mRNA_P-littoralis_Contig1482.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1482.1.1
Unique NamemRNA_P-littoralis_Contig1482.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1482.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1482contigP-littoralis_Contig1482:7708..9113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size650
Hectar predicted targeting categoryother localisation
Exons2
Cds size648
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789701.9730585-CDS-P-littoralis_Contig1482:7707..77851680789701.9730585-CDS-P-littoralis_Contig1482:7707..7785Pylaiella littoralis U1_48CDSP-littoralis_Contig1482 7708..7785 +
1680789701.9822218-CDS-P-littoralis_Contig1482:8541..91111680789701.9822218-CDS-P-littoralis_Contig1482:8541..9111Pylaiella littoralis U1_48CDSP-littoralis_Contig1482 8542..9111 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1482.1.1prot_P-littoralis_Contig1482.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1482 7708..9111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1482.1.1

>prot_P-littoralis_Contig1482.1.1 ID=prot_P-littoralis_Contig1482.1.1|Name=mRNA_P-littoralis_Contig1482.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=216bp
KSWPFSKEEKIAIFKIISDKLGAQIHSKEFAFSRQHGFNTWHTRVGVPVM
QLLKKNPAYMAEHGHDYKERFAPSEMRHLRNWWKEQKKADGKLRQKAGTG
GSGGKPLEKLSHFQTLRRDCFQSNDACNRRDLMKETFNLSAAGGSASAGA
RSSAASGTVDLTGAGAGAAPMWTPVEGPGSAKSRRRGKARRRRSLQARAT
AVAAEGKIKSRPLAGG
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mRNA from alignment at P-littoralis_Contig1482:7708..9113+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1482.1.1 ID=mRNA_P-littoralis_Contig1482.1.1|Name=mRNA_P-littoralis_Contig1482.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1406bp|location=Sequence derived from alignment at P-littoralis_Contig1482:7708..9113+ (Pylaiella littoralis U1_48)
AAATCTTGGCCCTTCAGCAAGGAGGAAAAGATCGCCATCTTCAAGATTAT
TTCGGACAAGTTGGGAGCACAAATTCACGTGAGTCATGCCCTTCGGTTGT
TCTTATGAGGTTGTTGTGCGATTGTTGTAGGGCTTGGCGCGATGTAGGTT
ATTTCTGTCGGGATATGTCAACAGCAATATGCCTCTTTGTTGCGCTGGTG
TAGGGTCACCGATAAGTAAGTGAAATACCCATGTTTCAAAAGCCCCCCCC
CCCCGATTGTGTATCTGAGTATCACTGTGGCGAGCACCACCGGGTCTCTT
GTTTGTGATTTGTACTTACCAATCATCCTCAGAACCCTTGTGCAGTTCGT
CGACTCGCGATTGGTGCTCAACGTGCCCTGGTTCGTGGTAAACCATACTT
CGAAATATAATGTTACGTCGAGTGCGACCTCGGAACATTGGAAGGGTTAA
TGTTTCCCTTCCACGACCGTCGTTGTGTGTGGTCTGTTTCCAACACTCGT
TTAAATTAAGAAATGTAGGACCTCCAAAAAATCTTCCCATGAAGTATAAC
GTCGTGTTGACACGGCATTTCGCCCGACGCCTTAGTTGTGGGCGTCTCCC
CTTGCATGTAGACGGTTCGGTTACTTTTTATCCCGATCCGTTGAGCACTC
CTTCAACAAGATCCAGCATTCACATTACAAGAGGTCCTATCACGCACCCC
AAACAACAAACAACAATGCGCACGTGACAGACAGCACTGTCACCCCTTTG
TATCCCACTCGGAACCATATTTACTTACTTGCCCTCGCTGGTCGACACAT
CCCCCCCCCGCTTGCCAACATGTGATCTTCGCAGAGCAAGGAGTTCGCGT
TCTCCAGGCAGCACGGGTTCAACACTTGGCACACCCGTGTCGGAGTCCCC
GTCATGCAGCTGTTGAAGAAGAACCCCGCCTACATGGCTGAGCATGGGCA
TGACTACAAAGAGCGGTTTGCGCCGTCGGAAATGCGTCATCTTCGAAACT
GGTGGAAAGAGCAGAAGAAGGCCGACGGGAAACTCCGCCAGAAAGCCGGG
ACAGGTGGCAGCGGGGGTAAACCGCTGGAGAAGCTGAGTCACTTCCAGAC
CCTCCGGAGAGACTGCTTTCAAAGCAACGACGCCTGCAATCGGCGAGATC
TGATGAAAGAGACTTTCAACTTAAGTGCAGCAGGGGGCTCGGCGAGCGCC
GGCGCACGTTCCTCCGCTGCCTCGGGAACCGTCGACTTGACCGGTGCGGG
TGCCGGGGCCGCGCCGATGTGGACACCCGTGGAGGGGCCGGGAAGCGCAA
AAAGCCGACGAAGGGGAAAAGCAAGAAGGCGTCGAAGTCTCCAGGCGAGG
GCGACGGCAGTGGCGGCAGAGGGAAAGATAAAGTCGCGGCCTCTGGCGGG
GGGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1482:7708..9113+

>mRNA_P-littoralis_Contig1482.1.1 ID=mRNA_P-littoralis_Contig1482.1.1|Name=mRNA_P-littoralis_Contig1482.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=648bp|location=Sequence derived from alignment at P-littoralis_Contig1482:7708..9113+ (Pylaiella littoralis U1_48)
AAATCTTGGCCCTTCAGCAAGGAGGAAAAGATCGCCATCTTCAAGATTAT
TTCGGACAAGTTGGGAGCACAAATTCACAGCAAGGAGTTCGCGTTCTCCA
GGCAGCACGGGTTCAACACTTGGCACACCCGTGTCGGAGTCCCCGTCATG
CAGCTGTTGAAGAAGAACCCCGCCTACATGGCTGAGCATGGGCATGACTA
CAAAGAGCGGTTTGCGCCGTCGGAAATGCGTCATCTTCGAAACTGGTGGA
AAGAGCAGAAGAAGGCCGACGGGAAACTCCGCCAGAAAGCCGGGACAGGT
GGCAGCGGGGGTAAACCGCTGGAGAAGCTGAGTCACTTCCAGACCCTCCG
GAGAGACTGCTTTCAAAGCAACGACGCCTGCAATCGGCGAGATCTGATGA
AAGAGACTTTCAACTTAAGTGCAGCAGGGGGCTCGGCGAGCGCCGGCGCA
CGTTCCTCCGCTGCCTCGGGAACCGTCGACTTGACCGGTGCGGGTGCCGG
GGCCGCGCCGATGTGGACACCCGTGGAGGGGCCGGGAAGCGCAAAAAGCC
GACGAAGGGGAAAAGCAAGAAGGCGTCGAAGTCTCCAGGCGAGGGCGACG
GCAGTGGCGGCAGAGGGAAAGATAAAGTCGCGGCCTCTGGCGGGGGGA
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