAAGAAAGACCGAA
GAAGATACTCCTTCCTACTACGCGGTGTGCATCACTGAACTACAGCAGTC
ACAGCAGTACCAACAGCAAACGTACTTCCAGCGTCGTTCATTTGACTACA
ACATCGTGTTCAGTCTCCTCCCGCCCCACTCATAACCAATAACCACTGCT
GCTACAAGCAGTCAGTAGGTAGCTGCAGACTACAGCAATTAGTTGTTGTC
TGGAGTGCTGCCTGCAACGTACAAGTAGCCCCGGCAATCGGAGAAGACAG
AAAAAGAAAAAACACAAAAACACACACGTATCATCAGATATTTGTCGAGG
ACGGTGTCTCCATGCCGTCCTTGCGACGCTGGTGATGATGTCGCCCTCAA
CATGTCCTCCTTGTCTGGGTCCACGTTGCTGTCGGCGTTGCCCGAGGCCA
CATCACCAGCACCATGCTCTCGTAACGCTTCTTCACTGCCGGCGTTGCCT
TAGGTCACCTCCATCACCGCCGCTCTCTCACACAACAGCTCTTTTGTTGT
TCCTTTCCAATCAGTTCCCTAAAAAACTCCGATGTGCACTTGAGGTATGT
ACAAGTCTTCTGAAAAAAAAGTTCACGCTCGGAGTGAGATCGACCAAGCT
CTTCCCCGTCGTCGCTGCTCGTCTACCTCCGTCCTTGGCTGCGAAACTGG
TTACTGGACGGCACAACCCCTCTGTGCACCCTAGATCGTACCGTCTTTTC
ACCTGTGGTGTCGCCTGCCTCCGCGCACAAATGCTTGTGATGTACATTGC
TGTACTGCCGCTGTAACCAAAAGGCCCGCGAATCAGTACTATTGCACCTG
GCACACCAATTGCGACCCAACTCTACCGCCACGCCCGTGGCGTTCAACCA
CAGCGCAGCAGCTAGAAGGTATCACTCCTTGAGGGTGAGTCCGGCCTTAC
ACCCGCCAGAAAGATCCCCCCGACTCGCTTTGGGTCATGCTTACAGCAGA
CCTTGCCTTGGCAGCGAGGCAACGGAGAGTTTTCAATAATAGTATGCGTG
CTCACCCACCGCCCCTCGCACGCACGGTGCAAATTATTCCGTCTTTGTAC
TCTATAATTTTCCCTCAAATTGTTTTCACGACGATGAAAACTTGGTCAGG
TTACGAACGACACGAGCTTGGAGGAAGCAAGGGCTATTATCGGGCCCCTT
TTGCGCCCTGCAGATCGCACCTACGGCTTCCTGTCGATAACGGGTGGCGT
CGTCCCTCCCGAGGACGAACAAGCACGCAGAGTGGTCTGGGACTGCAAAA
TCCCAGTTCAGTTACGCCCGGCGAGTTGGGTGGCGATCGGGCGCGCATAG
AACGCGAGGAATCTTATCATCGTTACACTCTCTGTAGGTTCAGAAGGTGC
AGCCGGGCAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig149:39794..44104-

>mRNA_P-littoralis_Contig149.12.2 ID=mRNA_P-littoralis_Contig149.12.2|Name=mRNA_P-littoralis_Contig149.12.2|organism=Pylaiella littoralis U1_48|type=CDS|length=672bp|location=Sequence derived from alignment at P-littoralis_Contig149:39794..44104- (Pylaiella littoralis U1_48)
ATGCTTCTCTCCAACTGTGGCCTGCTGTGCCTTGACATCTCCAACAACCG
TCTCGGGGCTGCGGGAATAGAGGCCATAGCAATTGCCGTCGCCAGGAACA
CAACGTTGCTGGAGTTGGACTTATCGGGATGTGGGGGAACAGAATCCTCG
TTTCGAGCAGTGGCCGAGTCCGTGGAAGCGAACAAAACTCTCGGAGTGCT
ACTCTGTGCCGACAACCACCTGAGCACCGACTGCCTGGTTGAACTAGAAT
ATGCAATGGGTAGACCCAAGAAATCCGTTCGTGAGTTGGTGGGGCAGGTG
CAAAGGTCCATTGATAAACAGGACTCTCTGTCCAAGGGTGAGGGAACCAG
GCGTTCAACCAGCGTCGCAGGGCCCTCTCACGGAGAACCGTCCGTAACGC
TGGCCTCCGGGCAAGAAACGAGTATTCAGGTGTCCTTCGGACGTAAAGAC
AACGTTATCGGAAACATCACGGTTACGAACGACACGAGCTTGGAGGAAGC
AAGGGCTATTATCGGGCCCCTTTTGCGCCCTGCAGATCGCACCTACGGCT
TCCTGTCGATAACGGGTGGCGTCGTCCCTCCCGAGGACGAACAAGCACGC
AGAGTGGTCTGGGACTGCAAAATCCCAGTTCAGTTACGCCCGGCGAGTTG
GGTGGCGATCGGGCGCGCATAG
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