mRNA_P-littoralis_Contig148.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig148.2.1
Unique NamemRNA_P-littoralis_Contig148.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig148.2.1 vs. uniprot
Match: B5LWL0_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWL0_9PHYC)

HSP 1 Score: 96.3 bits (238), Expect = 9.180e-18
Identity = 78/265 (29.43%), Postives = 122/265 (46.04%), Query Frame = 2 
Query:  440 ICSFCSGTGRHFKKNQSPLPTIALDGSGSVCAATTELLQSRADGLEVVRRTTIRAPSTQEKTAGFVRPINTPACPSAATADLLRTSG-DLRKTRRGKMADLFAEALNSDVYADDFKGLLGWKGKENQLTHPLTVRTIQDFIRSRMEVVDG--VKPYANVWVKSVYPVTKIKPGQMSS-----GIKVVAARMKHANGEPYVPPKTLHL-KKLWIRVHGQGSCFCINRGGHHESNSIYFEMGPDKCWQPCFCTDDTVGSSGKTCQNF 1207
            IC  C   G H + ++  +P   L G GS+  A  E L       E +R T+IR+  +   TAG+  P    A  +    + L+  G  L+    G    ++ EA+N++++  D  G+  WKG E  +T P T+  I   IR+   V     V+    + V      + +  G   S     G K +   M  AN  P    + L +  ++++RV G GS +C+N+G  H SNSI+F +  D     CF   D +G SGK C++F
Sbjct:  269 ICPACGDKGWHLE-DRFYMPAKVLHGDGSLAEADMEYLADNPH--ETMRWTSIRSRPSDRMTAGYTVPEGYTAPRTERPTNSLQILGAQLKSFSPG----IYREAVNAEIFGSDAAGIKTWKGCE--ITAPKTLNLIAHEIRNYATVYQDLVVRQAFEMRVAKAVATSVVSSGSTRSKRGRAGSKALE-NMAVANKVPGRERRVLEVVARIFVRVAGTGSLYCMNKGAEHTSNSIFFWISQDGIAHKCFSRKDVLGQSGKRCKDF 523
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BLAST of mRNA_P-littoralis_Contig148.2.1 vs. uniprot
Match: D8LP78_ECTSI (EsV-1-45 n=2 Tax=root TaxID=1 RepID=D8LP78_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 7.500e-14
Identity = 49/137 (35.77%), Postives = 73/137 (53.28%), Query Frame = 1 
Query:    1 ESTWTKRGFSLVFRHLYVTEEDALQLRHTVVCELDGQIGSLQCPEYHHQWSDAIAREVY*VYTIGMAMYGSIRSLPCTSCFPPEPIGGAEQGSLKELENEYVALRRRLHPMSAGFDYGSLSNVHTDEFKSTQFNQVY 411
            E+  TK G+  +F +L +    ALQLR++VV EL+  +G        + WSD I +  Y   T G+ M GS + + CT C   +P     +   K L +E   LR++++P   GFDY  LS++H+DEFK   F   Y
Sbjct:  125 ETMLTKNGYHAIFPNLRINLSQALQLRYSVVYELEKTLGPRTGSL--NPWSDVIDKAPY---TGGLKMCGSFKRVKCTDCKKTDP---TFKDKKKALLSEMAKLRKKIYPRQPGFDYTDLSDIHSDEFKDAVFGDKY 253
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
B5LWL0_9PHYC9.180e-1829.43Uncharacterized protein n=1 Tax=Feldmannia species... [more]
D8LP78_ECTSI7.500e-1435.77EsV-1-45 n=2 Tax=root TaxID=1 RepID=D8LP78_ECTSI[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig148contigP-littoralis_Contig148:3819..5097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1279
Hectar predicted targeting categoryother localisation
Exons1
Cds size552
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789696.7017405-CDS-P-littoralis_Contig148:3818..43701680789696.7017405-CDS-P-littoralis_Contig148:3818..4370Pylaiella littoralis U1_48CDSP-littoralis_Contig148 3819..4370 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789696.7135608-UTR-P-littoralis_Contig148:4370..50971680789696.7135608-UTR-P-littoralis_Contig148:4370..5097Pylaiella littoralis U1_48UTRP-littoralis_Contig148 4371..5097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig148.2.1prot_P-littoralis_Contig148.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig148 3819..4370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig148.2.1

>prot_P-littoralis_Contig148.2.1 ID=prot_P-littoralis_Contig148.2.1|Name=mRNA_P-littoralis_Contig148.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=184bp
MADLFAEALNSDVYADDFKGLLGWKGKENQLTHPLTVRTIQDFIRSRMEV
VDGVKPYANVWVKSVYPVTKIKPGQMSSGIKVVAARMKHANGEPYVPPKT
LHLKKLWIRVHGQGSCFCINRGGHHESNSIYFEMGPDKCWQPCFCTDDTV
GSSGKTCQNFSTGERGGKDLSSVLSKLFHSDPAK
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mRNA from alignment at P-littoralis_Contig148:3819..5097-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig148.2.1 ID=mRNA_P-littoralis_Contig148.2.1|Name=mRNA_P-littoralis_Contig148.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1279bp|location=Sequence derived from alignment at P-littoralis_Contig148:3819..5097- (Pylaiella littoralis U1_48)
GAATCGACATGGACAAAGAGAGGCTTTTCTCTCGTTTTCCGCCATCTATA
TGTCACCGAAGAAGATGCGCTGCAGCTAAGGCACACCGTCGTCTGTGAAC
TCGACGGACAAATAGGAAGCCTACAATGCCCAGAATATCATCATCAGTGG
TCGGACGCCATAGCAAGGGAAGTTTATTAAGTGTATACCATTGGCATGGC
CATGTACGGCTCGATCCGTTCTCTGCCGTGCACCAGCTGCTTCCCCCCCG
AGCCCATCGGCGGGGCCGAGCAGGGATCTCTCAAGGAGCTGGAGAACGAG
TACGTCGCTCTCCGCAGGAGATTGCACCCTATGAGCGCGGGCTTCGACTA
CGGAAGTCTCTCGAACGTACACACCGATGAGTTCAAATCAACGCAGTTCA
ATCAAGTGTACCTAACTATTGCAGCTGCGATCAGGGCACATCTGTTCCTT
CTGTTCGGGGACGGGTAGGCACTTCAAGAAGAACCAATCACCTCTACCAA
CAATCGCTCTCGACGGTAGCGGCAGCGTGTGCGCAGCCACAACCGAACTA
CTACAAAGCCGCGCAGACGGCCTCGAGGTTGTACGCCGAACAACCATCCG
CGCACCGAGCACACAGGAGAAAACCGCTGGATTTGTCAGGCCGATTAATA
CTCCGGCTTGCCCCTCGGCAGCCACCGCTGATCTTCTGCGTACGAGCGGG
GACCTTAGGAAGACAAGGCGCGGTAAGATGGCCGACTTATTTGCGGAAGC
TCTAAACTCAGACGTGTATGCGGACGACTTCAAAGGCCTACTTGGGTGGA
AAGGCAAGGAAAATCAATTAACTCACCCGCTCACCGTGCGCACAATCCAG
GACTTTATTCGCTCCAGGATGGAGGTAGTTGACGGCGTCAAACCATACGC
AAATGTTTGGGTCAAGAGCGTGTACCCGGTCACGAAGATCAAGCCGGGGC
AAATGTCAAGCGGAATCAAGGTGGTAGCAGCCAGAATGAAACATGCCAAC
GGCGAGCCTTATGTACCGCCCAAAACTCTCCACCTCAAAAAATTATGGAT
CCGGGTACACGGGCAAGGGTCGTGCTTTTGCATCAATCGAGGGGGGCACC
ATGAATCGAACTCCATTTACTTCGAGATGGGGCCGGACAAGTGCTGGCAA
CCGTGCTTTTGTACCGATGACACAGTGGGATCGAGCGGGAAGACATGCCA
AAACTTCAGTACTGGCGAACGCGGGGGCAAGGACTTATCGAGCGTTCTTT
CGAAGCTCTTCCACTCGGACCCCGCGAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig148:3819..5097-

>mRNA_P-littoralis_Contig148.2.1 ID=mRNA_P-littoralis_Contig148.2.1|Name=mRNA_P-littoralis_Contig148.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=552bp|location=Sequence derived from alignment at P-littoralis_Contig148:3819..5097- (Pylaiella littoralis U1_48)
ATGGCCGACTTATTTGCGGAAGCTCTAAACTCAGACGTGTATGCGGACGA
CTTCAAAGGCCTACTTGGGTGGAAAGGCAAGGAAAATCAATTAACTCACC
CGCTCACCGTGCGCACAATCCAGGACTTTATTCGCTCCAGGATGGAGGTA
GTTGACGGCGTCAAACCATACGCAAATGTTTGGGTCAAGAGCGTGTACCC
GGTCACGAAGATCAAGCCGGGGCAAATGTCAAGCGGAATCAAGGTGGTAG
CAGCCAGAATGAAACATGCCAACGGCGAGCCTTATGTACCGCCCAAAACT
CTCCACCTCAAAAAATTATGGATCCGGGTACACGGGCAAGGGTCGTGCTT
TTGCATCAATCGAGGGGGGCACCATGAATCGAACTCCATTTACTTCGAGA
TGGGGCCGGACAAGTGCTGGCAACCGTGCTTTTGTACCGATGACACAGTG
GGATCGAGCGGGAAGACATGCCAAAACTTCAGTACTGGCGAACGCGGGGG
CAAGGACTTATCGAGCGTTCTTTCGAAGCTCTTCCACTCGGACCCCGCGA
AA
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