mRNA_P-littoralis_Contig148.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig148.36.1
Unique NamemRNA_P-littoralis_Contig148.36.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig148contigP-littoralis_Contig148:179848..180464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size547
Hectar predicted targeting categoryother localisation
Exons2
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789696.5121317-UTR-P-littoralis_Contig148:179847..1800691680789696.5121317-UTR-P-littoralis_Contig148:179847..180069Pylaiella littoralis U1_48UTRP-littoralis_Contig148 179848..180069 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789696.5271554-CDS-P-littoralis_Contig148:180069..1801471680789696.5271554-CDS-P-littoralis_Contig148:180069..180147Pylaiella littoralis U1_48CDSP-littoralis_Contig148 180070..180147 +
1680789696.5412903-CDS-P-littoralis_Contig148:180218..1804641680789696.5412903-CDS-P-littoralis_Contig148:180218..180464Pylaiella littoralis U1_48CDSP-littoralis_Contig148 180219..180464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig148.36.1prot_P-littoralis_Contig148.36.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig148 180070..180464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig148.36.1

>prot_P-littoralis_Contig148.36.1 ID=prot_P-littoralis_Contig148.36.1|Name=mRNA_P-littoralis_Contig148.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=108bp
MSTRRAESIALCLYPSKQASSCSGMGGIEKAVVKSNKINRRQYHTPSSSA
PTRVTVLLAGVVPPEAFRSACVTVPPRRPLSLSTEPNLSPNRSPNRSPNQ
SSEPGGSH
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mRNA from alignment at P-littoralis_Contig148:179848..180464+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig148.36.1 ID=mRNA_P-littoralis_Contig148.36.1|Name=mRNA_P-littoralis_Contig148.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=617bp|location=Sequence derived from alignment at P-littoralis_Contig148:179848..180464+ (Pylaiella littoralis U1_48)
CCACTGTGCGGGGGCAGGGGTGGGGCTATCACATCACACCATACACTAGA
GGGTTGTGTGTGATAGAGGGAAAATTGGGTACGAAATGTTAATGTCGTCT
TGTAACCATACCATGTAACCATCCCATACCACGAGACGCGCAACGAAAAA
GAGTCTTACTTCAACAAAGTATCCATGTTCTTGGCGGGATGGTAGAAACC
TTGAAACACGGGGTATCGTAGTATGTCGACGAGGCGAGCTGAGAGTATCG
CTCTTTGTTTGTATCCCAGCAAGCAAGCAAGCAGTTGTTCGGGTATGGGC
GTTATCATGTGCAGGAAGAGATCGTTATTTTCTGTTCTTGTTTCAAAATG
GTGGTGCGTGCTGTGCATCAGGGGATTGAAAAAGCTGTCGTAAAATCAAA
TAAAATCAACCGTCGTCAGTATCATACACCATCATCGTCAGCGCCGACAC
GTGTTACCGTCTTACTCGCAGGCGTCGTCCCCCCCGAAGCCTTCCGCTCG
GCGTGTGTGACAGTGCCGCCCCGTCGCCCTCTCTCTCTGTCGACCGAACC
AAACCTATCCCCGAACCGATCCCCGAACCGATCCCCGAACCAATCCTCAG
AACCGGGGGGATCACAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig148:179848..180464+

>mRNA_P-littoralis_Contig148.36.1 ID=mRNA_P-littoralis_Contig148.36.1|Name=mRNA_P-littoralis_Contig148.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig148:179848..180464+ (Pylaiella littoralis U1_48)
ATGTCGACGAGGCGAGCTGAGAGTATCGCTCTTTGTTTGTATCCCAGCAA
GCAAGCAAGCAGTTGTTCGGGTATGGGCGGGATTGAAAAAGCTGTCGTAA
AATCAAATAAAATCAACCGTCGTCAGTATCATACACCATCATCGTCAGCG
CCGACACGTGTTACCGTCTTACTCGCAGGCGTCGTCCCCCCCGAAGCCTT
CCGCTCGGCGTGTGTGACAGTGCCGCCCCGTCGCCCTCTCTCTCTGTCGA
CCGAACCAAACCTATCCCCGAACCGATCCCCGAACCGATCCCCGAACCAA
TCCTCAGAACCGGGGGGATCACAC
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