mRNA_P-littoralis_Contig1473.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig1473.1.1
Unique Name	mRNA_P-littoralis_Contig1473.1.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig1473.1.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig1473.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig1473	contig	P-littoralis_Contig1473:1551..8103 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	160
Hectar predicted targeting category	no signal peptide or anchor
Exons	2
Cds size	159

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789695.5119987-CDS-P-littoralis_Contig1473:1550..1629	1680789695.5119987-CDS-P-littoralis_Contig1473:1550..1629	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig1473 1551..1629 +
1680789695.5223217-CDS-P-littoralis_Contig1473:8022..8102	1680789695.5223217-CDS-P-littoralis_Contig1473:8022..8102	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig1473 8023..8102 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig1473.1.1	prot_P-littoralis_Contig1473.1.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig1473 1551..8102 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig1473:1551..8103+
coding sequence from alignment at P-littoralis_Contig1473:1551..8103+

protein sequence of mRNA_P-littoralis_Contig1473.1.1

>prot_P-littoralis_Contig1473.1.1 ID=prot_P-littoralis_Contig1473.1.1|Name=mRNA_P-littoralis_Contig1473.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
QAFFTLAEHQGFGLMDGGEDQKLQKPGIAVAVAGGSTAVGPMLLATLPCS
GAG

mRNA from alignment at P-littoralis_Contig1473:1551..8103+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig1473.1.1 ID=mRNA_P-littoralis_Contig1473.1.1|Name=mRNA_P-littoralis_Contig1473.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6553bp|location=Sequence derived from alignment at P-littoralis_Contig1473:1551..8103+ (Pylaiella littoralis U1_48)
CAGGCGTTTTTCACCCTGGCGGAACACCAGGGTTTTGGGCTCATGGACGG
AGGGGAGGACCAGAAACTGCAGAAACCAGGTATTTTCGTGCTCCCCATGC
CCATATGCGGCCCAGGAACAACAATCACACACCGTTTTGGCTTATACAAG
TGTTTATACCATTCTTCGGCCCTACTCACCGCACCCTCAACCGTACCCCT
CAGCGAACATGTTATGAATCTTGTTCCTCGACCCCAATACAACGCTTTTT
CACGAAAACATATGCTTCTTTCGAAAAAAGAGCGTTGCGTTGATCGATAC
ACATGATATACAGAGGGTGGGAGCCTCAAATATACAATACACGACCCTGG
TGGCCCCATCGGTCATCATATGAAAACTTCTGGCACCAACTTTGAAAAAA
CTATTTTCCACCAGGCGTTTTTCACCCTGGCGGAACACCAGGGTTTGGGC
TCATGGACGGAGGGGAGGACCAGAAACTGCAGAAACCAGGTATTTTCGTG
CTCCCCATGCCCATATGCGGCCCAGGAACAACAATCACACACCGTTTTGG
CTTATACAAGTGTTTATACCATTCTTCGGCCCTGCTCACTGCACCCTCAA
CCGTACCCCTCAGCGAACATGTTATGAATCTTGTTCCTCGACCCCAATAC
AACGCTTTTTCACGAAAACATATGCTTCTTTCGGAAAAACAGGGCTGTGT
TGATCGATACACATGTTATACAGAGGGTGGGAACCTCAAATATACAATAC
ACGACCCTGGTGGCCCCATCGGACGTCAGGTGAAAACTTCCCGCACCGAC
CTGCTTTTTTTGTCTCCAGAGGGCTTTCTTTTTGTTCTGGTGGAACCAGG
AACAACAGGATTTGGCACTCACAAGCGGAGGGGATGGCCAGAAATTGCGG
AAAGCAAGTATTTTCATGCTCCCCATACCTACATGCGGCTCAGGAAATGC
AATGACACACGGTCTTCGCCCCCACAAGTACCTATGCCATTGTTCGACCT
TGCTCACCCCATTCTACCCAGGATTCACTCGTTCAAAATGTTGCGCATTC
GTTGTACGAGTATGTTTGGAAACCCCAGAGAGTTGGGGCAGGGTCTGATT
ACCTGTGGTATATTTCATCGACCGTATTAGATTCCTTGCCTTAGCGAACC
GCCCGTACACCACATTTTTGCATGCTATCGAAGGTCGATGCTTTTTTTCC
GGTGGTTTCATGGTGTTGCCAACCTCTGACACATGTCATCCGAGTTATAT
TGCTTGCCGCAGCGAACAAGCACTAAACGCGAGTACTCTGTTCAATTATC
GTGATCTGCCAAAGAAAGAAGACTATCATAATGCGACATTTTGTCCACGG
AAAACAACAAGAAGAAGCGAGTTGTGAACCTCCTACCACCCCGCATAACA
CGATGAACTTGCGTGTCAGACCTCAGGGTCAACAGGCTCTGCCTCCTGTA
CAGGACGACTGAATCGTGCACCCTGGGCTTGAAAGTATCCGAGCGTTAAT
TTCTATGCCGACTTCTCACCACACAGACGGGCACATCATTTGCCGGGACG
AAACCAAAACTTGAGCAGCAGTTGCACAACAGCGCAGCCGACACAGGCAT
CGATACCACGTTTAACGAATACAACACATTACAGCGCAGCCGGGGAGGGA
AAAAAACGCGCTACGTAGAGAGGGAAACAGACCTGGCAGGCACACTTCCA
AAGCAGGTAAGGCTCACGGTGGGACGCTCGAAAGCCAATCCAATAGACAA
CGACAACCGAGACCAATTTGGTAACGGTAGATATTCTTGCGATGCACCAA
GTACCAGATGGTATGCACTTCGTATGCAATTCGCCCCCCCGCCGATACAC
ACACCCTCTCCCTTGCTCCTAGCTCCTCCAGCCGCTCACACTGGTCCTCC
TCTACTTCTCCCTCCCCCGCGCTCAGCAACACAACGTTCGCGTTTGTGGA
ATACTCTGACATGTGGGATTTATTATCGCTCCAAATACGGTACAACCGTT
GTCGTGCGTGAGAAAAGTAGGTGCCCTCGAACAGCGCTGTCCAGTGGAGC
TATTACGGCAAAACCGCCATCACATCGGAGACATTGGTCCTACTCTTCTG
GACTATATACAAGCACGCCAACGACTTTTCGTACGAACACCAGGTCACCC
GCTGCTTCCTCTCGGGCCGAACACGGTCTTGTACATCTCTTTGAGCTGGT
TCATCGACATACCATCGACCAGGCTCACCCCCACCCTCCTGCTGCTGGTT
CAACGCGGTGACGAGGTTGTCACGTTCGTTGTCCTTAAACTCCCGGCTCG
GTCTTTCTACGACCGCCCGCGCCGTCTTCTGCACCGTTTCGGACCGCCGG
TTAGCCGGTGCGGACCAGCAAGGCGATACACCCTTGGCCTCCATGGCTCC
CAAAACAAACTGCACGCGGACGAAGAAAAAGACCGATGACACCAAGCTCA
GCTTGAGGCAGCATGTCATCAGATCTTGGTCAATAGCTGTGGCTTTTCTC
GACGACTCCGCCAGCCTCTTCGTCATGAAGTTGTTTGCCATCTTCACACA
CGCGTCGTAAGTCACGATTGCAGAACAGTTGCCCCACATCCAGCACCGAA
ACTCGAACGGGAAGTCGACGAGGGCCAGGAACGCAAGGAAGGCGTTCGAG
AGTTGACTATAGAACCTGGAGTCTTTGTTGCCGATGCTGCATTTCGGTGT
GCCACAAGTAACAGCATGGAAAATACAGGCAATTCGGGTTGACACAAACA
CAGCTCAATGCGTAAACACGGTGCGGTTTGGTTTTTACACAGAGGTGAAA
TCGAGTCCCATCAGCCAAACACTAAAAAAACGATGAATCCTCGCTCCAAA
CGTCGAGAATGACGACAACCTAAACGTTGGCGACCCGCGGTGGTATGTTC
CAGGCCGTCCGAGGGCTGCCCTCTTTGCGATGCATCAGACAGTACTCGTG
GCGACATGCCGACTACACCACGGCGTTGCTTCGTTAGAAGTGGTACCACC
ATGTGTGTGCCATACACGTGCTCGTTACCGTTCAGAATCACGACGAACAT
CTCCACTGATGTCCGACGTGTATATCCTCGCAAAAAGGCGCAGCCCAAAA
CAAAATGTTACTATGAAAATGTTCTCGCTAGTTTTTCCAACACCGATCGT
ACTTGTTGCAATCATGTCCCCTGTAGGTTTCGTTCGTGGGGCCCCACCTA
TGCACATCCTTCTTTTGCTTTCTTCGACTCGCCTAGTTCACGCAGGGATT
GCATGAAAAACCAGAACGGCACACCCACGCCCATACCTCTTGGCGACAAA
CTCGTCCGTTGAAAGCCAAGCGAGGTTCGTCTGAAGAGGCGAAAAAAAGC
CGAATAGGTACGTCTGAATCGGACTCCCTCCGATGAACTGCTCGAGACAG
TTGTACATGAAGGATAGCTCCACGAGGTACTTGTTGTCGTAGTTGAACAA
CCCCGTCTTTCGCCAGTCGTCACTTGCCCACGCGGGCTTCCCACATGACC
CACACTTCCGACGCTCCACTTCCACTGTCACGATATTCGGTGCCTATAAG
AAATAGAGTGAGGTCGGTGGTTAGAGAGGGGCGACAAGTGTGTTAAGACC
ACGCCAGGATAAGTCTTTAGAATCCCATGCACGACTATGGGAAGAGGATG
CCCCTTCTCGGTATTCAGTCCTCCATGGGTTCATAGACAATAGCGAGGTG
CGACATTACAATCGCATCCAAATGTGTTTTGCATTATATTGGGGGGGGAG
CGTCATCACCGTCCCCATGGTTACGAACGTCGGGGCCAGCGGGTGAACCC
TTCCGGGGCCAGGCCATTTTGTGCTTTTCTGCGCGGACAGCACGGGTTCG
AAATTGGAACCAGTGGTTTTTCTCGGAGAACCAGACGAAAAATTGGCAGC
TGTGAGCAAACCAAGATATTTACACGTGAGAACCTCACAGGCAGACTGCC
AGGACTCCTAAAGAATTGTCGCAACAGGCTGTTCACGTCCCTGGAGAGGC
TGCAAGGGATACCCGGTTATCGCCATGCCGCGTCCTACTCTCTATTCTCA
CAGACTCACGGAATTACGCTTGTCCTGCGCTGCCCACAATACTTTCACCA
CTCACCCCAGTGACGACCTTTGCATCCTCGTCCTCGAGAGCATCCAGAGT
GCCCCCACAGGTGCACTTGCGTTGGGATACTTTGAACCTTCTACCCGCTT
CTGCCGTCACTGGCGGCAGCTCCGAGGGGCGGATGGGTGGAAACTTGTGA
CGCGAAATGTAGAAGAGCATATCATCCACCTTCAAACGATAATCATCGGG
GGAACGCTTGGCGAGCAACTGCGGAGTACGGGGCAACACAGGTCCACCCG
ACGAGGCACTTCCAGAAGCATCATCTGCATCAGCCGTCGTCCCGCTCCTC
GCAACGGTCAAACCCCGCCCCAAGACGCCCGTGAAGATTGCGACGATCAA
CGTGTGCACGCATCTTGAGCGCTTCTTTTCCTTGAATTCGGAGCAGCCCT
CTCCCTTCGTGGACTGAGGGCGTGCGCGCGAAGGAGTATGTAGCATGATG
GATGAGCAACAAGTCAAACTAGCATAGCACAAGCACCAAAAGTTTTGGCT
AAAAGAGCAGCGACAGGAATGCGCCAGTTACCACTTCGACCAAAAGGCAG
GGGACGGAGGCATGGCCTGGATTTGACCTGGGGTTTGATAGGAGGGTCTC
AATGACTGCGATAGTCATGCCCCCGATGTATCGCCCTGTTTCATATGTCT
ATGGAGTTCCCTCTTTACGAATACACATATTCAAAAGGCCCCACATGTCG
CACATGCATCTACGCATCTACAACCTTCTTGCCAATCGGTAGTACTGTGA
ATAAAAAAAGGCTCACATACGACGTCAATGGCAATTCCCATCACAAACTT
TGCTCTTCATCTCTGCGTAATCTCTGCGTAGCCTTACCCTGCACATGAGG
TGCCGCTCAGGAGTCAATCTTCGGGGCGCACTCCCGGGTGAGACTTCGTC
ATTCTTCACACATCCCCAGTCCTGCTCGGTCGTTCGTTTCCGGTTGTCGT
AGATGGCGAAATGACGACGTTCCGTCTCGTACAGCGGCCACACGCCATTC
CTGTCTGCCCCCACAATGACTGCCATCACATCATCGAACTCCGGTTGAGT
CACTAGACCAGCCGCCTTCACTGTTTTCTTCTTGATGTGGAGTAACGCGG
CAGCGCCGTGTCGACACACGCCTCCGATCAAGCTGGGCACCCCACCGTTG
TTCGCCGACGTCTGTCGCTGAGATTGGAATCCCGCCCTCTGCCTGCGCAA
CGAAAAGAGATGCCGTTCGAGCGGAAGGGAAGAAACAACGGACCACCACC
GCTGAATTTCACCTAGACTTGGCACGGAACGATTTTTTCCACATTGTTTC
GTTCTAGTGTTGTTTCAGTTTGTGATTTTGTGACATCAGATGGCACAAGT
ACGTGTTCTGCCGGCTACGCAACGTGGTCGATGGTGGCGTGTAGGGGTCA
AACCCCAAGACGAGGTGTCCTGGGCTCATTTGTACTGCTGTACAACTGTA
GCAGCGCCCTCCAGTTTTACAGGTACACCATACATGATATTGTAGGACTA
GGACTGACACCCTGCATCATACGTATACCTCAAATCAACACATGAGCAGC
AACCTGACGATGTGGTCAGTTGCTGCTGCTGCTACTGCGTGCGGACTACC
CGTACTGGGACTACCCGTACTGGCGTGTGTAGTGTGACTGCTGCTCTGTG
TGTGCTTGGTGGTCTGTATGACGGTGTGAGGCGAGAGAAATGCAAAACCA
CAGCAGCAGCAGGAGCAGCAGCAGTACCATATCATATCATATCATACCAC
ATCATTCGTGTGAGATGCTTGAGTGAAACAACGTGCAGCTGCCAATATGA
GCGAGTTTTGCTGCTGCGGCTGCTGCTGCTGCTGCTGTGTGCGTGCCACT
AGTCCCACTAGTCCAATACTGCAGCAGTAGCGTGGTGAACCAACTAACTC
CTCTCCGTCGCGGGTTGGAAATGACGATAGGTATTATTATGGTTTTATAT
TGACTGTTTTATATACCAAGCCCGAATGGACCGCCCCTCTGCCCCCCCCG
CCCGCCAAATAAAAATCTAGGATGGGTAACAGACTTGCTAAACTCACTTG
TAACAGCAGCACGTGTTCTTCTCGGACGCCCGGTGCGTGCAGCATACCCT
TTTCACACCAGGTCCTAGTGAAACCTCGTGTGCGTGGCTCTTGTGTACCC
ACCGTCGGCAGTCGGGATTATCCTCGCACAGCTTCAGCCTTTGGCGGCTC
CGCGTCTCGGTTAGATTGCAAACTGCGCATTGCTTGTTGTACGCGAAGTT
CGTCACAGCTCCGACGTCGCTGTTGACGCCTCCACCACCCCGTTTGCGAC
GGCGCGGCGTTGCGGGTGTTGCCGATGCTGTCGTCGCTGCTGCTCCTGCT
GCTGCTCCGGTTGCTGCTGCAGGCATCGCGGTGGCGGTTGCTGGGGGAAG
CACTGCTGTAGGACCGATGCTGTTGGCCACCCTTCCCTGTTCTGGGGCTG
GTC

Coding sequence (CDS) from alignment at P-littoralis_Contig1473:1551..8103+

>mRNA_P-littoralis_Contig1473.1.1 ID=mRNA_P-littoralis_Contig1473.1.1|Name=mRNA_P-littoralis_Contig1473.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig1473:1551..8103+ (Pylaiella littoralis U1_48)
CAGGCGTTTTTCACCCTGGCGGAACACCAGGGTTTTGGGCTCATGGACGG
AGGGGAGGACCAGAAACTGCAGAAACCAGGCATCGCGGTGGCGGTTGCTG
GGGGAAGCACTGCTGTAGGACCGATGCTGTTGGCCACCCTTCCCTGTTCT
GGGGCTGGT