mRNA_P-littoralis_Contig1454.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1454.2.1
Unique NamemRNA_P-littoralis_Contig1454.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1454.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1454contigP-littoralis_Contig1454:14447..17078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size276
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789685.0530462-CDS-P-littoralis_Contig1454:14446..145441680789685.0530462-CDS-P-littoralis_Contig1454:14446..14544Pylaiella littoralis U1_48CDSP-littoralis_Contig1454 14447..14544 +
1680789685.065965-CDS-P-littoralis_Contig1454:16901..169861680789685.065965-CDS-P-littoralis_Contig1454:16901..16986Pylaiella littoralis U1_48CDSP-littoralis_Contig1454 16902..16986 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789685.0757754-UTR-P-littoralis_Contig1454:16986..170781680789685.0757754-UTR-P-littoralis_Contig1454:16986..17078Pylaiella littoralis U1_48UTRP-littoralis_Contig1454 16987..17078 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1454.2.1prot_P-littoralis_Contig1454.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1454 14447..16986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1454.2.1

>prot_P-littoralis_Contig1454.2.1 ID=prot_P-littoralis_Contig1454.2.1|Name=mRNA_P-littoralis_Contig1454.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=61bp
QKSVARAPPTAERKRSALPGFCSVLQRTRRETRLSYVLQGVRGIHVPGRA
TANNFSTITS*
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mRNA from alignment at P-littoralis_Contig1454:14447..17078+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1454.2.1 ID=mRNA_P-littoralis_Contig1454.2.1|Name=mRNA_P-littoralis_Contig1454.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2632bp|location=Sequence derived from alignment at P-littoralis_Contig1454:14447..17078+ (Pylaiella littoralis U1_48)
CAGAAGAGCGTTGCAAGAGCACCGCCCACCGCTGAACGTAAACGATCTGC
TCTTCCTGGGTTCTGCTCTGTACTACAGCGGACGCGGCGTGAAACAAGGC
AAGCCCCCACACCTGCCATGTTCACGCACGGCTGATCTTTCAATACACCA
TAACAAGGTGTATTGAAAGATCAGCCGTGCGCGAACGTGGGAGCTTGCTC
ATTGGTATCGTCCTTTTGGCTGATATTCTGTTCTGTTCGTGTGTGGTCTA
TCAGTTTTGTCTGTCTTTGCAGTTCAAGTGTATGCATTTGGTTCCTCCGC
ATGACCCATTACTGAAGAAGCTGAGAATGGAGATCCTTGGTTCTTAGTTT
GGCTCATGCGGCTTGGGTTTCCTTGTGTATGCGCCTGGCATTGCCACGGT
AAGCAGAGTAGATAGCCCCCCTGTCGTCAGTATGTCTGTGTTTGTCTCCT
CCCTTCATCCTTGGCAGTTCAAGTGTATGCATGTGGTTCCTCCGCATGAC
CCATTACTGAAGAAGCTGAGAATGGAGATCCTTGGTTCTTAGTTTGGCTC
ATGCGGCTTGGGTTTCCTTGTGTATGCGCCTGGCATTGCCACGGTAAGCA
GAGTAGATAGCCCCCCTGTCGTCGGTATGTCTGTGTTTGTCTCCTCCCTT
CATCCTTGGCAGTGTATGCATTTGGTTCCTCCGCATGACCCATTACTGAA
GAAGCTGAGAATGGAGATCCTTGGTTCTTAGTTTGGCTCATGCGGCTTGG
GTTTCCTTGTGTATGCGCTTGGCATTGCCACGGTAAGCAGAGTAGATAGC
CCCCTGTCGTCAGTATGTCTGTGTTTGTCTCCTCCCTTCATCCTTGGCAG
TTCAAGTGTATGCATTTGGTTCCTCCGCATGACCCATTACTGAAGAAGCT
GAGAATGGAGATCCTTGGTTCTTAGTTTGGCTCATGCGGCTTGGGTTTCC
TTGTGTATGCGCTTGGCATTGCCACGGTAAGCAGAGTAGATAGCCCCCTG
TCGTCAGTATGTCTGTGTTTGTCTCCTCCCTTCATCCTTGGCAGTTCAAG
TGTATGCATTTGGTTCCTCCGCATGACCCATTACTGAAGAAGCTGAGAAT
GGAGATCCTTGGTTCTTAGTTTGGCTCATGCGGCTTGGGTTTCCTTGTGT
ATGCGCCTGGCATTGCCACGGTAAGCAGAGTAGATAGCCCCCCTGTCGTC
AGTATGTCTGTGTTTGTCTCCTCCCTTCATCCTTGGCAGTTCAAGTGTAT
GCATTTGGTTCCTCCGCATGACCCATTACTGAAGAAGCTGAGAATGGAGA
TCCTTGGTTCTTAGTTTGGCTCATGCGGCTTGGGTTTCCTTGTGTATGCG
CTTGGCATTGCCACGGTAAGCAGAGTAGATAGCCCCCTGTCGTCAGTATG
TCTGTGTTTGTCTCCTCCCTTCATCCTTGGCAGTTCAAGTGTATGCATTT
GGTTCCTCCGCATGACCCATTACTGAAGAAGCTGAGAATGGAGATCCTTG
GTTCTTAGTTTGGCTCATGCGGCTTGGGTTTCCTTGTGTATGCGCTTGGC
ATTGCCACGGTAAGCAGAGTAGATAGCCCCCTGTCGTCAGTATGTCTGTG
TTTGTCTCCTCCCTTCATCCTTGGCAGTTCAAGTGTATGCATTTGGTTCC
TCCGCATGACCCATTACTGAAGAAGCTGAGAATGGAGATCCTTGGTTCTT
AGTTTGGCTCATGCGGCTTGGGTTTCCTTGTGTATGCGCTTGGCATTGCC
ACGGTAAGCAGAGTAGATAGCCCCCTGTCGTCAGTATGTCTGTGTTTGTC
TCCTCCCTTCATCCTTGGCAGTTCAAGTGTATGCATTTGGTTCCTCCGCA
TGACCCATTACTGAAGAAGCTGAGAATGGAGATCCTTGGTTCTTAGTTTG
GCTCATTCGGCTTGGGTTTCCTTGTGTATGCGCTTGGCATTGCCACGGTA
AGCAGAGTAGATAGCCCCCCTGTCGTCGGTATGTCTGTGTTTGTCTCCTC
CCTTCATCCTTGGCAGTTCAAGTGTATGCATTTGGTTCCTCCGCATGACC
CATTACTGAAGAAGCTGAGAATGGAGATCCTCGGTTCTTAGTTTGGCTCA
TGCGGCTTGGGTTTCCTTGTGTATGCGCCTGGCATTGCCACGGTAAGCAG
AGTAGATAGCCCCCCTGTCGTCAGCATGTCTGTGTTTGTCTCCTCCCTTC
ATCCTTGGCAGTTCAAGTGTATGCATTTGGTTCCTCCGCATGACCCATTA
CTGAAGAAGCTGAGAATGGAGATCCTTGGTTCTTAGTTTGGCTCATGCGG
CTTGGGTTTCCTTGTTTGTGCGCCTGGCATTGCCACGGTAAGCAGAGTCG
AGAGCCTCTTCTTTTTTCGTCTTGTTTTAGCCACATCTACCTCTGAGGCT
GTTGTATCGTGTGTGTGTCCTTGCCGTACTCTGTGTCTCGCGTGTGTCGC
CGTAGGCTTTCCTACGTTTTGCAgGGGGTTCGAGGTATACATGTCCCTGG
ACGTGCTACCGCTAACAACTTCTCCACGATAACTTCTTGAGGCGCTGTCG
AGCTTCAAGATCATGGCTTTCCCCGCCAATAAGAAAGCGCTGTCCCCCAA
GATTAATCAAGCAcCCCCTAAACAACAAGGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1454:14447..17078+

>mRNA_P-littoralis_Contig1454.2.1 ID=mRNA_P-littoralis_Contig1454.2.1|Name=mRNA_P-littoralis_Contig1454.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig1454:14447..17078+ (Pylaiella littoralis U1_48)
CAGAAGAGCGTTGCAAGAGCACCGCCCACCGCTGAACGTAAACGATCTGC
TCTTCCTGGGTTCTGCTCTGTACTACAGCGGACGCGGCGTGAAACAAGGC
TTTCCTACGTTTTGCAgGGGGTTCGAGGTATACATGTCCCTGGACGTGCT
ACCGCTAACAACTTCTCCACGATAACTTCTTGA
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