mRNA_P-littoralis_Contig146.109.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig146.109.1
Unique NamemRNA_P-littoralis_Contig146.109.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig146.109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig146contigP-littoralis_Contig146:428430..429737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size430
Hectar predicted targeting categorysignal peptide
Exons3
Cds size234
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789685.7201886-UTR-P-littoralis_Contig146:428429..4284621680789685.7201886-UTR-P-littoralis_Contig146:428429..428462Pylaiella littoralis U1_48UTRP-littoralis_Contig146 428430..428462 +
1680789685.7509623-UTR-P-littoralis_Contig146:428962..4289811680789685.7509623-UTR-P-littoralis_Contig146:428962..428981Pylaiella littoralis U1_48UTRP-littoralis_Contig146 428963..428981 +
1680789685.7610958-UTR-P-littoralis_Contig146:429593..4297371680789685.7610958-UTR-P-littoralis_Contig146:429593..429737Pylaiella littoralis U1_48UTRP-littoralis_Contig146 429594..429737 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789685.7299473-CDS-P-littoralis_Contig146:428462..4284881680789685.7299473-CDS-P-littoralis_Contig146:428462..428488Pylaiella littoralis U1_48CDSP-littoralis_Contig146 428463..428488 +
1680789685.7383711-CDS-P-littoralis_Contig146:428754..4289621680789685.7383711-CDS-P-littoralis_Contig146:428754..428962Pylaiella littoralis U1_48CDSP-littoralis_Contig146 428755..428962 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig146.109.1prot_P-littoralis_Contig146.109.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig146 428463..428962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig146.109.1

>prot_P-littoralis_Contig146.109.1 ID=prot_P-littoralis_Contig146.109.1|Name=mRNA_P-littoralis_Contig146.109.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=78bp
MYAVFLWIWFVIAREMRWNAQNIEGYDIPVGVMAFVIVPDMISAGCFLLG
FVSAFVAICKWRENADYETGGAETSPV*
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mRNA from alignment at P-littoralis_Contig146:428430..429737+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig146.109.1 ID=mRNA_P-littoralis_Contig146.109.1|Name=mRNA_P-littoralis_Contig146.109.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1308bp|location=Sequence derived from alignment at P-littoralis_Contig146:428430..429737+ (Pylaiella littoralis U1_48)
CTTGCCGCACTTGTGTTTGCCCTGGAGTTTGCCATGTACGCCGTTTTCCT
GTGGATTTGGTGAGTCAGGAAACAGAGCTCTACAGGGGGGGGGGGGAGGC
ACACGTCATAGACCGTTTCGAAAGGTTGCGTCAAATGAGATCTACGAAGG
ATGTAGTTCCCCAATCAATGCACATCAGTCCCCTGTTGTTAAAAGGTCGA
AGCTTGGGGAGCTTGTACGATATCTCAACCCGTGCCCTACACGCTAAGAT
GGTTGGAAATGTATAAGTACGTTAGTGTTCCGTCCCTCAGACCGCACCTG
CCGAACATCTCCATGCGTTTTCAAGGTTCGTGATCGCACGCGAAATGAGG
TGGAACGCCCAGAACATAGAAGGCTACGACATTCCGGTCGGCGTCATGGC
GTTCGTGATAGTTCCTGACATGATCAGCGCTGGGTGCTTCCTCTTGGGTT
TCGTGTCCGCCTTCGTGGCCATCTGCAAGTGGCGCGAGAACGCGGATTAC
GAGACCGGTGGTGCCGAGACGTCACCGGTTTAAGAGAACGGATCCAGCCC
AGGTAAGCACAGTTCTCTTAAAGATTCTGTATTTTGGGTGTACATGCCCC
ATGTTCTACATTCGCTCCTACCTCTATAACTTTTACACTACCAGACGACT
TCTAGCATTGCGTTTGATAATGCATCATTTTTAAGGGGGGAAAGAAAGAG
CCATTGCGCCGACTTTTGTACGAAAAGGGGCTGGATGTTTACCCTGCGAG
GCTCTGTGTGTTCCGAAGGGTATCCCGCAGTCAACGCAGCAGAAGGCAAG
CGCTTTCCGTATCTACGCCTGCTTTCCTTTCCAGTTCGCTTTTCGTTTCT
ACGTCTGGATGTTGACACAAACCCTGCGCGCAAGTAAGCGGACGGGGGGA
GCGGCGTGTTGAAAGTGACTGACAATGGCGAAGCCTCCCCATGTGGCAAG
CACGAATCAGTAGAAACACGTACGAAGTACTATTTTTGAACCTGCACAAC
GCCACGCAGAATGCGCCGCGACACACTTGTCTCGAGGCTTGGACGTCAGT
TTTATTTCCCCGTGGTAGTTGTGGGGTGTCAGTCCACATCTTGCAGAGAG
AAGCGCTACTTGCGCTGACCCCGAGCCTCTTCGCTGTCTCCACGATCATG
CTCTCACCCCCCAGTTTATGTTCAGGTCACCGAACCCATCCGCTGTCCCC
GGGACGTGAAATCAATCAACGTTTGTCAACATCACCAACCCCAGGAACGG
GAGATATGAGCAGTAGTGAGCACGTACACCGCCATACTCAGAGGTCATGG
TGCAGTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig146:428430..429737+

>mRNA_P-littoralis_Contig146.109.1 ID=mRNA_P-littoralis_Contig146.109.1|Name=mRNA_P-littoralis_Contig146.109.1|organism=Pylaiella littoralis U1_48|type=CDS|length=234bp|location=Sequence derived from alignment at P-littoralis_Contig146:428430..429737+ (Pylaiella littoralis U1_48)
ATGTACGCCGTTTTCCTGTGGATTTGGTTCGTGATCGCACGCGAAATGAG
GTGGAACGCCCAGAACATAGAAGGCTACGACATTCCGGTCGGCGTCATGG
CGTTCGTGATAGTTCCTGACATGATCAGCGCTGGGTGCTTCCTCTTGGGT
TTCGTGTCCGCCTTCGTGGCCATCTGCAAGTGGCGCGAGAACGCGGATTA
CGAGACCGGTGGTGCCGAGACGTCACCGGTTTAA
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