mRNA_P-littoralis_Contig148.73.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig148.73.1
Unique NamemRNA_P-littoralis_Contig148.73.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig148.73.1 vs. uniprot
Match: D7G7T3_ECTSI (GDSL-lilke lipase/acylhydrolase family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7T3_ECTSI)

HSP 1 Score: 488 bits (1255), Expect = 2.150e-169
Identity = 243/299 (81.27%), Postives = 270/299 (90.30%), Query Frame = 1 
Query:  307 MESPDLNIALVGDSVLDDHYWLDRPADDVRAQTERTLKLAHPERSVLVHNFAVDESTISCVLRGRAPAAHYRNGRKEAKMEPYPVGEDGVVRPLELLRKAKPTHVVLSIGGNDARMRFLESRNPDVITSLMINDGFVANLRQVIETIREEITPNIILVYVFMPEFKMVPLLSLLPPARILQHLLVNFSKLFTELAVEHCLPIIDLSRTFDPNNKSHYGSTPIEPSNVSGQFIADLIAQVLAQFRFGEETTGKIFSGVGNDFRVQDLGPDASPSFSYERDLQAFFDRKSAEKPS-SCVVG 1200
            M++ DLN+ALVGDSVLDDHYWLD P +DVRAQTERTLK+A+P+RS+ V NFAVDESTISCVLRGRAPAAHYRNGR++AKMEPYPV EDGVVRPL+LLR+AKPTHVVLSIGGNDAR+RFL+SRNPDV+T LMI DGFVANLR+V+ETIR EITPNIILVYV+MPEFK  PLLS+LPPARILQ LLVNFSK F ELAVE  LPIIDLSRTFDPNNK HYGSTPIEPSNVSGQFIADL+AQVLA+FRFGEE  GKIFSG G +  V DL PDA+  FSY R+LQAFFDRK+AEKP+ SCV+G
Sbjct:    1 MDTSDLNVALVGDSVLDDHYWLDHPPNDVRAQTERTLKIAYPDRSIRVDNFAVDESTISCVLRGRAPAAHYRNGRRKAKMEPYPVEEDGVVRPLKLLREAKPTHVVLSIGGNDARIRFLQSRNPDVVTELMITDGFVANLRRVVETIRAEITPNIILVYVYMPEFKTFPLLSMLPPARILQRLLVNFSKFFIELAVEFHLPIIDLSRTFDPNNKKHYGSTPIEPSNVSGQFIADLVAQVLARFRFGEEAGGKIFSGTGGELVVHDLAPDAAARFSYGRELQAFFDRKAAEKPATSCVIG 299
[Close]
BLAST of mRNA_P-littoralis_Contig148.73.1 vs. uniprot
Match: A0A7S2TYU9_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TYU9_9EUKA)

HSP 1 Score: 201 bits (510), Expect = 5.350e-57
Identity = 121/298 (40.60%), Postives = 173/298 (58.05%), Query Frame = 1 
Query:  325 NIALVGDSVLDDHYWLDRPADDVRAQTERTLKLAHPERSVLVHNFAVDESTISCVLRGRAPAAHYRNGRKEAKMEPYPVGEDGVVRPLELLRKAK-PTHVVLSIGGNDARMRFLESRNPDVITSLMINDGFVANLRQVIETIREEITPNIILVYVFMPEFKMVPLLSLLPPARILQHLLVNFSKLFTELAVEHCLPIIDLSRTFDPNNKSHYGSTPIEPSNVSGQFIADLIAQVLAQFRFGEETTGKIFSG-VGND-----FRVQDLGPDASPSFSYERDLQAFFDRKSAEKPSSCVV 1197
            ++ L+GDSVLD  YWL     DVR + ER LK  + +      N+AVDES I  VL G  P   Y   R+  KMEPYP+ + GVVRPL LLR+ K PTHV+LS+GGNDAR  F+ S + D I   M+ +G +    +++  I+  + PN+ILV V+ P+    P + +LP A  +  L+V FS +F ++A +  LP+IDL+RTF+P + + YGS+PIEPSN SG  IA+L   ++  F F ++   K+++G VG D      +V+ L         Y   L+          PSSCV+
Sbjct:   21 HVVLMGDSVLDTFYWLRDKKKDVRYEMERLLKEDNKDSKCT--NYAVDESQIDHVLVGICPNPGYVRSRRWNKMEPYPMDQRGVVRPLVLLRELKDPTHVLLSVGGNDARAAFVSSFDIDNIYITMVENGIIERFERLVAEIKN-VVPNLILVIVYHPQITACPFVYMLPKAATITELIVRFSPMFFDIAKKFKLPVIDLARTFNPYDSNDYGSSPIEPSNTSGIMIAELAKYIIHDFDFNKDDA-KVYTGLVGKDSGYRALKVERLDDSWKDLSKYRSSLRDHLADGRRNAPSSCVI 314
[Close]
BLAST of mRNA_P-littoralis_Contig148.73.1 vs. uniprot
Match: X6N473_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6N473_RETFI)

HSP 1 Score: 107 bits (266), Expect = 7.670e-22
Identity = 73/213 (34.27%), Postives = 110/213 (51.64%), Query Frame = 1 
Query:  454 NFAVDESTISCVLRGRAPAAHYRNGRKEAKMEPYPVGEDGVVRPLELLRKAKPTH--------------VVLSIGGNDARMRFLESRNPDVITSLMINDGFVANLRQVIETIREEITPNIILVYVFMPE---FKMVPLLSLLPPARILQHLLVNFSKLFTELAVEHCLPIIDLSRTFDPNNKSHYGSTPIEPSNVSGQFIADLIAQVLAQFRF 1041
            N A+DES IS ++ GR P  +  + R++ +M PYPV   G++ PL+LLR AK  +              V+LSIG ND R     ++   VI  L     F  N+ Q+++ I  ++  N+ILV  + P    FK +          +++   V        LA  + LP++DLSRT +P  ++HY  TP +PSN S + IADLIA +L  + F
Sbjct:    2 NLALDESAISDIINGRKPDDNLVSAREKYQMCPYPVDNSGLLLPLKLLRDAKKNNKFKLFEEKNAISPVVILSIGANDVRKNLKYTKPDLVIEMLQKKVQFEENMEQIVKMIVNDLRFNLILVLAYEPHEDCFKEMLHFGREELLDVMEWTAVRM----LGLASRNGLPLMDLSRTLNPFERTHYSKTPFKPSNQSAEMIADLIAHILENYDF 210
[Close]
BLAST of mRNA_P-littoralis_Contig148.73.1 vs. uniprot
Match: X6P0L7_RETFI (Uncharacterized protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6P0L7_RETFI)

HSP 1 Score: 80.1 bits (196), Expect = 4.410e-14
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:  328 IALVGDSVLDDHYWLDRPADDVRAQTERTLKLAHPERSVLVHNFAVDESTISCVLRGRAPAAHYRNGRKEAKMEPYPVGEDGVVRPLELLR 600
            + L+GDSVLD+ +WLD  + D+    ++T      E    + N AVDESTI  VL+GR PA  Y NGRKE K++ YP    G V PL+ ++
Sbjct:   37 LVLMGDSVLDNFFWLDDKSTDLEKVLDKTF-----EEKADILNLAVDESTIKSVLKGRKPAIQYVNGRKENKLKAYPTQSSGKVEPLKNIK 122
[Close]
BLAST of mRNA_P-littoralis_Contig148.73.1 vs. uniprot
Match: A0A813EBC2_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EBC2_POLGL)

HSP 1 Score: 84.3 bits (207), Expect = 7.380e-14
Identity = 82/296 (27.70%), Postives = 130/296 (43.92%), Query Frame = 1 
Query:  301 QEMESPDLNIALVGDSVLDDHYWLDRPADDVRAQTERTLKLAHPER--SVLVHNFAVDESTISCVLRGRAP--------AAHYRNGRKEAKMEPYPVGEDGVVRPLELLRKAKPTH-VVLSIGGNDARMRFLESR-NPDVITSLM---------INDGFVANLRQVIETIREEITPNIILVYVFMPEFKMVPLLSLLP----------------PARI----LQHLLVNFSKLFTELAVEHCLPIIDLSRTFDPNNKSHYGSTPI-------------EPSNVSGQFIADLIAQVL 1026
            Q  ES    + L+GDSVLD+ YWL+ P   +R Q E  L+ +  ++  ++   N AVD+ T    +  +A         AA    G ++ + E Y VG+DG +R ++ L++ K     VLS+GGND    +L S+    ++TSL+         + + F   LR+ +  +R+      +++ +     K   LL   P                P  +    L  L+    K     A E    ++DLSRT DP  + HYG+  I             EPSN+S  FIA L+   +
Sbjct:   83 QAAESTRDQVVLLGDSVLDNFYWLEDPKQHLRVQLEEELRASRNQKIKALACVNLAVDQMTTFDFIERKAAQNPWEPFAAARKLVGFEDPQDEEYVVGKDGSIRSVKNLKRLKAVRWAVLSLGGNDV---YLNSQVQTSLLTSLLPPFKQKRVEVAEAFGQRLRKAVAELRKAAPEAALVLVIPYQPHKDFSLLLGAPINAEGERIAGDFTGDIPRNLERQNLSDLVTPMIKEILATAREVGCAVVDLSRTLDPECEEHYGTGEIGRVNALGAPWSGAEPSNLSSGFIAKLLVHAI 375
[Close]
BLAST of mRNA_P-littoralis_Contig148.73.1 vs. uniprot
Match: A0A1Q9EC56_SYMMI (Uncharacterized protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EC56_SYMMI)

HSP 1 Score: 78.6 bits (192), Expect = 4.480e-12
Identity = 90/300 (30.00%), Postives = 145/300 (48.33%), Query Frame = 1 
Query:  337 VGDSVLDDHYWLDRPADDVRAQTERTLKLAHPE--RSVLVHNFAVDESTISCVLRGRAPAAH----YRNGRKEAKMEP-----YPVGEDGVVRPLELLRKAKPTH-VVLSIGGNDARMRFLESRNPDVITSLM---------INDGFVANLRQVIETIREEITP-NIILVYVFMP--EFKMV---PLLS---------LLPPARILQHLLVN--FSKLFTE---LAVEHCLPIIDLSRTFDPNNKSHYGSTPI-------------EPSNVSGQFIADLIAQVLAQFRFGEETTGKIFSG 1074
            +GDSVLD+ +WL+ P+  +R Q + TL  +     R + V N AVD+ T +     R+ +A+    Y   R++   E      Y V +DG++R ++ L+       V+LS+GGND  +         +I SL+         +   F A L++V E +++      ++LV  + P  EF ++   P+           L   AR L+  L+    + + TE   LA +   P+IDLS+TFD + + HYG+  I             EPS+VS  FIA LIA  +AQ   G++T   ++SG
Sbjct:    1 MGDSVLDNFFWLETPSRPLRVQLQETLGKSRDAKVRQLQVVNLAVDQMT-TFDFEERSASANPWDVYAQAREKVDFEAEEDKKYMVDQDGIIRSVKNLKSLNNVRWVILSLGGNDVYLN--SGVKTRLINSLVPGSEGVRKEVAKEFGARLKKVAEQVQKAAPDATLVLVVPYQPHEEFSLLAGAPINDEGARIYGDFLGDGARGLERQLLPDLVTPMVTEILTLAQDLDCPVIDLSQTFDSSMEEHYGTGEIGRVNSLGTPWSGAEPSDVSSNFIAQLIANAIAQ---GKKTV--LYSG 292
[Close]
BLAST of mRNA_P-littoralis_Contig148.73.1 vs. uniprot
Match: A0A813EV29_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EV29_POLGL)

HSP 1 Score: 72.0 bits (175), Expect = 1.480e-9
Identity = 73/258 (28.29%), Postives = 117/258 (45.35%), Query Frame = 1 
Query:  328 IALVGDSVLDDHYWLDRPADDVRAQTERTLKLAHPER--SVLVHNFAVDESTISCVLRGRA---PAAHYRNGRK-----EAKMEPYPVGEDGVVRPLELLRKAKPTH-VVLSIGGNDARMRFLESR-NPDVITSLM---------INDGFVANLRQVIETIREEITPNIILVYVFMPEFKMVPLLSLLPP---------------ARILQHLLVNFSKLFTEL-------AVEHCLPIIDLSRTFDPNNKSHYGSTPI 972
            + L+GDSVLD+ YWL+ P   +R Q E  L+ +  ++  ++   N AVD+ T    +  +    P   Y   RK     + + E Y VG+DG +R ++ L++ K     VLS+GGND    +L S+    ++TSL+         + + F   LR+ +  +R+      +++ +     K   LL   P                AR L+    N S L T +       A E    ++DLSRT DP  + HYG+  I
Sbjct:  986 VVLLGDSVLDNFYWLEDPKQHLRVQLEEELRASRNQKIKALACVNLAVDQMTTFDFIERKTTQNPWEPYAAARKLVGFEDPQDEEYVVGKDGSIRSVKNLKRLKAVRWAVLSLGGNDV---YLNSQVQTSLLTSLLPPFKQKRVEVAEAFGQRLRKAVAELRKAAPEAALVLVIPYQPHKDFSLLLGAPINADGERIAGDFTGDIARNLER--QNLSDLVTPMIKEILATAREVGCAVVDLSRTLDPECEEHYGTGEI 1238
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G7T3_ECTSI2.150e-16981.27GDSL-lilke lipase/acylhydrolase family protein n=2... [more]
A0A7S2TYU9_9EUKA5.350e-5740.60Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
X6N473_RETFI7.670e-2234.27Uncharacterized protein n=1 Tax=Reticulomyxa filos... [more]
X6P0L7_RETFI4.410e-1443.96Uncharacterized protein (Fragment) n=1 Tax=Reticul... [more]
A0A813EBC2_POLGL7.380e-1427.70Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A1Q9EC56_SYMMI4.480e-1230.00Uncharacterized protein n=3 Tax=Symbiodinium TaxID... [more]
A0A813EV29_POLGL1.480e-928.29Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig148contigP-littoralis_Contig148:295927..300527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G7T3
Model size1447
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue2.8e-172
EggNOG OGs2CBI1@1|root,2SQ5S@2759|Eukaryota
Ec32 ortholog descriptionSGNH hydrolase-type esterase domain
Ec32 orthologEc-06_000380.1
Cds size897
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig148.73.1prot_P-littoralis_Contig148.73.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig148 296233..300283 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789699.3139114-UTR-P-littoralis_Contig148:295926..2962321680789699.3139114-UTR-P-littoralis_Contig148:295926..296232Pylaiella littoralis U1_48UTRP-littoralis_Contig148 295927..296232 +
1680789699.4031625-UTR-P-littoralis_Contig148:300283..3005271680789699.4031625-UTR-P-littoralis_Contig148:300283..300527Pylaiella littoralis U1_48UTRP-littoralis_Contig148 300284..300527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789699.327134-CDS-P-littoralis_Contig148:296232..2964371680789699.327134-CDS-P-littoralis_Contig148:296232..296437Pylaiella littoralis U1_48CDSP-littoralis_Contig148 296233..296437 +
1680789699.3501394-CDS-P-littoralis_Contig148:297542..2976521680789699.3501394-CDS-P-littoralis_Contig148:297542..297652Pylaiella littoralis U1_48CDSP-littoralis_Contig148 297543..297652 +
1680789699.3590424-CDS-P-littoralis_Contig148:298493..2986571680789699.3590424-CDS-P-littoralis_Contig148:298493..298657Pylaiella littoralis U1_48CDSP-littoralis_Contig148 298494..298657 +
1680789699.3695598-CDS-P-littoralis_Contig148:299027..2991271680789699.3695598-CDS-P-littoralis_Contig148:299027..299127Pylaiella littoralis U1_48CDSP-littoralis_Contig148 299028..299127 +
1680789699.3846211-CDS-P-littoralis_Contig148:299600..2997351680789699.3846211-CDS-P-littoralis_Contig148:299600..299735Pylaiella littoralis U1_48CDSP-littoralis_Contig148 299601..299735 +
1680789699.3936355-CDS-P-littoralis_Contig148:300100..3002831680789699.3936355-CDS-P-littoralis_Contig148:300100..300283Pylaiella littoralis U1_48CDSP-littoralis_Contig148 300101..300283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig148.73.1

>prot_P-littoralis_Contig148.73.1 ID=prot_P-littoralis_Contig148.73.1|Name=mRNA_P-littoralis_Contig148.73.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=299bp
MESPDLNIALVGDSVLDDHYWLDRPADDVRAQTERTLKLAHPERSVLVHN
FAVDESTISCVLRGRAPAAHYRNGRKEAKMEPYPVGEDGVVRPLELLRKA
KPTHVVLSIGGNDARMRFLESRNPDVITSLMINDGFVANLRQVIETIREE
ITPNIILVYVFMPEFKMVPLLSLLPPARILQHLLVNFSKLFTELAVEHCL
PIIDLSRTFDPNNKSHYGSTPIEPSNVSGQFIADLIAQVLAQFRFGEETT
GKIFSGVGNDFRVQDLGPDASPSFSYERDLQAFFDRKSAEKPSSCVVG*
back to top

mRNA from alignment at P-littoralis_Contig148:295927..300527+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig148.73.1 ID=mRNA_P-littoralis_Contig148.73.1|Name=mRNA_P-littoralis_Contig148.73.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4601bp|location=Sequence derived from alignment at P-littoralis_Contig148:295927..300527+ (Pylaiella littoralis U1_48)
CGAGTCCACAGCGGTAGTAAGATTTCTGGCCTTCCCGCAAGCGAGAGGAT
AGCTAGAGTCTAGAGACACAGAACACGGCACCCTCCTGACTAACAGCACT
TCCCCCTCGCGCAATGAACAGCATTCGCTGATCAACAATATACCAGCTTT
TGTTTCGCGATTCGTCCACACGGAAGGCGAAAAGGGTGCGTTTTTTGAGA
CGCTGTGTTGTTGATTCTTCACATCTGTCTACAATAGGCACGCGTAAAAC
AACCCGTCTCCCTCAGACATCACAGATATTGCAAGGAAGGGTACTCGTAG
CAGGAGATGGAATCGCCCGACCTCAACATTGCGCTCGTCGGAGACAGCGT
CCTAGACGATCACTACTGGCTTGACCGACCGGCGGATGACGTTCGCGCTC
AAACGGAGCGGACTCTCAAGCTTGCCCACCCGGAACGGAGCGTCCTAGTG
CACAATTTTGCTGTCGACGAATCAACGATCTCTTGTGTCTTACGCGGACG
CGCCCCAGCAGGTGTGAGACACGTTTGTACATACTTCGAAGTATCATACA
CGAGATAAGCTACACAGTTTGGAGGCCCATCTTCAAAATCAGATGTCTGC
GTTTGTGCGAGCTCTCCGATAGCGATACTGCTGTGTACCGGTATGTAGGC
GATTTAGCGTGATCCTGGATTCCATGCCGTCGTGCTCATCGATCCTTAGA
CCCTTTGATACATTCGCACAGAAATTCGCCGAATATCATTGTTTTCTCAC
ACGCGGTAATTAATCTGTACACAACGACGCTGGACTCGTACCGGTGGTCT
AGCACCATCTCAGCATTTATTATGGAGGTGACAATATTCGAAATTCGTCA
AAACGCTCTAGTTTATCGAAATCCTGATCAGAACTTGCAGCCAGAGGATC
TTCGTACAATATATGTCGTGCTCGGTGGTGTGGTGAGAGATCCCCCCCCC
CCATTATTTCCTCTTCCTTTTTGCCGCGGTGGAAATGGTCTGCGGCTACA
CCGCTGTAGCAACAGCTGTTACGGACAAGCCAAACTTGCGCCATGAAACC
TGAATGTAGAGAGCTTGTAGAGGGCTCCGAGCAACCCCTGGGTAACTCTG
CCCAGACCTCGGCCGCTGCTTTACGGTGGAAGCGTACCAGACGTACGTGA
AAAATATGTACAGCAGTACTGCGTATATTTCGTACACTTCGGTATCGGAT
CCTTCACTGTAAAGGTCACGTGCGTTTGTTTACAGCCGACAGCCGTCCAT
GCAGAGGCTCAGGCGAGGCTAGACTTCACCACAGCCACAGTCTCGTTGCC
TACACCACCCTCCATATGATACGCATAATTTTTTGGCTGTCACCTCCATT
CACTGCTCTCATCGTTCGGGTGTTGAGTTCGAGGTGGGGTTATTCGATCG
ACAGCAGCAGCATCGCTGTGTTTCGGGTGTGTTCTACTGCTGATGCCGTA
GAACCATTTTTTCGAGCCGCAGAACAAGTTATGTATCCTCGAGTAAAAAA
AGGGCCAGATTGTTCTGTCGATTGGCTGTTCAAACAACGAACGACGCTTC
TCTCTGCCGATTGAACGAGCCCACCTCTTGATGTTGTTGAGTGCCCCGCT
TGCGTGGTTTGACCAGCCCACTACAGAAATGGCCGAAAAGAGGCAAAGAT
GGAGCCGTATCCTGTGGGTGAGGATGGCGTGGTCAGGCCGTTGGAGCTTT
TGCGAAAGGCCAAGCCCACACACGTGGTGAGCGCCGCCGCCGACATTGAC
GCATCTCCGTCATCTCGACCGTATGTAAAAGCCAAGGTGACGGCATCCAT
CCGTACCCCTGCTCACGCCCACCCCCATCGACCTTGGATGATAACCCCGT
CATCCGAGAAACTCCACCGGATCGATTTAATTTTCGCCCCAAGGCGTATT
GACCAACCAGGAAACTGGGTGCCACTCTACTGTACTGACAGTAAGAGAGA
GCACGGGATCCGAATACTTTTGTTTTCTGTCACTCGGCATGTAGGAAGAG
CACTACCAACGCTGCCACCACCGCTAGGACCCAAGCCTTCACCAACCAAA
CTTTATCGTTTGACCTGTAGAAAATGTACCGCTACAGCAGTGGCACGGTG
AATTGGACGCCAGTGAAGGAAGGAGAAACTGCCCGTTGAGGCCACAAACA
TGGGGACCAGCACAACAAGTGCAGTCTGAAAAAACAAAAATACCAGAAAA
GTTTCGTGTCTTCTCTGGCACACTTGTGAGTGTCGTCGCTGCTGGCAAGT
CTAGGCGATGGCGCGTCCGTTTTCGCCGGCATAGATAGGTCAAGTCAAAG
TCTGTGTTCGCCGCGTCAACATCGCAGGTCGAAAGGTTCGGCGATCACTA
TGATAAGCAGCACATGTGCCGGATGGTGTACTGGAAAATCACAAGCTGCA
CGAAGCGTATCGTTTGACGCGTATCACGTTTTGTCTGTCAACAACCACGG
TAAACATTGCTGCGCAGAGTAAGTTCCCACTTTTCACCAGCAGGACGCCC
TATGGTGCTCCCGCCGTATTACTGGTACTGTTCTGCTTGCTGGTACTTCA
CGGGCTTTGCGTGACAGGTGCTGAGTATCGGAGGCAATGATGCGCGTATG
CGATTCCTGGAGTCCCGCAACCCGGACGTCATCACATCCCTCATGATCAA
CGATGGCTTCGTGGCCAACCTCCGCCAAGTGATCGAGACCATTCGAGAGG
AGATAACACCGAACATCATTCTCGTCTACGTGTGAGTGTCGGTACACCAC
GTATATTTCAATATTGCAGGGCAGGGACGACGTAGACGGCTCTTGCGTGG
GTGTTTCGTTCTCGCAGAGACCGCGCACAATTCCAGGCTGTCCTTCACAA
CAACAGGCAGTACTGTACTTGTCTGATGTGTCCATTTTTTGGGAAATCTT
TCTTTGCCCCTTGCTCCTTAATTTTGGCCACCAAGGACTTTTCTCCTTGA
CTGTCGCAGTAGCGGTAAGACGTCCCATTCCCATGTCTTCGTTGTCGCTC
CGCACCGAAACACAACGAGGGCAGTCTGACATCAACGCCTGCTACTGTAG
CGCCCCGGGATGAACAATGCGTGCGTTTATACTCCCGTTGTCTCGTCGCA
GGTTCATGCCTGAGTTCAAGATGGTCCCTTTACTTAGCCTGCTGCCACCC
GCACGTATCTTGCAACATCTCCTGGTCAACTTTTCCAAGCTCTTCACTGA
GGTATCCATTTATTTACGTAGGCACTTCGAAGTACGTCTGTGTTGACGCA
TCGTACGAATGTGTACATCATAGACGTGTGATTTTCCCGCCTTGTTTTGT
GTGAGGCAGAGAGAGATAAAGTCCATGCTCTCGCTCACACGTCAGCTCAA
GAAAAAGGGATTGCCACAAGCAAGCACAGGTCACAAGCGGTCAAGCGGCT
TATTTTCACTCCTGCGAACAAAGCACAAGCGCGCACCGCAAGCAAAGGTA
AAGCAGCTCCCCGAAACTTCCGAATCCGCCACAACGCAGCCGAACACGTT
TCGGTACATTTCACATAGTTTTCAAGTGGAATCGCCACACGGACAGTAGT
TCACCATGGCGCGGGCAGATAGGTTGTTTGAGATTCGAAGTAATATTTTT
GTGCACTGATGTCGCATTGGAAATAAACAGCATGTCCTTCACAATGATGT
TGCTTGACCTGTGCTTTGGCGCAGCTGGCCGTAGAGCATTGCCTCCCAAT
CATCGACCTGTCGAGGACATTTGACCCGAACAACAAAAGCCACTACGGAT
CGACACCGATTGAGCCGTCGAATGTTTCGGGACAGTTCATCGCCGACCTC
ATCGCCCAGGTAGGAAGGAAGGCGCACTGTAGCTGTTGCTCAGCTCGAAC
CACTTGTGGGACACGGCATCGCTGTAAACATCAAGGTCGAAACACACGGT
AACGATGATTGGCGTGTTTCAGCAGGTATTCTGGCAACTCTATGTCGAGC
GTGCAAGAGCATGGCCTCAGTGACTCATCACTCGTACCGGGTAAGCATGT
TGGCCCGTGTACAGTTCGTGAAAAAGAAGCTACCCATCACACAACGTACC
TGTTACGCGTGTCGGCCCGTATCCTTGGAAATGAGCATAAGTAAGACTGG
ATTTGAGCTGGTGGCTAAACGGTGGGCATCCTTTCTTTCTCTTGGTTGCG
TGCGTGTGTCGTATCTTCGGACAGGTGCTGGCGCAGTTCCGGTTCGGTGA
AGAGACCACCGGAAAAATCTTTTCCGGCGTTGGGAACGATTTTAGGGTGC
AGGACCTGGGCCCAGATGCCTCCCCGAGCTTTTCGTACGAGCGAGACCTG
CAGGCATTTTTCGATCGCAAAAGCGCAGAGAAGCCCAGCTCCTGTGTTGT
TGGGTAGCTGGCAGTGCCCGGAAAGCACGGCTGAAGATGTGCAATAACTC
GTGTGGTGTTGGAGAAAGAGAGGTATTGTTTTCAAAAGAAACCATTATCG
TAGTTGTCAAGTGCTGATGCTTCCCAATTACCAGGTACGGAATACCAGGT
ATACTTCGTATCAGGTCGTATTTGAAGCGCGTTGCCGTCGAAAACAAGCA
ACTTCAGATTTACTTTGTACTGCAGTGGCGAAAAACAAGCCGAAAAACCC
C
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig148:295927..300527+

>mRNA_P-littoralis_Contig148.73.1 ID=mRNA_P-littoralis_Contig148.73.1|Name=mRNA_P-littoralis_Contig148.73.1|organism=Pylaiella littoralis U1_48|type=CDS|length=897bp|location=Sequence derived from alignment at P-littoralis_Contig148:295927..300527+ (Pylaiella littoralis U1_48)
ATGGAATCGCCCGACCTCAACATTGCGCTCGTCGGAGACAGCGTCCTAGA
CGATCACTACTGGCTTGACCGACCGGCGGATGACGTTCGCGCTCAAACGG
AGCGGACTCTCAAGCTTGCCCACCCGGAACGGAGCGTCCTAGTGCACAAT
TTTGCTGTCGACGAATCAACGATCTCTTGTGTCTTACGCGGACGCGCCCC
AGCAGCCCACTACAGAAATGGCCGAAAAGAGGCAAAGATGGAGCCGTATC
CTGTGGGTGAGGATGGCGTGGTCAGGCCGTTGGAGCTTTTGCGAAAGGCC
AAGCCCACACACGTGGTGCTGAGTATCGGAGGCAATGATGCGCGTATGCG
ATTCCTGGAGTCCCGCAACCCGGACGTCATCACATCCCTCATGATCAACG
ATGGCTTCGTGGCCAACCTCCGCCAAGTGATCGAGACCATTCGAGAGGAG
ATAACACCGAACATCATTCTCGTCTACGTGTTCATGCCTGAGTTCAAGAT
GGTCCCTTTACTTAGCCTGCTGCCACCCGCACGTATCTTGCAACATCTCC
TGGTCAACTTTTCCAAGCTCTTCACTGAGCTGGCCGTAGAGCATTGCCTC
CCAATCATCGACCTGTCGAGGACATTTGACCCGAACAACAAAAGCCACTA
CGGATCGACACCGATTGAGCCGTCGAATGTTTCGGGACAGTTCATCGCCG
ACCTCATCGCCCAGGTGCTGGCGCAGTTCCGGTTCGGTGAAGAGACCACC
GGAAAAATCTTTTCCGGCGTTGGGAACGATTTTAGGGTGCAGGACCTGGG
CCCAGATGCCTCCCCGAGCTTTTCGTACGAGCGAGACCTGCAGGCATTTT
TCGATCGCAAAAGCGCAGAGAAGCCCAGCTCCTGTGTTGTTGGGTAG
back to top