mRNA_P-littoralis_Contig1010.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1010.14.1
Unique NamemRNA_P-littoralis_Contig1010.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1010.14.1 vs. uniprot
Match: A0A6H5L7T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7T2_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.180e-7
Identity = 50/130 (38.46%), Postives = 63/130 (48.46%), Query Frame = 1 
Query:    1 QAGTTEGNDCTSVAVTPDGPALLVGWTDDDFLADATNYFTDFAGVMIETGGESSAGSTTFTPAPGASPSLTPAPFEAPSTPPETPAPESSXXXXXXGXXXXXXXSPSSCGATESFQITSDGLREIEGCFQ 390
            QAGTT       V V+PDG ALL G++   +    T+++ DFAGV+I TG                           P+TP   PA   +XXXXXX        S  SCG  ESF+ITSD L  +EGC+Q
Sbjct:  362 QAGTTGFETFVGVDVSPDGAALLAGYSTGTWEDSTTDFYADFAGVLIATGA-------------------------VPATP--APATVIAXXXXXXXTGTSGGTSEGSCGDGESFRITSDVLPVVEGCYQ 464
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1010.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7T2_9PHAE2.180e-738.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1010contigP-littoralis_Contig1010:67592..67985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size394
Hectar predicted targeting categoryother localisation
Exons1
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789353.6652691-CDS-P-littoralis_Contig1010:67592..679851680789353.6652691-CDS-P-littoralis_Contig1010:67592..67985Pylaiella littoralis U1_48CDSP-littoralis_Contig1010 67593..67985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1010.14.1prot_P-littoralis_Contig1010.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1010 67593..67985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1010.14.1

>prot_P-littoralis_Contig1010.14.1 ID=prot_P-littoralis_Contig1010.14.1|Name=mRNA_P-littoralis_Contig1010.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
QAGTTEGNDCTSVAVTPDGPALLVGWTDDDFLADATNYFTDFAGVMIETG
GESSAGSTTFTPAPGASPSLTPAPFEAPSTPPETPAPESSPPQPSAGTPQ
PVASSPSSCGATESFQITSDGLREIEGCFQA
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mRNA from alignment at P-littoralis_Contig1010:67592..67985-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1010.14.1 ID=mRNA_P-littoralis_Contig1010.14.1|Name=mRNA_P-littoralis_Contig1010.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=394bp|location=Sequence derived from alignment at P-littoralis_Contig1010:67592..67985- (Pylaiella littoralis U1_48)
CAGGCGGGAACAACGGAAGGCAACGACTGCACCAGTGTCGCCGTCACCCC
CGACGGGCCGGCGCTGCTCGTGGGTTGGACCGACGATGACTTTCTGGCGG
ACGCGACCAATTATTTTACTGATTTCGCCGGCGTGATGATCGAAACAGGC
GGCGAAAGTTCGGCAGGGTCGACCACGTTCACGCCCGCCCCCGGGGCCTC
ACCCAGCCTTACACCTGCTCCCTTTGAGGCCCCGTCAACACCACCTGAAA
CACCTGCTCCCGAGTCATCACCACCACAGCCCAGCGCTGGTACTCCCCAG
CCGGTTGCCTCTTCTCCGTCTTCTTGCGGGGCAACAGAATCGTTTCAGAT
CACGTCCGATGGCCTCCGCGAAATCGAGGGATGCTTCCAGGCGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1010:67592..67985-

>mRNA_P-littoralis_Contig1010.14.1 ID=mRNA_P-littoralis_Contig1010.14.1|Name=mRNA_P-littoralis_Contig1010.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig1010:67592..67985- (Pylaiella littoralis U1_48)
CAGGCGGGAACAACGGAAGGCAACGACTGCACCAGTGTCGCCGTCACCCC
CGACGGGCCGGCGCTGCTCGTGGGTTGGACCGACGATGACTTTCTGGCGG
ACGCGACCAATTATTTTACTGATTTCGCCGGCGTGATGATCGAAACAGGC
GGCGAAAGTTCGGCAGGGTCGACCACGTTCACGCCCGCCCCCGGGGCCTC
ACCCAGCCTTACACCTGCTCCCTTTGAGGCCCCGTCAACACCACCTGAAA
CACCTGCTCCCGAGTCATCACCACCACAGCCCAGCGCTGGTACTCCCCAG
CCGGTTGCCTCTTCTCCGTCTTCTTGCGGGGCAACAGAATCGTTTCAGAT
CACGTCCGATGGCCTCCGCGAAATCGAGGGATGCTTCCAGGCG
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