mRNA_P-littoralis_Contig147.50.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig147.50.1
Unique NamemRNA_P-littoralis_Contig147.50.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig147.50.1 vs. uniprot
Match: A0A6H5KRI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI1_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 9.660e-98
Identity = 160/209 (76.56%), Postives = 162/209 (77.51%), Query Frame = 2 
Query:    5 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATPDSTKGNGPNYPRGFQPGREGSDGAKLPVYMFLQQGVLEEGVQEHCTAGVHTRVARWWSSNADSNEDRAFTGNCTSTGKILAAVVK--------DEDLACYYGLKKSFSGRSTTWVLSRSSLARERADAQWSFCLPAGWAEEYGADGSWKFKTSK 607
            MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQAT DSTKGNGPNYP GF+PGREGSDGAKLPVYMFLQQG LEEGVQEH TA VH  VARWWSS ADSNEDRAFTGN TSTGKILA+VVK        DEDLA YYGLKKSFSG                            WAEEY ADGSWKFKTSK
Sbjct:   22 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATHDSTKGNGPNYPCGFKPGREGSDGAKLPVYMFLQQGALEEGVQEHTTAEVHAHVARWWSSYADSNEDRAFTGNRTSTGKILASVVKADLYIPRQDEDLAFYYGLKKSFSG----------------------------WAEEYSADGSWKFKTSK 202
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BLAST of mRNA_P-littoralis_Contig147.50.1 vs. uniprot
Match: A0A6H5K1G6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G6_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.130e-57
Identity = 97/101 (96.04%), Postives = 98/101 (97.03%), Query Frame = 2 
Query:    5 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATPDSTKGNGPNYPRGFQPGREGSDGAKLPVYMFLQQGVLEEGVQEHCT 307
            MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQAT DSTKGNGPNYPRGF+PGREGSDGAKLPVYMFLQQG LEEGVQEH T
Sbjct:   22 MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATHDSTKGNGPNYPRGFKPGREGSDGAKLPVYMFLQQGALEEGVQEHTT 122
[Close]
BLAST of mRNA_P-littoralis_Contig147.50.1 vs. uniprot
Match: A0A6H5K994_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K994_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.060e-12
Identity = 39/61 (63.93%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:  422 KDEDLACYYGLKKSFSGRSTTWVLSRSSLARERADAQWSFC--LPAGWAEEYGADGSWKFK 598
            +DEDLA YYGL+K  S + T WVLSRSSL  ERA+A  SF   LPAGW EE+G D SW FK
Sbjct:   63 RDEDLAQYYGLRK-VSSKPTKWVLSRSSLGEERAEAHISFGFGLPAGWCEEFGPDHSWTFK 122
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig147.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KRI1_9PHAE9.660e-9876.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1G6_9PHAE1.130e-5796.04Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K994_9PHAE3.060e-1263.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig147contigP-littoralis_Contig147:339966..340926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size608
Hectar predicted targeting categoryother localisation
Exons3
Cds size603
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789694.501207-CDS-P-littoralis_Contig147:339965..3401481680789694.501207-CDS-P-littoralis_Contig147:339965..340148Pylaiella littoralis U1_48CDSP-littoralis_Contig147 339966..340148 -
1680789694.5126796-CDS-P-littoralis_Contig147:340307..3405501680789694.5126796-CDS-P-littoralis_Contig147:340307..340550Pylaiella littoralis U1_48CDSP-littoralis_Contig147 340308..340550 -
1680789694.5251515-CDS-P-littoralis_Contig147:340745..3409221680789694.5251515-CDS-P-littoralis_Contig147:340745..340922Pylaiella littoralis U1_48CDSP-littoralis_Contig147 340746..340922 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789694.5368273-UTR-P-littoralis_Contig147:340922..3409261680789694.5368273-UTR-P-littoralis_Contig147:340922..340926Pylaiella littoralis U1_48UTRP-littoralis_Contig147 340923..340926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig147.50.1prot_P-littoralis_Contig147.50.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig147 339966..340922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig147.50.1

>prot_P-littoralis_Contig147.50.1 ID=prot_P-littoralis_Contig147.50.1|Name=mRNA_P-littoralis_Contig147.50.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=201bp
MDMDTATVSTPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDA
QQATPDSTKGNGPNYPRGFQPGREGSDGAKLPVYMFLQQGVLEEGVQEHC
TAGVHTRVARWWSSNADSNEDRAFTGNCTSTGKILAAVVKDEDLACYYGL
KKSFSGRSTTWVLSRSSLARERADAQWSFCLPAGWAEEYGADGSWKFKTS
K
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mRNA from alignment at P-littoralis_Contig147:339966..340926-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig147.50.1 ID=mRNA_P-littoralis_Contig147.50.1|Name=mRNA_P-littoralis_Contig147.50.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=961bp|location=Sequence derived from alignment at P-littoralis_Contig147:339966..340926- (Pylaiella littoralis U1_48)
AGGTATGGATATGGACACCGCCACTGTCTCGACACCCGCGCGCCAAAGTT
TGGGGACTCGTCCTGCGGTGACACCGACACAATCGGCCAAGAAGGATGAA
GACGAGAGGCGTAAGCGCCGAACCTCCGGACCGCGCGCGGTCGGCACAGA
CGCTCAGCAGGCCACACCCGACTCCACGAAGGTGCGTCAATCGACTTGTT
TGTTTTGTGCAGTACTGAGGGCGTACGAGGTGGACGGCACTCTGTTTGGT
TTCATATGCGCCGTTTGAAGTCGATGGTCGTCCTCTTTTATTTTCGCAAC
AGCGGCCCCACGATAACGGGCATATACGAAGATGATCGTTGGCTACTGTC
TAAATATGCATGTTTATTATTTGCAGGGGAATGGGCCGAACTACCCTCGC
GGGTTTCAACCAGGTAGGGAGGGAAGCGACGGGGCGAAGCTACCTGTGTA
CATGTTCCTCCAGCAAGGCGTCCTGGAGGAGGGCGTGCAAGAACACTGCA
CCGCTGGAGTGCATACTCGTGTTGCCCGGTGGTGGTCTAGCAACGCAGAC
AGCAACGAGGACCGCGCTTTTACTGGGAACTGCACCTCGACCGGCAAAAT
CTTGGCTGCGGTGGTCAAGGTAGGTGTTGGTCAGGAGTGGTCGTCGTATA
CGCGCTATTCAATGGACGTGTTTATCCAAGTACTCGTCTCTTGCAACCTT
GCTGCCCCTCCTATGTACCGGCGTTATTGACACAGTGACTCTCGTGGTAT
GTTGGCCGATTTATATAACCCGCGCCAGGACGAGGACCTCGCCTGCTACT
ACGGACTCAAGAAAAGCTTCTCTGGTAGGTCCACGACGTGGGTGCTGTCG
AGGTCGTCATTGGCACGAGAGCGAGCCGATGCGCAGTGGAGTTTTTGTCT
ACCGGCAGGATGGGCGGAGGAGTACGGTGCTGACGGCTCATGGAAGTTCA
AGACTAGCAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig147:339966..340926-

>mRNA_P-littoralis_Contig147.50.1 ID=mRNA_P-littoralis_Contig147.50.1|Name=mRNA_P-littoralis_Contig147.50.1|organism=Pylaiella littoralis U1_48|type=CDS|length=603bp|location=Sequence derived from alignment at P-littoralis_Contig147:339966..340926- (Pylaiella littoralis U1_48)
ATGGATATGGACACCGCCACTGTCTCGACACCCGCGCGCCAAAGTTTGGG
GACTCGTCCTGCGGTGACACCGACACAATCGGCCAAGAAGGATGAAGACG
AGAGGCGTAAGCGCCGAACCTCCGGACCGCGCGCGGTCGGCACAGACGCT
CAGCAGGCCACACCCGACTCCACGAAGGGGAATGGGCCGAACTACCCTCG
CGGGTTTCAACCAGGTAGGGAGGGAAGCGACGGGGCGAAGCTACCTGTGT
ACATGTTCCTCCAGCAAGGCGTCCTGGAGGAGGGCGTGCAAGAACACTGC
ACCGCTGGAGTGCATACTCGTGTTGCCCGGTGGTGGTCTAGCAACGCAGA
CAGCAACGAGGACCGCGCTTTTACTGGGAACTGCACCTCGACCGGCAAAA
TCTTGGCTGCGGTGGTCAAGGACGAGGACCTCGCCTGCTACTACGGACTC
AAGAAAAGCTTCTCTGGTAGGTCCACGACGTGGGTGCTGTCGAGGTCGTC
ATTGGCACGAGAGCGAGCCGATGCGCAGTGGAGTTTTTGTCTACCGGCAG
GATGGGCGGAGGAGTACGGTGCTGACGGCTCATGGAAGTTCAAGACTAGC
AAG
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