mRNA_P-littoralis_Contig1010.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1010.13.1
Unique NamemRNA_P-littoralis_Contig1010.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1010.13.1 vs. uniprot
Match: A0A6H5L7T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7T2_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.730e-10
Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:   13 GSNLEVWTVSGDTSYDQVAVIGYS---ADGNEQVDTPYNVTYITNNDDATTVYCYSSENAITVHPSDATWQCKI 225
            G   E +TVSG + ++ +A++G S   AD +  V  P+ + +++  DD T VYC S+E+A+TVHP DATW C +
Sbjct:  473 GDEYEEYTVSGMSGWEHIAILGMSSAFADDDGDVIMPFYLAFVSEEDDGTIVYCVSNEDAVTVHPVDATWTCDL 546
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BLAST of mRNA_P-littoralis_Contig1010.13.1 vs. uniprot
Match: A0A6H5JQX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQX7_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 4.310e-10
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    1 FSNLGSNLEVWTVSGDTSYDQVAVIGY-SADGNEQVD-TPYNVTYITNNDDATTVYCYSSENAITVHPSDATWQCKI 225
            FS   S  E W+++G+  ++ + V      D  E+ D TP+ + +++ +DDAT VYCYS+E  I VHP+DATWQ K+
Sbjct:  115 FSTPESTEEYWSLTGEAEFESILVASILDLDTEEEDDSTPWYLVFLSADDDATVVYCYSNEQGILVHPTDATWQSKM 191
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BLAST of mRNA_P-littoralis_Contig1010.13.1 vs. uniprot
Match: D7G0B7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B7_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 5.380e-9
Identity = 30/77 (38.96%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    1 FSNLGSNLEVWTVSGDTSYDQVAVIGY-SADGNEQVD-TPYNVTYITNNDDATTVYCYSSENAITVHPSDATWQCKI 225
            FS   S  E W+++G+  ++ + V      D  E+ D TP+ + +++ +DDAT +YCYS+E  I VHP+DATW+C +
Sbjct:  577 FSTPESTEEYWSLTGEAEFESILVGSILDEDTEEEGDSTPWYLIFLSEDDDATVLYCYSNEQGILVHPADATWRCDL 653
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BLAST of mRNA_P-littoralis_Contig1010.13.1 vs. uniprot
Match: A0A6H5JLC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLC2_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 9.990e-9
Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:    1 FSNLGSNLEVWTVSGDTSYDQVAVIGY-SADGNEQVD-TPYNVTYITNNDDATTVYCYSSENAITVHPSDATWQ 216
            FS   S  E W+++G+  ++ + V      D  E+ D TP+ + +++ +DDAT VYCYS+E  I VHP+DATWQ
Sbjct:  569 FSTPESTEEYWSLTGEAEFESILVASILDLDTEEEDDSTPWFLVFLSADDDATVVYCYSNEQGILVHPTDATWQ 642
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1010.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L7T2_9PHAE1.730e-1041.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQX7_9PHAE4.310e-1041.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0B7_ECTSI5.380e-938.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLC2_9PHAE9.990e-941.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1010contigP-littoralis_Contig1010:66887..67580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size238
Hectar predicted targeting categoryother localisation
Exons2
Cds size237
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789353.6295404-CDS-P-littoralis_Contig1010:66886..670181680789353.6295404-CDS-P-littoralis_Contig1010:66886..67018Pylaiella littoralis U1_48CDSP-littoralis_Contig1010 66887..67018 -
1680789353.638512-CDS-P-littoralis_Contig1010:67475..675801680789353.638512-CDS-P-littoralis_Contig1010:67475..67580Pylaiella littoralis U1_48CDSP-littoralis_Contig1010 67476..67580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1010.13.1prot_P-littoralis_Contig1010.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1010 66887..67580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1010.13.1

>prot_P-littoralis_Contig1010.13.1 ID=prot_P-littoralis_Contig1010.13.1|Name=mRNA_P-littoralis_Contig1010.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=79bp
FSNLGSNLEVWTVSGDTSYDQVAVIGYSADGNEQVDTPYNVTYITNNDDA
TTVYCYSSENAITVHPSDATWQCKIFCC*
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mRNA from alignment at P-littoralis_Contig1010:66887..67580-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1010.13.1 ID=mRNA_P-littoralis_Contig1010.13.1|Name=mRNA_P-littoralis_Contig1010.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=694bp|location=Sequence derived from alignment at P-littoralis_Contig1010:66887..67580- (Pylaiella littoralis U1_48)
TTTTCAAACTTGGGGTCCAACCTCGAAGTCTGGACGGTCAGCGGGGACAC
CTCATACGATCAGGTCGCAGTCATCGGTTACTCCGCTGACGGAAATGAAC
AAGTGGTGAGGGCGACTTGACGGTAACGTGGTTGGTGGGAGTTTCAGGCA
CTTGTGTCGGGAAGAGTGTAGGGCGGTTTTGAGCGATCGATATTTCTCGC
GCTCCCTCCAGCCATTGATCGTGTCTCTTTCGGGCATCTGAACGTCGGAG
GTGCCTGATACTTTCCTGCATCTCACGTGCGTGGTATTCGAATCGATAGA
TTACCCTAAGTCTTATTGTAGCCCTTGACATACCAGTGCCCTCGCACTCT
ATCCCCAACCGTGTACCAAACGTGTCTTCGGTGCCATGTTGCGGTTGGAC
TTCCATTCCGTATATTTCGTGCATTCATCTCGCAGTATCACCTCTTGAAA
TACCCACTATGACGAATCTGTCGGTGCCGCAAGTCATTTTCCTCACTCGA
CTCGAACCGTGTCCCACACACGTTCTCCCCCGACGTCGTTGTTATTCGTG
GTCGTATCGCAGGACACCCCCTACAACGTGACTTACATAACCAACAACGA
CGACGCCACTACCGTGTACTGCTATTCGAGCGAGAACGCCATCACGGTCC
ACCCAAGCGACGCCACATGGCAATGTAAGATTTTTTGTTGTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1010:66887..67580-

>mRNA_P-littoralis_Contig1010.13.1 ID=mRNA_P-littoralis_Contig1010.13.1|Name=mRNA_P-littoralis_Contig1010.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=237bp|location=Sequence derived from alignment at P-littoralis_Contig1010:66887..67580- (Pylaiella littoralis U1_48)
TTTTCAAACTTGGGGTCCAACCTCGAAGTCTGGACGGTCAGCGGGGACAC
CTCATACGATCAGGTCGCAGTCATCGGTTACTCCGCTGACGGAAATGAAC
AAGTGGACACCCCCTACAACGTGACTTACATAACCAACAACGACGACGCC
ACTACCGTGTACTGCTATTCGAGCGAGAACGCCATCACGGTCCACCCAAG
CGACGCCACATGGCAATGTAAGATTTTTTGTTGTTGA
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